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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE410
Library CH
(Link to library)
Clone ID CHE410
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CHE410P
(Link to Original site)
Representative DNA sequence 
>CHE410 (CHE410Q) /CSM/CH/CHE4-A/CHE410Q.Seq.d/
CCTACTGGNAAAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATA
TATTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAAANTTAAAAAANCNCCTTTTTTG
AAAAAAAAAAXXXXXXXXXXAANNANGGTATTNCNACCAGATCAACAAGGGTTNTNTTTT
TNGNTGGTAAANCAATNAAAAGNATGGTTGGTACTTTNTNTGATTNNCAATATCCAAAAA
NNAATCAATTNTCCATTTGGTCCTCAGATTAAANAGGTGGTATGCAAATTTTTTGTCAAA
AACATTAACTGGTAAGGACCATCACTNTNGAAGTTGAGGGGTTNAGATAATATTGAAAAT
GTTAAANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTC
GNTGGTAAACAATTAGAAGATGGTCGTACTCTCTNTGATTACAACATTCAAAAGGAATCC
ACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACT
GGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAA
ATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAA
TTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTA
GTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATT
ACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAANAACAAAAATTCAAGACAAA
GAAGGTAT
sequence update 2002.10.25
Translated Amino Acid sequence 
ptgkihfyytnikfifyffiycnis*KKKKKKKXKKXPFLKKK---

---XXVXXPDQQGXXFXXVXQXKXWLVLXXIXNIQKXINXPFGPQIKXVVCKFFVKNINW
*gpslxklrgxdnienvkxkiqdkegippdqqrlifxgkqledgrtlxdyniqkestlhl
vlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifagkqledg
rtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvxtkiqdkeg
Translated Amino Acid sequence (All Frames) 
Frame A:
ptgkihfyytnikfifyffiycnis*KKKKKKKXKKXPFLKKK---

---xxgixtrstrvxfxxgkxxkxmvgtxxdxqypkxnqxsiwssd*xggmqifcqkh*l
vrtitxevegxr*y*kc*xkdsrqrryptrptkinfrw*tirrwsysl*lqhskgihspf
spqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystrsttshfrr*tiggw
sysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecxnknsrqrry

Frame B:
llxkfifiiqilnsyfiflyivtfhkkkkkkkxlkxxlf*kkk---

---XXVXXPDQQGXXFXXVXQXKXWLVLXXIXNIQKXINXPFGPQIKXVVCKFFVKNINW
*gpslxklrgxdnienvkxkiqdkegippdqqrlifxgkqledgrtlxdyniqkestlhl
vlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifagkqledg
rtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvxtkiqdkeg

Frame C:
ywxnsfllyky*ihilffyil*hfikkkkkkkx*kxxffekk---

---xxyxxqinkgxxfxw*xnxkxgwyfx*xxiskxxsixhlvlrlxrwyanflsktltg
kdhhxxs*gvxiilkmlxqrfktkkvshqtnkd*fsxvnn*kmvvlsxittfkrnplsi*
ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvfhqinnvsfspvnnwrmv
vlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*xqkfktkkv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE410 (CHE410Q) /CSM/CH/CHE4-A/CHE410Q.Seq.d/                       1249   0.0
AFK425 (AFK425Q) /CSM/AF/AFK4-B/AFK425Q.Seq.d/                       1072   0.0
AFB143 (AFB143Q) /CSM/AF/AFB1-B/AFB143Q.Seq.d/                       1070   0.0
CHA687 (CHA687Q) /CSM/CH/CHA6-D/CHA687Q.Seq.d/                       1068   0.0
SFE817 (SFE817Q) /CSM/SF/SFE8-A/SFE817Q.Seq.d/                       1063   0.0
AFJ301 (AFJ301Q) /CSM/AF/AFJ3-A/AFJ301Q.Seq.d/                       1063   0.0
SFI270 (SFI270Q) /CSM/SF/SFI2-C/SFI270Q.Seq.d/                       1061   0.0
CFF113 (CFF113Q) /CSM/CF/CFF1-A/CFF113Q.Seq.d/                       1061   0.0
AFK885 (AFK885Q) /CSM/AF/AFK8-D/AFK885Q.Seq.d/                       1061   0.0
VFB344 (VFB344Q) /CSM/VF/VFB3-B/VFB344Q.Seq.d/                       1059   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   967   0.0    5
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   959   0.0    5
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   959   0.0    5
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   617   e-173  3
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   593   e-169  4
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   577   e-165  3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   458   e-126  3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   458   e-126  3
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   111   9e-79  5
CF181994|CF181994.1 ISO4G8F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   111   9e-79  5
dna update 2004. 9.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   322   9e-87
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   322   9e-87
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   322   9e-87
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...   320   4e-86
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   320   4e-86
AF517848_1(AF517848|pid:none) Griffithsia japonica isolate Gj526...   309   8e-83
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   306   4e-82
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   306   4e-82
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   306   5e-82
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   306   5e-82
protein update 2009. 3.30
PSORT 

 psg: 0.55  gvh: 0.45  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.52  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHE410 is nuc
5' end seq. ID CHE410F
5' end seq. 
>CHE410F.Seq
CCTACTGGNAAAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATA
TATTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAAANTTAAAAAANCNCCTTTTTTG
AAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 140
3' end seq. ID CHE410Z
3' end seq. 
>CHE410Z.Seq
NNNNNNNNNNAANNANGGTATTNCNACCAGATCAACAAGGGTTNTNTTTTTNGNTGGTAA
ANCAATNAAAAGNATGGTTGGTACTTTNTNTGATTNNCAATATCCAAAAANNAATCAATT
NTCCATTTGGTCCTCAGATTAAANAGGTGGTATGCAAATTTTTTGTCAAAAACATTAACT
GGTAAGGACCATCACTNTNGAAGTTGAGGGGTTNAGATAATATTGAAAATGTTAAANCAA
AGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGNTGGTAAAC
AATTAGAAGATGGTCGTACTCTCTNTGATTACAACATTCAAAAGGAATCCACTCTCCATT
TAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTA
TTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACA
AAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATG
GTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGAT
TAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAG
TTGAAGGTAGTGACAACATTGAGAATGTAANAACAAAAATTCAAGACAAAGAAGGTAT
Length of 3' end seq. 718
Connected seq. ID CHE410P
Connected seq. 
>CHE410P.Seq
CCTACTGGNAAAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATA
TATTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAAAANTTAAAAAANCNCCTTTTTTG
AAAAAAAAAA----------AANNANGGTATTNCNACCAGATCAACAAGGGTTNTNTTTT
TNGNTGGTAAANCAATNAAAAGNATGGTTGGTACTTTNTNTGATTNNCAATATCCAAAAA
NNAATCAATTNTCCATTTGGTCCTCAGATTAAANAGGTGGTATGCAAATTTTTTGTCAAA
AACATTAACTGGTAAGGACCATCACTNTNGAAGTTGAGGGGTTNAGATAATATTGAAAAT
GTTAAANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTC
GNTGGTAAACAATTAGAAGATGGTCGTACTCTCTNTGATTACAACATTCAAAAGGAATCC
ACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACT
GGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAA
ATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAA
TTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTA
GTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATT
ACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAANAACAAAAATTCAAGACAAA
GAAGGTAT
Length of connected seq. 838
Full length Seq ID -
Full length Seq. -
Length of full length seq. -