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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFF590
Library AF
(Link to library)
Clone ID AFF590
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13926-1
Original site URL
Representative seq. ID AFF590Z
(Link to Original site)
Representative DNA sequence 
>AFF590 (AFF590Q) /CSM/AF/AFF5-D/AFF590Q.Seq.d/
XXXXXXXXXXGCAGTTCTCAAGACCCATTAGCATGCCCAATTGCTGCTGGTGATTACCAA
AAGAATATGACCGTAAATGATTNCCATCTGATGCTCCATCAGGTAAATACACTGGTAACG
TTGTTATCACCGATCAAANCAATGCTGAAATCGCCTG
sequence update 2001. 6. 2
Translated Amino Acid sequence 
---SSQDPLACPIAAGDYQKNMTVNDXHLMLHQVNTLVTLLSPIKXMLKSP
Translated Amino Acid sequence (All Frames) 
Frame A:
---qfsrpismpnccw*lpkeydrk*xpsdapsgkytgnvvitdqxnaeia


Frame B:
---SSQDPLACPIAAGDYQKNMTVNDXHLMLHQVNTLVTLLSPIKXMLKSP


Frame C:
---vlkth*haqlllvitkri*p*mixi*csir*ihw*rcyhrsxqc*nrl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFF590 (AFF590Q) /CSM/AF/AFF5-D/AFF590Q.Seq.d/                        280   6e-75
VSK373 (VSK373Q) /CSM/VS/VSK3-D/VSK373Q.Seq.d/                        254   3e-67
VSJ851 (VSJ851Q) /CSM/VS/VSJ8-C/VSJ851Q.Seq.d/                        254   3e-67
VSJ841 (VSJ841Q) /CSM/VS/VSJ8-B/VSJ841Q.Seq.d/                        254   3e-67
VSJ516 (VSJ516Q) /CSM/VS/VSJ5-A/VSJ516Q.Seq.d/                        254   3e-67
VSJ452 (VSJ452Q) /CSM/VS/VSJ4-C/VSJ452Q.Seq.d/                        254   3e-67
VSI417 (VSI417Q) /CSM/VS/VSI4-A/VSI417Q.Seq.d/                        254   3e-67
VSI354 (VSI354Q) /CSM/VS/VSI3-C/VSI354Q.Seq.d/                        254   3e-67
VSG174 (VSG174Q) /CSM/VS/VSG1-D/VSG174Q.Seq.d/                        254   3e-67
VSG156 (VSG156Q) /CSM/VS/VSG1-C/VSG156Q.Seq.d/                        254   3e-67
own update 2001. 9. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ074732|BQ074732.1 fz25c01.x1 Gong zebrafish testis Danio rerio cDNA 3' similar tocontains element XTR repetitive element ;, mRNA sequence.    40   8.6    1
BZ391788|BZ391788.1 EINAT07TF EI_10_12_KB Entamoeba invadens genomic clone EINAT07, DNA sequence.    40   8.6    1
AC046193|AC046193.2 Homo sapiens chromosome 2 clone RP11-169G13 map 2, WORKING DRAFT SEQUENCE, 20 unordered pieces.    32   8.9    3
dna update 2004. 4.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54SZ8) RecName: Full=Putative phosphatidylglycerol/phosphatidy...    36   0.35
protein update 2009. 4.20
PSORT 

 psg: 0.75  gvh: 0.49  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for AFF590 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFF590Z
3' end seq. 
>AFF590Z.Seq
----------GCAGTTCTCAAGACCCATTAGCATGCCCAATTGCTGCTGGTGATTACCAA
AAGAATATGACCGTAAATGATTNCCATCTGATGCTCCATCAGGTAAATACACTGGTAACG
TTGTTATCACCGATCAAANCAATGCTGAAATCGCCTG
Length of 3' end seq. 147
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -