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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE332
Library CH
(Link to library)
Clone ID CHE332
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16517-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHE332 (CHE332Q) /CSM/CH/CHE3-B/CHE332Q.Seq.d/
XXXXXXXXXXTNATTAGGAANNAANAANATTTTTTCATTTGCAAGAAGTGTTGTTAAACG
TGGTTNNCAAGGTGTTTCAAATATTTATACTCAACATAAACCATTATTACATGAATTTTA
GATAGTATTTTAAAGAACAAATTAAAAGAAACCTCTTATCCATACTTATCAACAACTCAA
TCAAGAGAGAGACCACAAGATGTAATTATATTTATGGTTGGTGGTATCACTTATGAAGAG
GCATTAACCGTTTACACTTTTAATTCTTTAAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---irxxxxffickkcc*twxxrcfkylyst*tiit*ILDSILKNKLKETSYPYLSTTQS
RERPQDVIIFMVGGITYEEALTVYTFNSL
Translated Amino Acid sequence (All Frames) 
Frame A:
---x*exxxffhlqevllnvvxkvfqifilninhyymnfr*yfkeqikrnllsilinnsi
krettrcnyiygwwyhl*rginrlhf*ffk


Frame B:
---irxxxxffickkcc*twxxrcfkylyst*tiit*ILDSILKNKLKETSYPYLSTTQS
RERPQDVIIFMVGGITYEEALTVYTFNSL


Frame C:
---lgxxxifsfarsvvkrgxqgvsniytqhkpllhef*ivf*rtn*kkplihtyqqlnq
erdhkm*lylwlvvslmkrh*pftllil*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE332 (CHE332Q) /CSM/CH/CHE3-B/CHE332Q.Seq.d/                        480   e-135
VSH887 (VSH887Q) /CSM/VS/VSH8-D/VSH887Q.Seq.d/                        466   e-131
VFK543 (VFK543Q) /CSM/VF/VFK5-B/VFK543Q.Seq.d/                        466   e-131
SSJ808 (SSJ808Q) /CSM/SS/SSJ8-A/SSJ808Q.Seq.d/                        466   e-131
SSC757 (SSC757Q) /CSM/SS/SSC7-C/SSC757Q.Seq.d/                        466   e-131
SFI855 (SFI855Q) /CSM/SF/SFI8-C/SFI855Q.Seq.d/                        466   e-131
SFI755 (SFI755Q) /CSM/SF/SFI7-C/SFI755Q.Seq.d/                        466   e-131
SFH722 (SFH722Q) /CSM/SF/SFH7-A/SFH722Q.Seq.d/                        466   e-131
SFF477 (SFF477Q) /CSM/SF/SFF4-D/SFF477Q.Seq.d/                        466   e-131
SFC628 (SFC628Q) /CSM/SF/SFC6-B/SFC628Q.Seq.d/                        466   e-131
own update 2002. 9.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    36   4e-04  9
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    36   0.001  12
AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    32   0.005  7
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence.    32   0.014  7
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             34   0.028  14
AC103297|AC103297.5 Rattus norvegicus clone CH230-21N14, WORKING DRAFT SEQUENCE, 2 unordered pieces.    40   0.034  4
AC140759|AC140759.2 Rattus norvegicus clone CH230-48I18, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40   0.035  4
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence.    32   0.041  7
AC098516|AC098516.4 Rattus norvegicus clone CH230-67L4, *** SEQUENCING IN PROGRESS ***, 35 unordered pieces.    36   0.078  4
AC114820|AC114820.4 Mus musculus BAC clone RP23-70M6 from 18, complete sequence.    34   0.13   4
dna update 2004. 2.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GE3) RecName: Full=Vacuolar protein sorting-associated prote...   103   2e-33
BC123422_1(BC123422|pid:none) Bos taurus vacuolar protein sortin...    70   1e-15
AK223214_1(AK223214|pid:none) Homo sapiens mRNA for vacuolar pro...    69   3e-15
AJ133421_1(AJ133421|pid:none) Homo sapiens mRNA for leucocyte va...    69   3e-15
(Q9NRW7) RecName: Full=Vacuolar protein sorting-associated prote...    69   3e-15
AK146190_1(AK146190|pid:none) Mus musculus CRL-1722 L5178Y-R cDN...    69   3e-15
AK295529_1(AK295529|pid:none) Homo sapiens cDNA FLJ54353 complet...    69   3e-15
AJ720470_1(AJ720470|pid:none) Gallus gallus mRNA for hypothetica...    70   4e-15
AK298786_1(AK298786|pid:none) Homo sapiens cDNA FLJ50613 complet...    66   2e-14
BT045798_1(BT045798|pid:none) Salmo salar clone ssal-rgf-531-252...    66   1e-13
protein update 2009. 5.18
PSORT 

 psg: 0.71  gvh: 0.32  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHE332 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHE332Z
3' end seq. 
>CHE332Z.Seq
NNNNNNNNNNTNATTAGGAANNAANAANATTTTTTCATTTGCAAGAAGTGTTGTTAAACG
TGGTTNNCAAGGTGTTTCAAATATTTATACTCAACATAAACCATTATTACATGAATTTTA
GATAGTATTTTAAAGAACAAATTAAAAGAAACCTCTTATCCATACTTATCAACAACTCAA
TCAAGAGAGAGACCACAAGATGTAATTATATTTATGGTTGGTGGTATCACTTATGAAGAG
GCATTAACCGTTTACACTTTTAATTCTTTAAA
Length of 3' end seq. 272
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -