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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE323
Library CH
(Link to library)
Clone ID CHE323
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHE323P
(Link to Original site)
Representative DNA sequence 
>CHE323 (CHE323Q) /CSM/CH/CHE3-A/CHE323Q.Seq.d/
GTTGGCCTACTGGAAATAATAAATTTACTATCAAGTAACTATTTTTTCTTTTCTTTCTTT
TTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAA
AAAAXXXXXXXXXXGGCCAAATTACAAATGGTAGAGCTCAAGGTCAAGTTATCACTGGTG
GTGATAATACTGGTACAGTTGGAAGAGGTGCAGTTACAACCGCATCTTCTGTAGCTAATA
CAGTTGGTGAATTCCTTGGTGGATCTAGAACTGGTGGTTCCTCATCTGCTGGTACAGTCG
GTAACGTAATCTCTGATTCTTATACATCAATTGGTAAAATTGCATCTGGTAATGGTAATT
CCCTTAGTGAGACCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCTGGTACAG
ATTCAGTCGGTGTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTG
GTAAATTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAG
ATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCAC
CTGCAATCTATCAATCAATGAAATCTGAAAATCTAAAAAATTTAGATGATGAAGTAATTC
GTAATACTCTTAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
vglleiinllssnyfffsfflkfk**k**KLILKKRNVKKK---

---GQITNGRAQGQVITGGDNTGTVGRGAVTTASSVANTVGEFLGGSRTGGSSSAGTVGN
VISDSYTSIGKIASGNGNSLSETIGTTGDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGK
FNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSENLKNLDDEVIRN
TLK
Translated Amino Acid sequence (All Frames) 
Frame A:
vglleiinllssnyfffsfflkfk**k**KLILKKRNVKKK---

---GQITNGRAQGQVITGGDNTGTVGRGAVTTASSVANTVGEFLGGSRTGGSSSAGTVGN
VISDSYTSIGKIASGNGNSLSETIGTTGDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGK
FNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSENLKNLDDEVIRN
TLK

Frame B:
laywk**iyyqvtifsflsf*slnnrnnkn*y*kkgtlkkk---

---aklqmvelkvklslvviilvqleevqlqphll*liqlvnslvdlelvvphllvqsvt
*slilihqlvklhlvmviplvrplvplvihwlihslvqiqsv*lvsi*lqrlli*llvvn
ltlinntlinptvqfhhkimkklkrdykvlinnyknnhlqsinq*nlki*ki*mmk*fvi
ll

Frame C:
wptgnnkftik*lfflfflfkv*iieiikinikkker*kk---

---pnykw*ssrssyhww**ywyswkrcsynrifcs*ysw*ipwwi*nwwflicwysr*r
nl*flyinw*nciw*w*fp**dhwyhw*yigsyirwyrfsrcnwfpynykdf*fdcww*i
*l*stih**ilrfnsitr**rn*keitkcsstitrtitcnlsinei*kskkfr**sns*y
s*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE323 (CHE323Q) /CSM/CH/CHE3-A/CHE323Q.Seq.d/                       1070   0.0
SFJ694 (SFJ694Q) /CSM/SF/SFJ6-D/SFJ694Q.Seq.d/                       1063   0.0
SFH241 (SFH241Q) /CSM/SF/SFH2-B/SFH241Q.Seq.d/                       1063   0.0
SFD658 (SFD658Q) /CSM/SF/SFD6-C/SFD658Q.Seq.d/                       1063   0.0
SFC316 (SFC316Q) /CSM/SF/SFC3-A/SFC316Q.Seq.d/                       1063   0.0
AFO702 (AFO702Q) /CSM/AF/AFO7-A/AFO702Q.Seq.d/                       1063   0.0
AFK651 (AFK651Q) /CSM/AF/AFK6-C/AFK651Q.Seq.d/                       1063   0.0
AFC432 (AFC432Q) /CSM/AF/AFC4-B/AFC432Q.Seq.d/                       1063   0.0
AFA655 (AFA655Q) /CSM/AF/AFA6-C/AFA655Q.Seq.d/                       1063   0.0
CFG816 (CFG816Q) /CSM/CF/CFG8-A/CFG816Q.Seq.d/                       1055   0.0
own update 2002. 9.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.  1055   0.0    1
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    32   0.038  12
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    32   0.11   10
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    32   0.12   11
CL775294|CL775294.1 OR_BBa0088P06.r OR_BBa Oryza rufipogon genomic clone OR_BBa0088P06 3', genomic survey sequence.    48   0.19   1
CL612806|CL612806.1 OR_BBa0004D04.f OR_BBa Oryza rufipogon genomic clone OR_BBa0004D04 5', genomic survey sequence.    48   0.19   1
CL612558|CL612558.1 OR_BBa0003N19.r OR_BBa Oryza rufipogon genomic clone OR_BBa0003N19 3', genomic survey sequence.    48   0.19   1
AL627350|AL627350.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0302E05.    48   0.19   1
AL606998|AL606998.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09.    48   0.19   1
BM881131|BM881131.1 rb06d01.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5' similar to TR:Q17494 Q17494 B0393.5 PROTEIN. [1] ;, mRNA sequence.    48   0.19   1
dna update 2004. 9.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   290   3e-77
AM480868_2(AM480868|pid:none) Vitis vinifera contig VV78X049805....    36   1.1
CP000679_1803(CP000679|pid:none) Caldicellulosiruptor saccharoly...    34   3.3
AL935049_1(AL935049|pid:none) Zebrafish DNA sequence from clone ...    33   7.4
AM902716_4723(AM902716|pid:none) Bordetella petrii strain DSM 12...    33   7.4
CP000249_1711(CP000249|pid:none) Frankia sp. CcI3, complete geno...    33   7.4
CP000826_1788(CP000826|pid:none) Serratia proteamaculans 568, co...    33   9.7
protein update 2008.10.28
PSORT 

 psg: 0.51  gvh: 0.47  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for CHE323 is nuc
5' end seq. ID CHE323F
5' end seq. 
>CHE323F.Seq
GTTGGCCTACTGGAAATAATAAATTTACTATCAAGTAACTATTTTTTCTTTTCTTTCTTT
TTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAA
AAAANNNNNNNNNN
Length of 5' end seq. 134
3' end seq. ID CHE323Z
3' end seq. 
>CHE323Z.Seq
NNNNNNNNNNGGCCAAATTACAAATGGTAGAGCTCAAGGTCAAGTTATCACTGGTGGTGA
TAATACTGGTACAGTTGGAAGAGGTGCAGTTACAACCGCATCTTCTGTAGCTAATACAGT
TGGTGAATTCCTTGGTGGATCTAGAACTGGTGGTTCCTCATCTGCTGGTACAGTCGGTAA
CGTAATCTCTGATTCTTATACATCAATTGGTAAAATTGCATCTGGTAATGGTAATTCCCT
TAGTGAGACCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCTGGTACAGATTC
AGTCGGTGTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAA
ATTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAA
TGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGC
AATCTATCAATCAATGAAATCTGAAAATCTAAAAAATTTAGATGATGAAGTAATTCGTAA
TACTCTTAAG
Length of 3' end seq. 550
Connected seq. ID CHE323P
Connected seq. 
>CHE323P.Seq
GTTGGCCTACTGGAAATAATAAATTTACTATCAAGTAACTATTTTTTCTTTTCTTTCTTT
TTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAA
AAAA----------GGCCAAATTACAAATGGTAGAGCTCAAGGTCAAGTTATCACTGGTG
GTGATAATACTGGTACAGTTGGAAGAGGTGCAGTTACAACCGCATCTTCTGTAGCTAATA
CAGTTGGTGAATTCCTTGGTGGATCTAGAACTGGTGGTTCCTCATCTGCTGGTACAGTCG
GTAACGTAATCTCTGATTCTTATACATCAATTGGTAAAATTGCATCTGGTAATGGTAATT
CCCTTAGTGAGACCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCTGGTACAG
ATTCAGTCGGTGTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTG
GTAAATTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAG
ATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCAC
CTGCAATCTATCAATCAATGAAATCTGAAAATCTAAAAAATTTAGATGATGAAGTAATTC
GTAATACTCTTAAG
Length of connected seq. 664
Full length Seq ID -
Full length Seq. -
Length of full length seq. -