CHE315
Library CH
(Link to library)
Clone ID CHE315
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID CHE315P
(Link to Original site)
Representative DNA sequence
>CHE315 (CHE315Q) /CSM/CH/CHE3-A/CHE315Q.Seq.d/
CTGTTGGCCTACTGGAAATTTATTTCACAAAAAGTATAATACAAGATGGGTAAAGAAAAA
ACACATATTAATATCGTCGTTATTGGTCACGTAGATGCTGGTAAATCAACCACCACTGGT
CATTTAATCTACAAATGTGGTGGTATCGATAAAAGAGTTATCGAAAAATACGAAAAGGAA
GCTTCTGAAATGGGTAAACAATCATTCAAATATGCTTGGGTTATGGATAAATTAAAAGCT
GAACGTGAAAGAGGTATTACCATCGATATTGCTTTATGGAAATTCGAAACCTCAAAATAC
TACTTCACCATTATTGATGCTCCAGGTCACAGAGATTTCATCAAGAATATGATTACTGGT
ACCTCACAAGCCGATTGTGCTGTCTTAGTCATTGCCTCCCCAACTGGTGAGTTCGAAGCT
GGTATTGCCAAGAACGGTCAAACTCGTGAACACGCTCTCCTTGCTTACACTTTAGGTGTC
AAACAAATGATCGTTGCTATCAACAAGATGGATGAAAAATCAACCAACTACTCACAAGCC
CGTTACGACGAAATTGTCAAAGAAGTTTCATCTTTCATTAAAAAGATTGGTTACAACXXX
XXXXXXXGNGCCGTCGTTGCCAAAAAAGGNACTGCCNCCGTCGTCTTAAANAGTGGTGAT
GCTGCTATGGTCGAATTAACCCCATCTCGNCCAATGTGTGTTGAATCATTCNCTGAANAC
CCNCCNTTAGGTNGTTTNNCCGTCANANANATTAGACAAACCGTTGCCGNCGGNGTCATC
AAATCAACCGTCAANAAAGCCCCAGGTAAAGCAGGTGATAANAAAGGNGCTGCTGC
sequence update 2002.10.25
Translated Amino Acid sequence
llaywkfisqkv*YKMGKEKTHINIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKE
ASEMGKQSFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITG
TSQADCAVLVIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQA
RYDEIVKEVSSFIKKIGYN---

---AVVAKKGTAXVVLXSGDAAMVELTPSRPMCVESFXEXPPLGXXXVXXIRQTVAXGVI
KSTVXKAPGKAGDXKGAA


Translated Amino Acid sequence (All Frames)
Frame A:
llaywkfisqkv*YKMGKEKTHINIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKE
ASEMGKQSFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITG
TSQADCAVLVIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQA
RYDEIVKEVSSFIKKIGYN---

---xpslpkkxlppss*xvvmllwsn*phlxqcvlnhslxtxx*vvxpsxxldkplpxxs
snqpsxkpqvkqvixkxll

Frame B:
cwptgnlfhkkyntrwvkkkhilissllvt*mlvnqpplvi*stnvvvsikelskntkrk
llkwvnnhsnmlglwin*klnvkevlpsillygnskpqnttspllmlqvteissri*llv
phkpivls*slppqlvssklvlprtvklvntlslltl*vsnk*sllstrwmknqptthkp
vttklskkfhlslkrlvt---

---xrrcqkrxcxrrlkxw*ccygrinpisxnvc*iix*xpxxrxfxrxxx*tnrcrrxh
qinrqxspr*sr**xrxcc

Frame C:
vglleiyftksiiqdg*rknty*yrrywsrrcw*inhhwsfnlqmwwyr*ksyrkirkgs
f*ng*tiiqiclgyg*iks*t*kryyhrycfmeirnlkillhhy*csrsqrfhqeydywy
ltsrlcclshclpnw*vrswycqersns*trspclhfrcqtndrcyqqdg*kinqlltsp
lrrncqrsfifh*kdwlq---

---AVVAKKGTAXVVLXSGDAAMVELTPSRPMCVESFXEXPPLGXXXVXXIRQTVAXGVI
KSTVXKAPGKAGDXKGAA

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHE315 (CHE315Q) /CSM/CH/CHE3-A/CHE315Q.Seq.d/ 1479 0.0
VFL419 (VFL419Q) /CSM/VF/VFL4-A/VFL419Q.Seq.d/ 1160 0.0
VFM610 (VFM610Q) /CSM/VF/VFM6-A/VFM610Q.Seq.d/ 1154 0.0
VFM513 (VFM513Q) /CSM/VF/VFM5-A/VFM513Q.Seq.d/ 1154 0.0
VFM279 (VFM279Q) /CSM/VF/VFM2-D/VFM279Q.Seq.d/ 1154 0.0
VFD847 (VFD847Q) /CSM/VF/VFD8-B/VFD847Q.Seq.d/ 1154 0.0
VFD763 (VFD763Q) /CSM/VF/VFD7-C/VFD763Q.Seq.d/ 1154 0.0
VFD189 (VFD189Q) /CSM/VF/VFD1-D/VFD189Q.Seq.d/ 1154 0.0
SFK310 (SFK310Q) /CSM/SF/SFK3-A/SFK310Q.Seq.d/ 1154 0.0
CFD766 (CFD766Q) /CSM/CF/CFD7-C/CFD766Q.Seq.d/ 1154 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X55972|X55972.1 D. discoideum EF1-II gene for elongation factor 1 alpha. 1076 0.0 1
X55973|X55973.1 D. discoideum EF1-I gene for elongation factor 1 alpha. 886 0.0 2
AF016242|AF016242.1 Dictyostelium discoideum protein synthesis elongation factor 1-alpha (tef2) gene, partial cds. 803 0.0 3
CO483664|CO483664.1 GQ0206.B3_A14 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ0206_A14 5', mRNA sequence. 319 1e-93 3
CF433932|CF433932.1 NIT1_31_E10.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_31_E10_A002 3', mRNA sequence. 147 6e-91 3
M29934|M29934.1 C.albicans elongation factor 1-alpha (TEF-1) gene, complete cds. 260 5e-90 5
CF433174|CF433174.1 NIT1_25_D08.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_25_D08_A002 5', mRNA sequence. 147 1e-88 3
CF433248|CF433248.1 NIT1_25_H11.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_25_H11_A002 5', mRNA sequence. 147 1e-88 3
CF433089|CF433089.1 NIT1_20_G08.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_20_G08_A002 5', mRNA sequence. 147 1e-88 3
CF432603|CF432603.1 NIT1_17_A01.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_17_A01_A002 5', mRNA sequence. 147 2e-87 3
dna update 2004. 9.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P18624) RecName: Full=Elongation factor 1-alpha; Short... 370 e-101
X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio... 364 2e-99
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati... 364 2e-99
BC092884_1(BC092884|pid:none) Danio rerio zgc:110335, mRNA (cDNA... 329 6e-89
(P13549) RecName: Full=Elongation factor 1-alpha, somatic form; ... 329 7e-89
(Q90835) RecName: Full=Elongation factor 1-alpha 1; Sho... 328 1e-88
AK167843_1(AK167843|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK... 328 1e-88
AB174733_1(AB174733|pid:none) Macaca fascicularis brain cDNA clo... 328 1e-88
(P10126) RecName: Full=Elongation factor 1-alpha 1; Sho... 328 1e-88
M22432_1(M22432|pid:none) Mus musculus protein synthesis elongat... 328 1e-88
protein update 2009. 3.30
PSORT

psg: 0.84 gvh: 0.34 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: cytoskeletal

>> prediction for CHE315 is cyt

5' end seq. ID CHE315F
5' end seq.
>CHE315F.Seq
CTGTTGGCCTACTGGAAATTTATTTCACAAAAAGTATAATACAAGATGGGTAAAGAAAAA
ACACATATTAATATCGTCGTTATTGGTCACGTAGATGCTGGTAAATCAACCACCACTGGT
CATTTAATCTACAAATGTGGTGGTATCGATAAAAGAGTTATCGAAAAATACGAAAAGGAA
GCTTCTGAAATGGGTAAACAATCATTCAAATATGCTTGGGTTATGGATAAATTAAAAGCT
GAACGTGAAAGAGGTATTACCATCGATATTGCTTTATGGAAATTCGAAACCTCAAAATAC
TACTTCACCATTATTGATGCTCCAGGTCACAGAGATTTCATCAAGAATATGATTACTGGT
ACCTCACAAGCCGATTGTGCTGTCTTAGTCATTGCCTCCCCAACTGGTGAGTTCGAAGCT
GGTATTGCCAAGAACGGTCAAACTCGTGAACACGCTCTCCTTGCTTACACTTTAGGTGTC
AAACAAATGATCGTTGCTATCAACAAGATGGATGAAAAATCAACCAACTACTCACAAGCC
CGTTACGACGAAATTGTCAAAGAAGTTTCATCTTTCATTAAAAAGATTGGTTACAACNNN
NNNNNNN
Length of 5' end seq. 607
3' end seq. ID CHE315Z
3' end seq.
>CHE315Z.Seq
NNNNNNNNNNGNGCCGTCGTTGCCAAAAAAGGNACTGCCNCCGTCGTCTTAAANAGTGGT
GATGCTGCTATGGTCGAATTAACCCCATCTCGNCCAATGTGTGTTGAATCATTCNCTGAA
NACCCNCCNTTAGGTNGTTTNNCCGTCANANANATTAGACAAACCGTTGCCGNCGGNGTC
ATCAAATCAACCGTCAANAAAGCCCCAGGTAAAGCAGGTGATAANAAAGGNGCTGCTGC
Length of 3' end seq. 239
Connected seq. ID CHE315P
Connected seq.
>CHE315P.Seq
CTGTTGGCCTACTGGAAATTTATTTCACAAAAAGTATAATACAAGATGGGTAAAGAAAAA
ACACATATTAATATCGTCGTTATTGGTCACGTAGATGCTGGTAAATCAACCACCACTGGT
CATTTAATCTACAAATGTGGTGGTATCGATAAAAGAGTTATCGAAAAATACGAAAAGGAA
GCTTCTGAAATGGGTAAACAATCATTCAAATATGCTTGGGTTATGGATAAATTAAAAGCT
GAACGTGAAAGAGGTATTACCATCGATATTGCTTTATGGAAATTCGAAACCTCAAAATAC
TACTTCACCATTATTGATGCTCCAGGTCACAGAGATTTCATCAAGAATATGATTACTGGT
ACCTCACAAGCCGATTGTGCTGTCTTAGTCATTGCCTCCCCAACTGGTGAGTTCGAAGCT
GGTATTGCCAAGAACGGTCAAACTCGTGAACACGCTCTCCTTGCTTACACTTTAGGTGTC
AAACAAATGATCGTTGCTATCAACAAGATGGATGAAAAATCAACCAACTACTCACAAGCC
CGTTACGACGAAATTGTCAAAGAAGTTTCATCTTTCATTAAAAAGATTGGTTACAAC---
-------GNGCCGTCGTTGCCAAAAAAGGNACTGCCNCCGTCGTCTTAAANAGTGGTGAT
GCTGCTATGGTCGAATTAACCCCATCTCGNCCAATGTGTGTTGAATCATTCNCTGAANAC
CCNCCNTTAGGTNGTTTNNCCGTCANANANATTAGACAAACCGTTGCCGNCGGNGTCATC
AAATCAACCGTCAANAAAGCCCCAGGTAAAGCAGGTGATAANAAAGGNGCTGCTGC
Length of connected seq. 826
Full length Seq ID -
Full length Seq. -
Length of full length seq. -