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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE274
Library CH
(Link to library)
Clone ID CHE274
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13897-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHE274 (CHE274Q) /CSM/CH/CHE2-D/CHE274Q.Seq.d/
XXXXXXXXXXCTTTACATTACATTGAAAGATTCAAAATCATGTTGGTTCGTATTCAATCT
AAATTCCAATTACGTCGTGTTTGTAAAGCAATCGGTGCAACTCCATTAGTTAAATTGGGT
GCCCCTATCCCTGAGGAATTGGGTTACTGTGATGAAGTACTCGTTGAAGAGATCGGTTCA
ACCAAATGTTGTATTTTCCGTCAAAATAAAGAAGAAAGTGAAATCTCCACCATTGTAGTT
CGTGGTTCAACCAATAACATTCTCGATGATATTGAACGTGCCATCGATGATGGTGTCAAC
GTTTTCAAAGGTATGTGTAAAGATGGTAGATTCTTAGCTGGTGCTGGTGCTTTTGAAATT
GAAGCCTCACGTAAACTCCAAGCTTTTGCCGATGCTACACCAGGTCTCTCTCAATATTCA
ATTCGTCAATACGCTGAAGCTTTCGAAATCATTCCAAGAACTCTTGCTGAAACTAGTGGT
CACGACTCCTCAAAAGCAATCTCAAATATTTATGCAGCTCATACCAAAGGTAATACCAAT
TATGGTTTAGATATTGAATCTGGTCAACCAAAATCTGTACTCGAAATGGATGTTTTAGAC
GCTTTTGCTTCAAAACTTTTCGCAATTAAATTAGCTACAAACACTGCTAACACCGTTTTA
AGAGTCGATCAAATCATTATGTCTAAACCAGCTGGGGTCCAAAACCACCAAAAAGGGTCC
AACCGATGCNANATTAAATAAATAAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---LHYIERFKIMLVRIQSKFQLRRVCKAIGATPLVKLGAPIPEELGYCDEVLVEEIGST
KCCIFRQNKEESEISTIVVRGSTNNILDDIERAIDDGVNVFKGMCKDGRFLAGAGAFEIE
ASRKLQAFADATPGLSQYSIRQYAEAFEIIPRTLAETSGHDSSKAISNIYAAHTKGNTNY
GLDIESGQPKSVLEMDVLDAFASKLFAIKLATNTANTVLRVDQIIMSKPAGVQNHQKGSN
RCXIK*i
Translated Amino Acid sequence (All Frames) 
Frame A:
---ftlh*kiqnhvgsysi*ipitscl*snrcnsis*igcpyp*gigll**str*rdrfn
qmlyfpsk*rrk*nlhhcsswfnq*hsr*y*tchr*wcqrfqryv*rw*ilswcwcf*n*
slt*tpsfcrcytrslsifnssir*sfrnhsknsc*n*wsrllksnlkylcssyqr*yql
wfry*iwstkictrngcfrrfcfktfrn*isykhc*hrfksrsnhyv*tswgpkppkrvq
pmxx*ink


Frame B:
---LHYIERFKIMLVRIQSKFQLRRVCKAIGATPLVKLGAPIPEELGYCDEVLVEEIGST
KCCIFRQNKEESEISTIVVRGSTNNILDDIERAIDDGVNVFKGMCKDGRFLAGAGAFEIE
ASRKLQAFADATPGLSQYSIRQYAEAFEIIPRTLAETSGHDSSKAISNIYAAHTKGNTNY
GLDIESGQPKSVLEMDVLDAFASKLFAIKLATNTANTVLRVDQIIMSKPAGVQNHQKGSN
RCXIK*i


Frame C:
---yitlkdskscwfvfnlnsnyvvfvkqsvqlh*lnwvplslrnwvtvmkyslkrsvqp
nvvfsvkikkkvksppl*fvvqpitfsmilnvpsmmvstfskvcvkmvds*lvlvllklk
phvnskllpmlhqvslniqfvntlklsksfqelllklvvttpqkqsqifmqlipkvipim
v*ilnlvnqnlyskwmf*tlllqnfsqln*lqtlltpf*esikslclnqlgskttkkgpt
daxlnk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE274 (CHE274Q) /CSM/CH/CHE2-D/CHE274Q.Seq.d/                       1447   0.0
AFE837 (AFE837Q) /CSM/AF/AFE8-B/AFE837Q.Seq.d/                       1445   0.0
VFC658 (VFC658Q) /CSM/VF/VFC6-C/VFC658Q.Seq.d/                       1433   0.0
SFB643 (SFB643Q) /CSM/SF/SFB6-B/SFB643Q.Seq.d/                       1433   0.0
CFF166 (CFF166Q) /CSM/CF/CFF1-C/CFF166Q.Seq.d/                       1433   0.0
VFB696 (VFB696Q) /CSM/VF/VFB6-D/VFB696Q.Seq.d/                       1431   0.0
SFD263 (SFD263Q) /CSM/SF/SFD2-C/SFD263Q.Seq.d/                       1423   0.0
AFC664 (AFC664Q) /CSM/AF/AFC6-C/AFC664Q.Seq.d/                       1423   0.0
SFB668 (SFB668Q) /CSM/SF/SFB6-C/SFB668Q.Seq.d/                       1419   0.0
AFO380 (AFO380Q) /CSM/AF/AFO3-D/AFO380Q.Seq.d/                       1419   0.0
own update 2002. 9.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.  1358   0.0    4
AW332428|AW332428.1 S8D2 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    42   4e-05  3
AW335478|AW335478.1 S47F10 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    42   6e-05  3
AF136446|AF136446.1 Tetrahymena pyriformis chaperonin-containing-TCP1 theta subunit (CCTtheta) gene, complete cds.    58   2e-04  1
CC819983|CC819983.1 1O0006D22R Oxytricha plasmid UUGC1O library Sterkiella histriomuscorum genomic clone UUGC1O0006D22 R, genomic survey sequence.    42   7e-04  3
BB409385|BB409385.1 Mus musculus 7 days embryo cDNA, RIKEN full-length enriched library, clone:C430013O04, 3' end partial sequence, similar to ddbj:Z37164 M.musculus Cctq mRNA encoding cytosolic chaperone containing TCP-1, theta subunit (CCTtheta).    52   0.012  1
CD138870|CD138870.1 MG1-0056U-A271-B09-U.B MG1-0056 Schistosoma mansoni cDNA clone MG1-0056U-A271-B09.B, mRNA sequence.    48   0.019  2
CD151602|CD151602.1 ML1-0025G-A110-A08-U.G ML1-0025 Schistosoma mansoni cDNA clone ML1-0025G-A110-A08.G, mRNA sequence.    48   0.025  2
AV364477|AV364477.1 Mus musculus 15 days embryo embryonic body below diaphragm cDNA, RIKEN full-length enriched library, clone:8230402C21, 3' end partial sequence, similar to ddbj:Z37164 M.musculus Cctq mRNA encoding cytosolic chaperone containing TCP-1, theta subunit (CCTtheta).    50   0.046  1
AL031854|AL031854.1 S.pombe chromosome II cosmid c337.             38   0.11   2
dna update 2004. 2.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_86(AC116979|pid:none) Dictyostelium discoideum chromoso...   447   e-124
AF442548_1(AF442548|pid:none) Physarum polycephalum CCT chaperon...   319   5e-86
AK145918_1(AK145918|pid:none) Mus musculus 14 days pregnant adul...   261   2e-68
(P42932) RecName: Full=T-complex protein 1 subunit theta;       ...   260   3e-68
AB022161_1(AB022161|pid:none) Mus musculus Cctq gene for chapero...   260   3e-68
(Q3ZCI9) RecName: Full=T-complex protein 1 subunit theta;       ...   260   3e-68
AK222490_1(AK222490|pid:none) Homo sapiens mRNA for chaperonin c...   259   6e-68
D42052_1(D42052|pid:none) Homo sapiens cosmid Q7A10 (D21S246) in...   259   6e-68
BC050492_1(BC050492|pid:none) Danio rerio chaperonin containing ...   255   9e-67
AY823273_1(AY823273|pid:none) Notothenia coriiceps TCP1-theta mR...   252   1e-65
protein update 2009. 5.18
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 24.0 %: plasma membrane
	 16.0 %: nuclear
	 16.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHE274 is pla
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHE274Z
3' end seq. 
>CHE274Z.Seq
NNNNNNNNNNCTTTACATTACATTGAAAGATTCAAAATCATGTTGGTTCGTATTCAATCT
AAATTCCAATTACGTCGTGTTTGTAAAGCAATCGGTGCAACTCCATTAGTTAAATTGGGT
GCCCCTATCCCTGAGGAATTGGGTTACTGTGATGAAGTACTCGTTGAAGAGATCGGTTCA
ACCAAATGTTGTATTTTCCGTCAAAATAAAGAAGAAAGTGAAATCTCCACCATTGTAGTT
CGTGGTTCAACCAATAACATTCTCGATGATATTGAACGTGCCATCGATGATGGTGTCAAC
GTTTTCAAAGGTATGTGTAAAGATGGTAGATTCTTAGCTGGTGCTGGTGCTTTTGAAATT
GAAGCCTCACGTAAACTCCAAGCTTTTGCCGATGCTACACCAGGTCTCTCTCAATATTCA
ATTCGTCAATACGCTGAAGCTTTCGAAATCATTCCAAGAACTCTTGCTGAAACTAGTGGT
CACGACTCCTCAAAAGCAATCTCAAATATTTATGCAGCTCATACCAAAGGTAATACCAAT
TATGGTTTAGATATTGAATCTGGTCAACCAAAATCTGTACTCGAAATGGATGTTTTAGAC
GCTTTTGCTTCAAAACTTTTCGCAATTAAATTAGCTACAAACACTGCTAACACCGTTTTA
AGAGTCGATCAAATCATTATGTCTAAACCAGCTGGGGTCCAAAACCACCAAAAAGGGTCC
AACCGATGCNANATTAAATAAATAAA
Length of 3' end seq. 746
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -