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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE259
Library CH
(Link to library)
Clone ID CHE259
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHE259 (CHE259Q) /CSM/CH/CHE2-C/CHE259Q.Seq.d/
XXXXXXXXXXTATNTATGGTGGTACATATATGCTTAATAAACCAATTGAAAATATTGTTT
TCGATGAAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATGTGATA
AAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTATTC
GTTCAATTTGTATTTTGAATGGTCCAATTCCATCTGCTGATAAGAAATTTGAATCACTCC
AAATCATTATCCCACAAAAACAAGTTAAACGTCAATCAGATATGTACGTTGGTGTTATGT
CATCCGCTCATTGTGTCTGTCCAAAGGGTAAATACATTGCCATCGTTTCAGCCACTGTTG
AAACCAATGAACCAGAGAAAGAATTAGCACCAGCTTACGCTTTATTAGGTCCAATTCAAG
AGAAATTTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGTACTGCCGACAATG
TTTTCATCTCAAAATCATATGATGCNACCTCTCACTTTGNAACCACTT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---XYGGTYMLNKPIENIVFDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKVQKKGKIIR
SICILNGPIPSADKKFESLQIIIPQKQVKRQSDMYVGVMSSAHCVCPKGKYIAIVSATVE
TNEPEKELAPAYALLGPIQEKFVYISDFIEPIADGTADNVFISKSYDATSHFXTT
Translated Amino Acid sequence (All Frames) 
Frame A:
---XYGGTYMLNKPIENIVFDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKVQKKGKIIR
SICILNGPIPSADKKFESLQIIIPQKQVKRQSDMYVGVMSSAHCVCPKGKYIAIVSATVE
TNEPEKELAPAYALLGPIQEKFVYISDFIEPIADGTADNVFISKSYDATSHFXTT


Frame B:
---xmvvhiclinqlkilfsmkkrkllklhlkvkl*hviklfvihhisqikfkrkvklfv
qfvf*mvqfhllirnlnhskslshknklnvnqictlvlchplivsvqrvntlpsfqpllk
pmnqrkn*hqltly*vqfkrnlsiflislnqllmvlptmfssqnhmmxpltlxpl


Frame C:
---xwwyiya**tn*kycfr*rkeny*syi*r*ncnm**ncl*siifpk*ssker*nysf
nlyfewsnsic**ei*itpnhyptkts*tsiryvrwcyvirslclskg*ihchrfshc*n
q*treristslrfirsnsreiclyf*fh*tnc*wycrqcfhlkii*cxlslxnh
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFL394 (SFL394Q) /CSM/SF/SFL3-D/SFL394Q.Seq.d/                       1009   0.0
SFL120 (SFL120Q) /CSM/SF/SFL1-A/SFL120Q.Seq.d/                       1009   0.0
SFJ795 (SFJ795Q) /CSM/SF/SFJ7-D/SFJ795Q.Seq.d/                       1009   0.0
SFJ449 (SFJ449Q) /CSM/SF/SFJ4-C/SFJ449Q.Seq.d/                       1009   0.0
SFI510 (SFI510Q) /CSM/SF/SFI5-A/SFI510Q.Seq.d/                       1009   0.0
SFE141 (SFE141Q) /CSM/SF/SFE1-B/SFE141Q.Seq.d/                       1009   0.0
SFD673 (SFD673Q) /CSM/SF/SFD6-D/SFD673Q.Seq.d/                       1009   0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/                       1009   0.0
CHE259 (CHE259Q) /CSM/CH/CHE2-C/CHE259Q.Seq.d/                       1009   0.0
CHD258 (CHD258Q) /CSM/CH/CHD2-C/CHD258Q.Seq.d/                       1009   0.0
own update 2002. 9.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI315670|BI315670.1 saf75f12.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-2184 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   8e-06  1
AI437629|AI437629.1 sa37e09.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1505 5' similar to TR:O24653 O24653 GDI2. ;, mRNA sequence.    62   8e-06  1
BU964562|BU964562.1 sas99a12.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-12311 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   8e-06  1
BE800797|BE800797.1 sq98c12.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-1199 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   8e-06  1
AW397479|AW397479.1 sg79d05.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-2626 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   8e-06  1
BG790353|BG790353.1 sae68c10.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-3212 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   8e-06  1
CA819801|CA819801.1 sau76c08.y1 Gm-c1071 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1071-6664 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    44   5e-04  2
BE059980|BE059980.1 sn39e03.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-9653 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    44   5e-04  2
BI426472|BI426472.1 sag03f09.y1 Gm-c1080 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1080-257 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    44   5e-04  2
BU080552|BU080552.1 saq26a11.y1 Gm-c1045 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1045-5782 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    44   5e-04  2
dna update 2004. 2.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF676817_1(EF676817|pid:none) Picea sitchensis clone WS02753_I09...   202   3e-51
EF085049_1(EF085049|pid:none) Picea sitchensis clone WS0297_P09 ...   202   3e-51
BT071197_1(BT071197|pid:none) Picea sitchensis clone WS0279_A10 ...   198   6e-50
AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ...   196   2e-49
AF130987_1(AF130987|pid:none) Rattus norvegicus RAB GDP dissocia...   195   6e-49
(O97555) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   195   6e-49
(P50398) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   195   6e-49
X74402_1(X74402|pid:none) R.norvegicus rab GDI alpha mRNA.            195   6e-49
(P21856) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   194   1e-48
(Q8HXX7) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   194   1e-48
protein update 2009. 5.18
PSORT 

 psg: 0.65  gvh: 0.24  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CHE259 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHE259Z
3' end seq. 
>CHE259Z.Seq
NNNNNNNNNNTATNTATGGTGGTACATATATGCTTAATAAACCAATTGAAAATATTGTTT
TCGATGAAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGAAACTGTAACATGTGATA
AAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTATTC
GTTCAATTTGTATTTTGAATGGTCCAATTCCATCTGCTGATAAGAAATTTGAATCACTCC
AAATCATTATCCCACAAAAACAAGTTAAACGTCAATCAGATATGTACGTTGGTGTTATGT
CATCCGCTCATTGTGTCTGTCCAAAGGGTAAATACATTGCCATCGTTTCAGCCACTGTTG
AAACCAATGAACCAGAGAAAGAATTAGCACCAGCTTACGCTTTATTAGGTCCAATTCAAG
AGAAATTTGTCTATATTTCTGATTTCATTGAACCAATTGCTGATGGTACTGCCGACAATG
TTTTCATCTCAAAATCATATGATGCNACCTCTCACTTTGNAACCACTT
Length of 3' end seq. 528
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -