>CHE243 (CHE243Q) /CSM/CH/CHE2-B/CHE243Q.Seq.d/
XXXXXXXXXXGNCGATCTATTAGCTGAGTGGTATTGATGTCCANCAAGTATCACTCGTTA
TCANNTTTGATTTACCAACCAACATTGAAAATTACATTCATNGTATCGGTCGTTCAGGTC
GTNTCGGTNGTAAGGGTGTTGCCATCGACTTTATCACTGACGCTGAAAGAGGTCAAATCG
ATGAATTATCTCGTCATTACTGATACNTACATTG

---rsis*VVLMSXKYHSLSXLIYQPTLKITFXVSVVQVVSVVRVLPSTLSLTLKEVKSM
NYLVITDTYI

Frame A:
---xiy*lsgidvxqvslvixfdlptnienyihxigrsgrxgxkgvaidfitdaergqid
elsrhy*yxh


Frame B:
---rsis*VVLMSXKYHSLSXLIYQPTLKITFXVSVVQVVSVVRVLPSTLSLTLKEVKSM
NYLVITDTYI


Frame C:
---dllaewy*cpxsitryxx*ftnqh*klhsxyrsfrsxrx*gcchrlyh*r*krsnr*
iissllixtl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE243 (CHE243Q) /CSM/CH/CHE2-B/CHE243Q.Seq.d/                        359   1e-98
CHE143 (CHE143Q) /CSM/CH/CHE1-B/CHE143Q.Seq.d/                        307   4e-83
VSJ133 (VSJ133Q) /CSM/VS/VSJ1-B/VSJ133Q.Seq.d/                        299   9e-81
VSH864 (VSH864Q) /CSM/VS/VSH8-C/VSH864Q.Seq.d/                        299   9e-81
VSE235 (VSE235Q) /CSM/VS/VSE2-B/VSE235Q.Seq.d/                        299   9e-81
VFO756 (VFO756Q) /CSM/VF/VFO7-C/VFO756Q.Seq.d/                        299   9e-81
VFN391 (VFN391Q) /CSM/VF/VFN3-D/VFN391Q.Seq.d/                        299   9e-81
VFN268 (VFN268Q) /CSM/VF/VFN2-C/VFN268Q.Seq.d/                        299   9e-81
VFM404 (VFM404Q) /CSM/VF/VFM4-A/VFM404Q.Seq.d/                        299   9e-81
VFL725 (VFL725Q) /CSM/VF/VFL7-B/VFL725Q.Seq.d/                        299   9e-81

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U78759|U78759.1 Dictyostelium discoideum IfdA (ifdA) mRNA, partial cds.   299   8e-78  1
CF245450|CF245450.1 Fcylcold195 Fragilariopsis cylindrus SMART cDNA library (Clontech) Fragilariopsis cylindrus cDNA clone Antarctic 5', mRNA sequence.    88   6e-14  1
CF925067|IF42_MOUSE Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II), mRNA sequence.    52   2e-11  2
CF854610|CF854610.1 psML001xB03f USDA-IFAFS:Expression of Phytophthora sojae genes during infection and propagation_sML Phytophthora sojae cDNA clone sML001B03 5, mRNA sequence.    64   8e-07  1
CF858645|CF858645.1 psZG001xH24f USDA-IFAFS:Expression of Phytophthora sojae genes during infection and propagation_sZG Phytophthora sojae cDNA clone sZG001H24 5, mRNA sequence.    64   8e-07  1
CF864233|CF864233.1 psZS009xJ21f USDA-IFAFS:Expression of Phytophthora sojae genes during infection and propagation_sZS Phytophthora sojae cDNA clone sZS009J21 5, mRNA sequence.    64   8e-07  1
BG660221|BG660221.1 TgESTzya05b08.y1 TgVEG118 Tachyzoite cDNA Library Toxoplasma gondii cDNA clone TgESTzya05b08.y1 5' similar to SW:IF4A_SCHPO P47943 EUKARYOTIC INITIATION FACTOR 4A ;, mRNA sequence.    62   3e-06  1
BG660011|BG660011.1 TgESTzya04e09.y1 TgVEG118 Tachyzoite cDNA Library Toxoplasma gondii cDNA clone TgESTzya04e09.y1 5' similar to SW:IF4A_SCHPO P47943 EUKARYOTIC INITIATION FACTOR 4A ;, mRNA sequence.    62   3e-06  1
CB300299|CB300299.1 TgESTzyf84f07.y1 TgME49 B7 Tachyzoite cDNA Library 2 Toxoplasma gondii cDNA clone TgESTzyf84f07.y1 5' similar to SW:IF4A_CANAL P87206 EUKARYOTIC INITIATION FACTOR 4A ;, mRNA sequence.    62   3e-06  1
CB022555|CB022555.1 TgESTzyd21h10.y1 TgRH Tachyzoite Norm 7 cDNA Library Toxoplasma gondii cDNA clone TgESTzyd21h10.y1 5' similar to SW:IF4A_SCHPO P47943 EUKARYOTIC INITIATION FACTOR 4A ;, mRNA sequence.    62   3e-06  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U78759_1(U78759|pid:none) Dictyostelium discoideum IfdA (ifdA) m...   103   2e-21
DQ440212_1(DQ440212|pid:none) Aedes aegypti clone AET-2104 initi...    78   8e-14
AJ320155_1(AJ320155|pid:none) Toxoplasma gondii mRNA for eukaryo...    77   1e-13
(P27639) RecName: Full=Eukaryotic initiation factor 4A;         ...    77   2e-13
U13876_4(U13876|pid:none) Caenorhabditis elegans cosmid F57B9, c...    77   2e-13
(A5DVM3) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    77   2e-13
CP001142_274(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...    77   2e-13
(A7TK55) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    76   3e-13
(Q6CXT4) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    76   3e-13
(Q75BL8) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    76   3e-13

 psg: 0.82  gvh: 0.56  alm: 0.29  top: 0.50  tms: 0.07  mit: 0.44  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.45  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: Golgi
	 16.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHE243 is end

>CHE243Z.Seq
NNNNNNNNNNGNCGATCTATTAGCTGAGTGGTATTGATGTCCANCAAGTATCACTCGTTA
TCANNTTTGATTTACCAACCAACATTGAAAATTACATTCATNGTATCGGTCGTTCAGGTC
GTNTCGGTNGTAAGGGTGTTGCCATCGACTTTATCACTGACGCTGAAAGAGGTCAAATCG
ATGAATTATCTCGTCATTACTGATACNTACATTG