CHE242
Library CH
(Link to library)
Clone ID CHE242
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHE242 (CHE242Q) /CSM/CH/CHE2-B/CHE242Q.Seq.d/
XXXXXXXXXXTAANATTAAAAGGGGGNAAGCAAATTTTTGTTAAAANCTTTCCNTNGGAA
AGCCCATCCCTTNANAANGTTGAAGGTTTTGANAACATTGAAAATNTTAAAAGCCAANAT
CCAAANANAAAAAAGGGTTTCCCNCCAGATCAANCAAGGTTTTNTTTTCGGTTGGTAAAC
AAATAAAAANATGGTGGNACTTTTTTCGGACTATAACATTTCAAAAGGAATCCCCCTCTC
CACTTAGTTTTAAGATTAANAGGTGGTATGCAAATTTTTGTTAAAACTCTCACTGGTAAA
ACCAATCACTTTAGAAGTTGAAGGTTCTGATAACATTGAAAATGTAAAGGCTAAAATTCA
AGATAAAGAAGGTATTTCCACCAGATCAACAACGTNTCATTTTTGCTGGTAAACAATTGG
AAGATGGTCGTACTCTCTCTGACTATAACATTCAAAAGGAATCAACTCTTCACTTAGTTT
TAANATTAANAGGTGGTATGCAAATNTTTGTTAAAACTCTCACTGGTAAAACTATCACTT
TGGAAGTTGAAGGTTNTGATAATATTGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAG
GTATTCCACCAGATCAACAAAGATTAATNTTTGCCGGTAAACAATTAGAAGATGGTCGNA
CTCTTTCTGACTACAATATTCAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAANAG
GTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACNATCNCTTTAGAAGTTGAAG
GTTCTGATAACATTGAAAATGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCNCCAG
ATCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGGTCGNACTCTCTCAGATT
ATAAT
sequence update 2002. 9.10
Translated Amino Acid sequence
---xikrgxanfc*xlsxgkpipxxx*rf*xh*kx*kpxskxkkgfpxrsxkvxfsvgkq
ikxwwxffrtitfqkespsplsfkixrwyanfc*nshw*nqsl*klkvlitlkm*RLKFK
IKKVFPPDQQRXIFAGKQLEDGRTLSDYNIQKESTLHLVLXLXGGMQXFVKTLTGKTITL
EVEGXDNIENVKAKIQDKEGIPPDQQRLXFAGKQLEDGRTLSDYNIQKESTLHLVLRLXG
GMQIFVKTLTGKTIXLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
N


Translated Amino Acid sequence (All Frames)
Frame A:
---xikrgxanfc*xlsxgkpipxxx*rf*xh*kx*kpxskxkkgfpxrsxkvxfsvgkq
ikxwwxffrtitfqkespsplsfkixrwyanfc*nshw*nqsl*klkvlitlkm*RLKFK
IKKVFPPDQQRXIFAGKQLEDGRTLSDYNIQKESTLHLVLXLXGGMQXFVKTLTGKTITL
EVEGXDNIENVKAKIQDKEGIPPDQQRLXFAGKQLEDGRTLSDYNIQKESTLHLVLRLXG
GMQIFVKTLTGKTIXLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
N


Frame B:
---xlkggkqifvkxfpxespslxxvegfxnienxksqxpxxkkgfppdqxrfxfrlvnk
*kxggtffgl*hfkrnpplhlvlrlxggmqifvktltgktnhfrs*rf**h*kckg*nsr
*rryfhqinnvsfllvnnwkmvvlsltitfkrnqlft*f*x*xvvckxllklslvklslw
klkvxiilkm*rlkskikkvfhqinkd*xlpvnn*kmvxlflttifkknplsi*f*d*xv
vcksllklslvkxsl*klkvlitlkmlkprskikkvfxqinkd*slpvnn*kmvxlsqii


Frame C:
---x*kgxskfllkxfxxkahpxxxlkvlxtlkxlkaxiqxxkrvsxqixqgfxfgw*tn
kxmvxlfsdyniskgiplst*f*d*xvvckfllklslvkpitlevegsdnienvkakiqd
kegistrsttxhfcw*tigrwsysl*l*hskginsslsfxixrwyanxc*nshw*nyhfg
s*rx**y*kckg*npr*rrystrstkinxcr*tirrwsxsf*lqyskrihspfsfkixrw
yanlc*nshw*nxxfrs*rf**h*kc*sqdpr*rrysxrstkinlcr*tirrwsxslrl*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHE242 (CHE242Q) /CSM/CH/CHE2-B/CHE242Q.Seq.d/ 1590 0.0
VFK831 (VFK831Q) /CSM/VF/VFK8-B/VFK831Q.Seq.d/ 1231 0.0
AFO288 (AFO288Q) /CSM/AF/AFO2-D/AFO288Q.Seq.d/ 1229 0.0
CFF122 (CFF122Q) /CSM/CF/CFF1-A/CFF122Q.Seq.d/ 1211 0.0
CHB665 (CHB665Q) /CSM/CH/CHB6-C/CHB665Q.Seq.d/ 1207 0.0
SFH395 (SFH395Q) /CSM/SF/SFH3-D/SFH395Q.Seq.d/ 1205 0.0
CFF694 (CFF694Q) /CSM/CF/CFF6-D/CFF694Q.Seq.d/ 1193 0.0
AFH836 (AFH836Q) /CSM/AF/AFH8-B/AFH836Q.Seq.d/ 1193 0.0
SFF654 (SFF654Q) /CSM/SF/SFF6-C/SFF654Q.Seq.d/ 1191 0.0
AFD570 (AFD570Q) /CSM/AF/AFD5-C/AFD570Q.Seq.d/ 1189 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 977 0.0 7
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 757 0.0 3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 757 0.0 3
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 482 0.0 7
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 630 0.0 7
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 387 e-162 6
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 379 e-162 6
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 379 e-162 6
CF181994|CF181994.1 ISO4G8F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence. 426 e-148 5
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence. 426 e-148 5
dna update 2004. 2.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CR380950_216(CR380950|pid:none) Candida glabrata strain CBS138 c... 318 e-106
DQ914562_1(DQ914562|pid:none) Porphyra yezoensis polyubiquitin (... 318 e-106
CR382131_778(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 318 e-106
AE016816_144(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 318 e-106
AL031854_8(AL031854|pid:none) S.pombe chromosome II cosmid c337.... 318 e-106
AJ243800_3(AJ243800|pid:none) Kluyveromyces lactis rim101 (parti... 318 e-106
UQBY(D29456;S64790;B22696;A22696) polyubiquitin 5 - yeast (Sacch... 318 e-106
DQ914563_1(DQ914563|pid:none) Porphyra yezoensis polyubiquitin (... 320 e-106
X98063_1(X98063|pid:none) P.sylvestris mRNA for polyubiquitin. 317 e-106
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 332 e-105
protein update 2009. 5.18
PSORT

psg: 0.51 gvh: 0.60 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 1.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
40.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for CHE242 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHE242Z
3' end seq.
>CHE242Z.Seq
NNNNNNNNNNTAANATTAAAAGGGGGNAAGCAAATTTTTGTTAAAANCTTTCCNTNGGAA
AGCCCATCCCTTNANAANGTTGAAGGTTTTGANAACATTGAAAATNTTAAAAGCCAANAT
CCAAANANAAAAAAGGGTTTCCCNCCAGATCAANCAAGGTTTTNTTTTCGGTTGGTAAAC
AAATAAAAANATGGTGGNACTTTTTTCGGACTATAACATTTCAAAAGGAATCCCCCTCTC
CACTTAGTTTTAAGATTAANAGGTGGTATGCAAATTTTTGTTAAAACTCTCACTGGTAAA
ACCAATCACTTTAGAAGTTGAAGGTTCTGATAACATTGAAAATGTAAAGGCTAAAATTCA
AGATAAAGAAGGTATTTCCACCAGATCAACAACGTNTCATTTTTGCTGGTAAACAATTGG
AAGATGGTCGTACTCTCTCTGACTATAACATTCAAAAGGAATCAACTCTTCACTTAGTTT
TAANATTAANAGGTGGTATGCAAATNTTTGTTAAAACTCTCACTGGTAAAACTATCACTT
TGGAAGTTGAAGGTTNTGATAATATTGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAG
GTATTCCACCAGATCAACAAAGATTAATNTTTGCCGGTAAACAATTAGAAGATGGTCGNA
CTCTTTCTGACTACAATATTCAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAANAG
GTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACNATCNCTTTAGAAGTTGAAG
GTTCTGATAACATTGAAAATGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCNCCAG
ATCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGGTCGNACTCTCTCAGATT
ATAAT
Length of 3' end seq. 905
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -