CHE236
Library CH
(Link to library)
Clone ID CHE236
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13888-1
Original site URL
Representative seq. ID CHE236P
(Link to Original site)
Representative DNA sequence
>CHE236 (CHE236Q) /CSM/CH/CHE2-B/CHE236Q.Seq.d/
GCCTACTGGTTTTTTATTTTTATTTTCACAACTAATAACAGACTAAATTAATAAAGATAA
AAATAAAAATAAACAAACCAAATTAAAAATATTAAATAAAATGGAATCTAACACAAATTC
TCAAGGNCAAGGTATTATTCCTCAATCATATCATTCATCAATTTTCTTTTCAATTTCAAA
AGGATCTGATAAGATNGGNGGATTATTAGAGTATTTAGAGATTATTAAAAAACATAATAT
CAACATTACAAGAATTGAATCAAGACCATCAAAAACCGAAAAAAAAGATTATGATTTCTT
TTTAGATTTAGAATATCCAACAGAAAACAATAAAGAAGTTGAAAAGGTTATTAAAGATCT
XXXXXXXXXXCAGTACAAGGTTTACTCTCTGCTAGAGATTTCTTAAATGGTTTAGCTTTC
CGTGTATTCCATGCAACTCAATATATTAGACATCCATCCGTACCATTATATACACCAGAA
CCAGATTGTTGTCATGAATTATTAGGTCATGTTCCATTATTAGCTGATCCTGATTTCGCT
GATTTTAGTCAAGAGATTGGTTTAGCTTCAATTGGTGCTTCTGATGAAGATATTCAATTA
CTTAGTACTTGTTATTGGTTTACAGTTGAATTTGGATTATGTAAAGAAGGTGATACAATT
AGAGCATATGGTGCAGGTATTTTATCATCAACAGGTGAAATGGAACACTTTTTAACTGAT
AAAGCAAAAAAATTACCATTTAATCCATTTGACGCATGCAATACTGAATATCCAATTACA
ACATTCCAACCACTTTACTATGTTGCAGAAAGTTTCCAAAAAGCAAAAGAACAAATGAGA
CAATTTGCTGATAGCTTTAAAAAACCATTTTCAATTCGTTACAATTCATACACTCAATCA
ATTGAAATACTTNATAACAAAGATANATTATT
sequence update 2002.10.25
Translated Amino Acid sequence
ptgflflfsqlitd*INKDKNKNKQTKLKILNKMESNTNSQGQGIIPQSYHSSIFFSISK
GSDKXGGLLEYLEIIKKHNINITRIESRPSKTEKKDYDFFLDLEYPTENNKEVEKVIKD-
--

---VQGLLSARDFLNGLAFRVFHATQYIRHPSVPLYTPEPDCCHELLGHVPLLADPDFAD
FSQEIGLASIGASDEDIQLLSTCYWFTVEFGLCKEGDTIRAYGAGILSSTGEMEHFLTDK
AKKLPFNPFDACNTEYPITTFQPLYYVAESFQKAKEQMRQFADSFKKPFSIRYNSYTQSI
EILXNKDXL


Translated Amino Acid sequence (All Frames)
Frame A:
aywffififttnnrln**r*k*k*tnqiknik*ngi*hkfsrxryyssiisfinflfnfk
ri**dxxiirvfrdy*kt*yqhykn*iktiknrkkrl*flfrfrisnrkq*rs*kgy*rs
---

---qykvyslleis*mv*lsvysmqlnildihpyhyihqnqivvmny*vmfhy*lilisl
ilvkrlv*lqlvllmkifnylvlviglqlnldyvkkviqlehmvqvfyhqqvkwntf*li
kqknyhlihlthailniqlqhsnhftmlqkvskkqknk*dnllialknhfqfvtihtlnq
lkyxitkixy

Frame B:
ptgflflfsqlitd*INKDKNKNKQTKLKILNKMESNTNSQGQGIIPQSYHSSIFFSISK
GSDKXGGLLEYLEIIKKHNINITRIESRPSKTEKKDYDFFLDLEYPTENNKEVEKVIKD-
--

---strftlc*rflkwfsfpcipcnsiy*tsirtiiytrtrlls*iirscsiis*s*fr*
f*srdwfsfnwcf**rysit*ylllvys*iwim*rr*yn*siwcryfiinr*ngtlfn**
skkiti*si*rmqy*isnynipttllccrkfpkskrtnetic**l*ktifnslqfihsin
*ntx*qrxii

Frame C:
llvfyfyfhn**qtklikikikinkpn*ky*ikwnltqilkxkvlflnhiihqfsfqfqk
dlirxxdy*si*rllkniistlqelnqdhqkpkkkimisf*i*niqqktikklkrllki-
--

---VQGLLSARDFLNGLAFRVFHATQYIRHPSVPLYTPEPDCCHELLGHVPLLADPDFAD
FSQEIGLASIGASDEDIQLLSTCYWFTVEFGLCKEGDTIRAYGAGILSSTGEMEHFLTDK
AKKLPFNPFDACNTEYPITTFQPLYYVAESFQKAKEQMRQFADSFKKPFSIRYNSYTQSI
EILXNKDXL

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHE236 (CHE236Q) /CSM/CH/CHE2-B/CHE236Q.Seq.d/ 1469 0.0
SSM681 (SSM681Q) /CSM/SS/SSM6-D/SSM681Q.Seq.d/ 1053 0.0
SFK632 (SFK632Q) /CSM/SF/SFK6-B/SFK632Q.Seq.d/ 1053 0.0
SFK602 (SFK602Q) /CSM/SF/SFK6-A/SFK602Q.Seq.d/ 1053 0.0
SFK580 (SFK580Q) /CSM/SF/SFK5-D/SFK580Q.Seq.d/ 1053 0.0
SFJ456 (SFJ456Q) /CSM/SF/SFJ4-C/SFJ456Q.Seq.d/ 1053 0.0
SFJ372 (SFJ372Q) /CSM/SF/SFJ3-C/SFJ372Q.Seq.d/ 1053 0.0
SFI142 (SFI142Q) /CSM/SF/SFI1-B/SFI142Q.Seq.d/ 1053 0.0
SFC218 (SFC218Q) /CSM/SF/SFC2-A/SFC218Q.Seq.d/ 1053 0.0
SFB840 (SFB840Q) /CSM/SF/SFB8-B/SFB840Q.Seq.d/ 1053 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG225890|0 90 8e-14 1
CN124807|CN124807.1 RHOH1_7_B07.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_7_B07_A002 3', mRNA sequence. 48 8e-09 3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 3e-04 18
Z81057|Z81057.1 Caenorhabditis elegans cosmid F10D11. 48 0.014 5
BU770913|BU770913.1 SJEDBC07 SJE Schistosoma japonicum cDNA, mRNA sequence. 48 0.016 2
CC139550|CC139550.1 NDL.48G14.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.48G14, DNA sequence. 50 0.065 1
CC852580|CC852580.1 NDL.130C7.T7 Notre Dame Liverpool Aedes aegypti genomic clone NotreDame Liverpool-130C7, genomic survey sequence. 50 0.065 1
AC026213|AC026213.4 Homo sapiens chromosome 3 clone RP11-708D10 map 3p, WORKING DRAFT SEQUENCE, 12 unordered pieces. 40 0.10 7
AE010566|AE010566.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 108 of 197 of the complete genome. 40 0.25 4
BQ548435|BQ548435.1 rd10e09.y1 Meloidogyne incognita egg SL1 TOPO v1 Meloidogyne incognita cDNA 5', mRNA sequence. 48 0.26 1
dna update 2004. 9.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54XS1) RecName: Full=Probable phenylalanine-4-hydroxylase; ... 379 e-104
BC056537_1(BC056537|pid:none) Danio rerio phenylalanine hydroxyl... 266 5e-70
AY330224_1(AY330224|pid:none) Danio rerio Pah mRNA, complete cds... 266 5e-70
AY615523_1(AY615523|pid:none) Gallus gallus neuronal tryptophan ... 258 2e-67
BC013458_1(BC013458|pid:none) Mus musculus phenylalanine hydroxy... 256 9e-67
(Q0EAB8) RecName: Full=Tryptophan 5-hydroxylase 2; EC=1... 256 9e-67
(Q8IWU9) RecName: Full=Tryptophan 5-hydroxylase 2; EC=1... 255 2e-66
DQ479389_1(DQ479389|pid:none) Aplysia californica tryptophan 5-m... 255 2e-66
BC114499_1(BC114499|pid:none) Homo sapiens tryptophan hydroxylas... 255 2e-66
BC114442_1(BC114442|pid:none) Homo sapiens tryptophan hydroxylas... 255 2e-66
protein update 2009. 3.30
PSORT

psg: 0.58 gvh: 0.35 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CHE236 is cyt

5' end seq. ID CHE236F
5' end seq.
>CHE236F.Seq
GCCTACTGGTTTTTTATTTTTATTTTCACAACTAATAACAGACTAAATTAATAAAGATAA
AAATAAAAATAAACAAACCAAATTAAAAATATTAAATAAAATGGAATCTAACACAAATTC
TCAAGGNCAAGGTATTATTCCTCAATCATATCATTCATCAATTTTCTTTTCAATTTCAAA
AGGATCTGATAAGATNGGNGGATTATTAGAGTATTTAGAGATTATTAAAAAACATAATAT
CAACATTACAAGAATTGAATCAAGACCATCAAAAACCGAAAAAAAAGATTATGATTTCTT
TTTAGATTTAGAATATCCAACAGAAAACAATAAAGAAGTTGAAAAGGTTATTAAAGATCT
NNNNNNNNNN
Length of 5' end seq. 370
3' end seq. ID CHE236Z
3' end seq.
>CHE236Z.Seq
NNNNNNNNNNCAGTACAAGGTTTACTCTCTGCTAGAGATTTCTTAAATGGTTTAGCTTTC
CGTGTATTCCATGCAACTCAATATATTAGACATCCATCCGTACCATTATATACACCAGAA
CCAGATTGTTGTCATGAATTATTAGGTCATGTTCCATTATTAGCTGATCCTGATTTCGCT
GATTTTAGTCAAGAGATTGGTTTAGCTTCAATTGGTGCTTCTGATGAAGATATTCAATTA
CTTAGTACTTGTTATTGGTTTACAGTTGAATTTGGATTATGTAAAGAAGGTGATACAATT
AGAGCATATGGTGCAGGTATTTTATCATCAACAGGTGAAATGGAACACTTTTTAACTGAT
AAAGCAAAAAAATTACCATTTAATCCATTTGACGCATGCAATACTGAATATCCAATTACA
ACATTCCAACCACTTTACTATGTTGCAGAAAGTTTCCAAAAAGCAAAAGAACAAATGAGA
CAATTTGCTGATAGCTTTAAAAAACCATTTTCAATTCGTTACAATTCATACACTCAATCA
ATTGAAATACTTNATAACAAAGATANATTATT
Length of 3' end seq. 572
Connected seq. ID CHE236P
Connected seq.
>CHE236P.Seq
GCCTACTGGTTTTTTATTTTTATTTTCACAACTAATAACAGACTAAATTAATAAAGATAA
AAATAAAAATAAACAAACCAAATTAAAAATATTAAATAAAATGGAATCTAACACAAATTC
TCAAGGNCAAGGTATTATTCCTCAATCATATCATTCATCAATTTTCTTTTCAATTTCAAA
AGGATCTGATAAGATNGGNGGATTATTAGAGTATTTAGAGATTATTAAAAAACATAATAT
CAACATTACAAGAATTGAATCAAGACCATCAAAAACCGAAAAAAAAGATTATGATTTCTT
TTTAGATTTAGAATATCCAACAGAAAACAATAAAGAAGTTGAAAAGGTTATTAAAGATCT
----------CAGTACAAGGTTTACTCTCTGCTAGAGATTTCTTAAATGGTTTAGCTTTC
CGTGTATTCCATGCAACTCAATATATTAGACATCCATCCGTACCATTATATACACCAGAA
CCAGATTGTTGTCATGAATTATTAGGTCATGTTCCATTATTAGCTGATCCTGATTTCGCT
GATTTTAGTCAAGAGATTGGTTTAGCTTCAATTGGTGCTTCTGATGAAGATATTCAATTA
CTTAGTACTTGTTATTGGTTTACAGTTGAATTTGGATTATGTAAAGAAGGTGATACAATT
AGAGCATATGGTGCAGGTATTTTATCATCAACAGGTGAAATGGAACACTTTTTAACTGAT
AAAGCAAAAAAATTACCATTTAATCCATTTGACGCATGCAATACTGAATATCCAATTACA
ACATTCCAACCACTTTACTATGTTGCAGAAAGTTTCCAAAAAGCAAAAGAACAAATGAGA
CAATTTGCTGATAGCTTTAAAAAACCATTTTCAATTCGTTACAATTCATACACTCAATCA
ATTGAAATACTTNATAACAAAGATANATTATT
Length of connected seq. 922
Full length Seq ID -
Full length Seq. -
Length of full length seq. -