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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE205
Library CH
(Link to library)
Clone ID CHE205
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12950-1|Contig-U15652-1
Original site URL
Representative seq. ID CHE205P
(Link to Original site)
Representative DNA sequence 
>CHE205 (CHE205Q) /CSM/CH/CHE2-A/CHE205Q.Seq.d/
ACCACCACAATTAACACCAATAAAACCAAACATTACACANGAAGAACAAGATTNATTANN
ATAATATTGTAAAAAATGAATCTATAATTCCAATGTGGCCAANNATACCAATTNGTATTA
ATAATAATAATNCTATTAATAACAATAATNNTXXXXXXXXXXCGACAGCAACNNCGGCAT
CAATAAAAGTTGNACCANAAACGNANGCAGCATCAGGANGGTCANTTAANNCAGACCTTG
ATGATGAAATTCNTGGTGGATATTTATCAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
hhn*hq*NQTLHXKNKIXXXNIVKNESIIPMWPXIPIXINNNNXINNNNX---

---TATXASIKVXPXTXAASGXSXXXDLDDEIXGGYLS
Translated Amino Acid sequence (All Frames) 
Frame A:
tttintnktkhytxrtrxixiil*kmnl*fqcgqxyqxvliiixllitix---

---rqqxrhq*klxxkrxqhqxgxlxqtlmmkfxvdiyq

Frame B:
ppqltpikpnitxeeqdxlx*yckk*iynsnvaxxtnxy****xy**q*x---

---dsnxginksxtxnxxsirxvx*xrp***nswwifik

Frame C:
hhn*hq*NQTLHXKNKIXXXNIVKNESIIPMWPXIPIXINNNNXINNNNX---

---TATXASIKVXPXTXAASGXSXXXDLDDEIXGGYLS
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE205 (CHE205Q) /CSM/CH/CHE2-A/CHE205Q.Seq.d/                        353   9e-97
VHL745 (VHL745Q) /CSM/VH/VHL7-B/VHL745Q.Seq.d/                        214   5e-55
VHL639 (VHL639Q) /CSM/VH/VHL6-B/VHL639Q.Seq.d/                        214   5e-55
VHK326 (VHK326Q) /CSM/VH/VHK3-B/VHK326Q.Seq.d/                        214   5e-55
VFB447 (VFB447Q) /CSM/VF/VFB4-B/VFB447Q.Seq.d/                        214   5e-55
SHL353 (SHL353Q) /CSM/SH/SHL3-C/SHL353Q.Seq.d/                        214   5e-55
CHP750 (CHP750Q) /CSM/CH/CHP7-C/CHP750Q.Seq.d/                        214   5e-55
CHP378 (CHP378Q) /CSM/CH/CHP3-D/CHP378Q.Seq.d/                        214   5e-55
CHN218 (CHN218Q) /CSM/CH/CHN2-A/CHN218Q.Seq.d/                        214   5e-55
CHL590 (CHL590Q) /CSM/CH/CHL5-D/CHL590Q.Seq.d/                        214   5e-55
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    48   2e-07  3
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    46   1e-06  4
BX154986|BX154986.1 Danio rerio genomic clone DKEY-114G23, genomic survey sequence.    44   6e-06  2
AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    46   1e-05  3
BX195683|BX195683.1 Danio rerio genomic clone DKEY-214O10, genomic survey sequence.    38   2e-05  3
AL987387|AL987387.1 Danio rerio genomic clone DKEY-61N5, genomic survey sequence.    46   2e-05  2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    48   4e-05  2
AL591388|AL591388.9 Zebrafish DNA sequence from clone BUSM1-255P14 in linkage group 7.    52   4e-05  3
BX119316|BX119316.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-183E4.    44   7e-05  4
BX234563|BX234563.1 Danio rerio genomic clone DKEY-253C15, genomic survey sequence.    46   1e-04  3
dna update 2004. 9.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q550C1) RecName: Full=Protein TAPT1 homolog;                          33   3.8
AC116977_15(AC116977|pid:none) Dictyostelium discoideum chromoso...    33   3.8
protein update 2008.10.26
PSORT 

 psg: 0.70  gvh: 0.46  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CHE205 is cyt
5' end seq. ID CHE205F
5' end seq. 
>CHE205F.Seq
ACCACCACAATTAACACCAATAAAACCAAACATTACACANGAAGAACAAGATTNATTANN
ATAATATTGTAAAAAATGAATCTATAATTCCAATGTGGCCAANNATACCAATTNGTATTA
ATAATAATAATNCTATTAATAACAATAATNNTNNNNNNNNNN
Length of 5' end seq. 162
3' end seq. ID CHE205Z
3' end seq. 
>CHE205Z.Seq
NNNNNNNNNNCGACAGCAACNNCGGCATCAATAAAAGTTGNACCANAAACGNANGCAGCA
TCAGGANGGTCANTTAANNCAGACCTTGATGATGAAATTCNTGGTGGATATTTATCAAA
Length of 3' end seq. 119
Connected seq. ID CHE205P
Connected seq. 
>CHE205P.Seq
ACCACCACAATTAACACCAATAAAACCAAACATTACACANGAAGAACAAGATTNATTANN
ATAATATTGTAAAAAATGAATCTATAATTCCAATGTGGCCAANNATACCAATTNGTATTA
ATAATAATAATNCTATTAATAACAATAATNNT----------CGACAGCAACNNCGGCAT
CAATAAAAGTTGNACCANAAACGNANGCAGCATCAGGANGGTCANTTAANNCAGACCTTG
ATGATGAAATTCNTGGTGGATATTTATCAAA
Length of connected seq. 261
Full length Seq ID -
Full length Seq. -
Length of full length seq. -