>CHE204 (CHE204Q) /CSM/CH/CHE2-A/CHE204Q.Seq.d/
XXXXXXXXXXATNNANTNNNNNTNNNTTNNCANAGTTGGGATTATTANNTNATCCNCGTT
TTANNATTTGTTTTGTAATGGATCNAACATTAATGTTTAAGGTAACAACCTATAGAACCA
TCAATGGTAAAGAGAGAACTAAAATTAAACATAATGTAAAAGCATTGGAAGTAATTTGGA
AACATCAACATTTAGGTAAATTCTTTAGTATGAAAAATACTTTACATGTTGATGATCTCT
CCAAAAACTTTGCAATGAATCCAAAGAATGGTGTACATG

---XXXXXXXXLGLLXXPRFXICFVMDXTLMFKVTTYRTINGKERTKIKHNVKALEVIWK
HQHLGKFFSMKNTLHVDDLSKNFAMNPKNGVH

Frame A:
---XXXXXXXXLGLLXXPRFXICFVMDXTLMFKVTTYRTINGKERTKIKHNVKALEVIWK
HQHLGKFFSMKNTLHVDDLSKNFAMNPKNGVH


Frame B:
---xxxxxxxswdyxxixvlxfvl*wixh*clr*qpiepsmvkrelklnim*khwk*fgn
ini*vnslv*kilymlmispktlq*iqrmvym


Frame C:
---xxxxxxxvgiixxsxfxxlfcngsninv*gnnl*nhqw*ren*n*t*cksigsnlet
stfr*il*yekyftc**slqklcneskewct

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM888 (SSM888Q) /CSM/SS/SSM8-D/SSM888Q.Seq.d/                        446   e-125
SSK715 (SSK715Q) /CSM/SS/SSK7-A/SSK715Q.Seq.d/                        446   e-125
SSD374 (SSD374Q) /CSM/SS/SSD3-D/SSD374Q.Seq.d/                        446   e-125
SHE447 (SHE447Q) /CSM/SH/SHE4-B/SHE447Q.Seq.d/                        446   e-125
SFL188 (SFL188Q) /CSM/SF/SFL1-D/SFL188Q.Seq.d/                        446   e-125
SFH658 (SFH658Q) /CSM/SF/SFH6-C/SFH658Q.Seq.d/                        446   e-125
SFG351 (SFG351Q) /CSM/SF/SFG3-C/SFG351Q.Seq.d/                        446   e-125
SFF746 (SFF746Q) /CSM/SF/SFF7-B/SFF746Q.Seq.d/                        446   e-125
CHE204 (CHE204Q) /CSM/CH/CHE2-A/CHE204Q.Seq.d/                        446   e-125
CHE112 (CHE112Q) /CSM/CH/CHE1-A/CHE112Q.Seq.d/                        446   e-125

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   446   e-122  1
AL137183|AL137183.7 Human DNA sequence from clone RP1-319D23 on chromosome 6. Contains  GSSs.    46   0.25   1
CA050141|CA050141.1 ssalsrkc008012 kidney Salmo salar cDNA, mRNA sequence.    36   0.53   2
AC106934|AC106934.5 Rattus norvegicus clone CH230-128J5, WORKING DRAFT SEQUENCE, 3 unordered pieces.    38   0.82   4
CB555824|CB555824.1 MMSP0013_F03 MMSP Macaca mulatta cDNA, mRNA sequence.    32   0.89   3
BX649405|BX649405.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-190M16.    44   0.99   1
AC069494|AC069494.8 Homo sapiens chromosome 18, clone RP11-743K16, complete sequence.    44   0.99   1
AP006281|AP006281.2 Homo sapiens genomic DNA, chromosome 11 clone:CTC-828L2, complete sequence.    34   1.1    3
AC134247|AC134247.2 Mus musculus chromosome UNK clone RP23-334P22, WORKING DRAFT SEQUENCE, 11 unordered pieces.    34   1.2    5
AC110283|AC110283.4 Homo sapiens chromosome 11, clone RP11-350A7, complete sequence.    34   1.3    5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_106(AC116984|pid:none) Dictyostelium discoideum chromos...   162   4e-39
AE017344_321(AE017344|pid:none) Cryptococcus neoformans var. neo...    55   1e-06
(Q2KJD7) RecName: Full=Ubiquitin-like domain-containing CTD phos...    48   9e-05
(Q8BGR9) RecName: Full=Ubiquitin-like domain-containing CTD phos...    48   9e-05
AY893165_1(AY893165|pid:none) Synthetic construct Homo sapiens c...    48   9e-05
(Q28EX9) RecName: Full=Ubiquitin-like domain-containing CTD phos...    47   3e-04
EU961853_1(EU961853|pid:none) Zea mays clone 238650 ubiquitin-li...    46   3e-04
BC002236_1(BC002236|pid:none) Mus musculus ubiquitin-like domain...    44   0.002
(Q8W3M6) RecName: Full=Ubiquitin-like domain-containing CTD phos...    43   0.003
AE014297_3394(AE014297|pid:none) Drosophila melanogaster chromos...    43   0.003

 psg: 0.85  gvh: 0.45  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHE204 is nuc

>CHE204Z.Seq
NNNNNNNNNNATNNANTNNNNNTNNNTTNNCANAGTTGGGATTATTANNTNATCCNCGTT
TTANNATTTGTTTTGTAATGGATCNAACATTAATGTTTAAGGTAACAACCTATAGAACCA
TCAATGGTAAAGAGAGAACTAAAATTAAACATAATGTAAAAGCATTGGAAGTAATTTGGA
AACATCAACATTTAGGTAAATTCTTTAGTATGAAAAATACTTTACATGTTGATGATCTCT
CCAAAAACTTTGCAATGAATCCAAAGAATGGTGTACATG