AFF565
Library AF
(Link to library)
Clone ID AFF565
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14932-1
Original site URL
Representative seq. ID AFF565P
(Link to Original site)
Representative DNA sequence
>AFF565 (AFF565Q) /CSM/AF/AFF5-C/AFF565Q.Seq.d/
CTATTCATTCTTTTATTTATTTGTTTATTAAAAAAATAATAATAATAACAATTGGTGTGT
ATGATAATTACACATTATTAATTATTTAAATAAATAAATTTATTAAATAAAATGGAAATT
AAAGATATTATCATAAATAGTAATTTAATGTTACCACCACCAACAATTTTAACAATAAAT
AATAAAGATGATTATACATCATTTACTTTTAAAGGGAAATCTATATCGGTACCAAGGAAA
CAAAGAATAACAAAAAAAACAATTTATGCCTGTGATATAAATGGTACAATGTTTCAAACA
TATAATATGGATACAAACCGATTATTAATAATTAAAAAAATTTCACTTTTACAATTTAAA
AATCATTTACAAGGTAGAATGATGTTAAGAAATTGTCATTACCAAAGATTTTTTAATCAT
CATCCATTTGTATCTGGTTTTAAAGTTTCAAAAAGAAAATCATTAAATATTAAAACAAAA
AATCTAATTGAATCTCCAGTTGATGATGGTACTGATTTATATTTTGAATTTGACCAATCT
GATTTCACTTTATACCAAATGATTAGATCAGATAAAGCAGCTTCAAGAAXXXXXXXXXXT
CNACTAATGGTTTCGCTAAAAATTTTTTTTTAAACNTTCCNTTAAAATCAANACATGGTG
GAATTAAAAAAANAATTCCNAATGCNACTGAAGAANAAATTGAAATTTTAAAAGGAATGN
TATGTTGGAATCCAAAAAAAANATGGCCNATTGAAANAATTATTCAGCANCCNTATTTTC
AAAATTATTGTCATATTGAACNATATAAATGNGATAAAAAATTCNCNCNTGGTTCCCCAN
ATGTTTTTCATAGATTAAAAGCNAAAGNAATTAAAAAAATAATTGAAGATGAATTTGTTA
CCCNACCNTAAAAAAAAAATATATATTTATTATAAAAAATAAATA
sequence update 2001. 6. 2
Translated Amino Acid sequence
lfillficllkk****qlvcmiithy*lfk*INLLNKMEIKDIIINSNLMLPPPTILTIN
NKDDYTSFTFKGKSISVPRKQRITKKTIYACDINGTMFQTYNMDTNRLLIIKKISLLQFK
NHLQGRMMLRNCHYQRFFNHHPFVSGFKVSKRKSLNIKTKNLIESPVDDGTDLYFEFDQS
DFTLYQMIRSDKAASR---

---STNGFAKNFFLNXPLKSXHGGIKKXIPNATEEXIEILKGMXCWNPKKXWPIEXIIQX
PYFQNYCHIEXYKXDKKFXXGSPXVFHRLKAKXIKKIIEDEFVTXP*kkniyll*kin


Translated Amino Acid sequence (All Frames)
Frame A:
lfillficllkk****qlvcmiithy*lfk*INLLNKMEIKDIIINSNLMLPPPTILTIN
NKDDYTSFTFKGKSISVPRKQRITKKTIYACDINGTMFQTYNMDTNRLLIIKKISLLQFK
NHLQGRMMLRNCHYQRFFNHHPFVSGFKVSKRKSLNIKTKNLIESPVDDGTDLYFEFDQS
DFTLYQMIRSDKAASR---

---STNGFAKNFFLNXPLKSXHGGIKKXIPNATEEXIEILKGMXCWNPKKXWPIEXIIQX
PYFQNYCHIEXYKXDKKFXXGSPXVFHRLKAKXIKKIIEDEFVTXP*kkniyll*kin

Frame B:
ysffylfvy*knnnnnnwcv**lhiinylnk*iy*ikwklkils*ivi*cyhhqqf*q*i
ikmiihhlllkgnlyryqgnke*qkkqfmpvi*mvqcfkhiiwiqtdy**lkkfhfynlk
iiykve*c*eivitkdfliiihlylvlkfqkenh*ilkqki*lnlqlmmvliyilnltnl
islytk*ldqikqlqe---

---xlmvslkiff*tfx*nqxmvelkkxfxmxlkxklkf*kexyvgiqkkxgxlkxlfsx
xifkiivilnxinxiknsxxvpxmffid*kxkxlkk*lkmnllpxxkkkiyiyykk*i

Frame C:
ihsfiylfikkiiiitigvydnytllii*inkfik*ngn*ryyhk**fnvtttnnfnnk*
*r*lyiiyf*reiyigtketknnkknnlcl*ykwynvsni*ygykpiinn*knftfti*k
sftr*ndvkklslpkif*sssiciwf*sfkkkiiky*nkksn*iss**wy*fif*i*pi*
fhfipnd*ir*ssfk---

---x*wfr*kfffkxsxkixtwwn*kxnsxcx*rxn*nfkrnxmleskkxmax*xnysax
xfskllsy*ti*mx*kixxwfpxcfs*iksxxn*knn*r*icyptxkkkyifiiknk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFJ875 (SFJ875Q) /CSM/SF/SFJ8-D/SFJ875Q.Seq.d/ 557 e-157
SFF869 (SFF869Q) /CSM/SF/SFF8-C/SFF869Q.Seq.d/ 557 e-157
SFD732 (SFD732Q) /CSM/SF/SFD7-B/SFD732Q.Seq.d/ 557 e-157
SFC878 (SFC878Q) /CSM/SF/SFC8-D/SFC878Q.Seq.d/ 557 e-157
AHK848 (AHK848Q) /CSM/AH/AHK8-B/AHK848Q.Seq.d/ 557 e-157
AFH241 (AFH241Q) /CSM/AF/AFH2-B/AFH241Q.Seq.d/ 557 e-157
AFF565 (AFF565Q) /CSM/AF/AFF5-C/AFF565Q.Seq.d/ 557 e-157
AFD215 (AFD215Q) /CSM/AF/AFD2-A/AFD215Q.Seq.d/ 557 e-157
AFA615 (AFA615Q) /CSM/AF/AFA6-A/AFA615Q.Seq.d/ 557 e-157
CHB375 (CHB375Q) /CSM/CH/CHB3-D/CHB375Q.Seq.d/ 551 e-156

own update 2002.10.28
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 38 1e-11 19
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence. 40 1e-10 15
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 42 2e-10 18
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence. 36 7e-10 17
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 38 8e-10 13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 42 9e-10 22
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 36 3e-09 16
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 36 6e-09 20
AL035475|AL035475.7 Plasmodium falciparum MAL4P2. 36 8e-09 17
AE014840|AE014840.1 Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence. 36 1e-08 16
dna update 2004. 4.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54US6) RecName: Full=Probable inactive serine/threonine-protei... 324 2e-87
(Q54V83) RecName: Full=Probable serine/threonine-protein kinase ... 105 2e-21
(P42525) RecName: Full=Extracellular signal-regulated kinase 1; ... 44 0.006
U11077_1(U11077|pid:none) Dictyostelium discoideum extracellular... 43 0.017
EU931241_1(EU931241|pid:none) Rheum australe mitogen activated p... 40 0.11
AK074892_1(AK074892|pid:none) Homo sapiens cDNA FLJ90411 fis, cl... 40 0.14
AF225919_1(AF225919|pid:none) Homo sapiens intestinal cell kinas... 40 0.14
EF185418_1(EF185418|pid:none) Citrus sinensis mitogen-activated ... 39 0.19
AK154185_1(AK154185|pid:none) Mus musculus NOD-derived CD11c +ve... 39 0.24
(Q9JKV2) RecName: Full=Serine/threonine-protein kinase ICK; ... 39 0.24
protein update 2009. 4.20
PSORT

psg: 0.89 gvh: 0.41 alm: 0.40 top: 0.33 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
40.0 %: nuclear
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for AFF565 is cyt

5' end seq. ID AFF565F
5' end seq.
>AFF565F.Seq
CTATTCATTCTTTTATTTATTTGTTTATTAAAAAAATAATAATAATAACAATTGGTGTGT
ATGATAATTACACATTATTAATTATTTAAATAAATAAATTTATTAAATAAAATGGAAATT
AAAGATATTATCATAAATAGTAATTTAATGTTACCACCACCAACAATTTTAACAATAAAT
AATAAAGATGATTATACATCATTTACTTTTAAAGGGAAATCTATATCGGTACCAAGGAAA
CAAAGAATAACAAAAAAAACAATTTATGCCTGTGATATAAATGGTACAATGTTTCAAACA
TATAATATGGATACAAACCGATTATTAATAATTAAAAAAATTTCACTTTTACAATTTAAA
AATCATTTACAAGGTAGAATGATGTTAAGAAATTGTCATTACCAAAGATTTTTTAATCAT
CATCCATTTGTATCTGGTTTTAAAGTTTCAAAAAGAAAATCATTAAATATTAAAACAAAA
AATCTAATTGAATCTCCAGTTGATGATGGTACTGATTTATATTTTGAATTTGACCAATCT
GATTTCACTTTATACCAAATGATTAGATCAGATAAAGCAGCTTCAAGAA----------
Length of 5' end seq. 589
3' end seq. ID AFF565Z
3' end seq.
>AFF565Z.Seq
----------TCNACTAATGGTTTCGCTAAAAATTTTTTTTTAAACNTTCCNTTAAAATC
AANACATGGTGGAATTAAAAAAANAATTCCNAATGCNACTGAAGAANAAATTGAAATTTT
AAAAGGAATGNTATGTTGGAATCCAAAAAAAANATGGCCNATTGAAANAATTATTCAGCA
NCCNTATTTTCAAAATTATTGTCATATTGAACNATATAAATGNGATAAAAAATTCNCNCN
TGGTTCCCCANATGTTTTTCATAGATTAAAAGCNAAAGNAATTAAAAAAATAATTGAAGA
TGAATTTGTTACCCNACCNTAAAAAAAAAATATATATTTATTATAAAAAATAAATA
Length of 3' end seq. 346
Connected seq. ID AFF565P
Connected seq.
>AFF565P.Seq
CTATTCATTCTTTTATTTATTTGTTTATTAAAAAAATAATAATAATAACAATTGGTGTGT
ATGATAATTACACATTATTAATTATTTAAATAAATAAATTTATTAAATAAAATGGAAATT
AAAGATATTATCATAAATAGTAATTTAATGTTACCACCACCAACAATTTTAACAATAAAT
AATAAAGATGATTATACATCATTTACTTTTAAAGGGAAATCTATATCGGTACCAAGGAAA
CAAAGAATAACAAAAAAAACAATTTATGCCTGTGATATAAATGGTACAATGTTTCAAACA
TATAATATGGATACAAACCGATTATTAATAATTAAAAAAATTTCACTTTTACAATTTAAA
AATCATTTACAAGGTAGAATGATGTTAAGAAATTGTCATTACCAAAGATTTTTTAATCAT
CATCCATTTGTATCTGGTTTTAAAGTTTCAAAAAGAAAATCATTAAATATTAAAACAAAA
AATCTAATTGAATCTCCAGTTGATGATGGTACTGATTTATATTTTGAATTTGACCAATCT
GATTTCACTTTATACCAAATGATTAGATCAGATAAAGCAGCTTCAAGAA----------T
CNACTAATGGTTTCGCTAAAAATTTTTTTTTAAACNTTCCNTTAAAATCAANACATGGTG
GAATTAAAAAAANAATTCCNAATGCNACTGAAGAANAAATTGAAATTTTAAAAGGAATGN
TATGTTGGAATCCAAAAAAAANATGGCCNATTGAAANAATTATTCAGCANCCNTATTTTC
AAAATTATTGTCATATTGAACNATATAAATGNGATAAAAAATTCNCNCNTGGTTCCCCAN
ATGTTTTTCATAGATTAAAAGCNAAAGNAATTAAAAAAATAATTGAAGATGAATTTGTTA
CCCNACCNTAAAAAAAAAATATATATTTATTATAAAAAATAAATA
Length of connected seq. 935
Full length Seq ID -
Full length Seq. -
Length of full length seq. -