CHE187
Library CH
(Link to library)
Clone ID CHE187
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16363-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHE187 (CHE187Q) /CSM/CH/CHE1-D/CHE187Q.Seq.d/
XXXXXXXXXXATGGTGATTGGGATNCAAANTTATATTGGGNAATGCATGANTTAGGTTTT
TCACTCATCGCTGTTGATTGGACAATCTCTCCANTCACTCANCCAGGTACTTA
sequence update 2002. 9.10
Translated Amino Acid sequence
---GDWDXXLYWXMHXLGFSLIAVDWTISPXTXPGT


Translated Amino Acid sequence (All Frames)
Frame A:
---w*lgxkxilgna*xrffthrc*ldnlsxhsxryl


Frame B:
---GDWDXXLYWXMHXLGFSLIAVDWTISPXTXPGT


Frame C:
---vigxqxyigxcmx*vfhsslligqslxslxqvl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHE187 (CHE187Q) /CSM/CH/CHE1-D/CHE187Q.Seq.d/ 168 1e-41
SHD874 (SHD874Q) /CSM/SH/SHD8-D/SHD874Q.Seq.d/ 153 6e-37
VSK378 (VSK378Q) /CSM/VS/VSK3-D/VSK378Q.Seq.d/ 153 6e-37
VSD672 (VSD672Q) /CSM/VS/VSD6-C/VSD672Q.Seq.d/ 153 6e-37
VSA546 (VSA546Q) /CSM/VS/VSA5-B/VSA546Q.Seq.d/ 153 6e-37
VHQ375 (VHQ375Q) /CSM/VH/VHQ3-D/VHQ375Q.Seq.d/ 153 6e-37
VHQ366 (VHQ366Q) /CSM/VH/VHQ3-C/VHQ366Q.Seq.d/ 153 6e-37
VHQ230 (VHQ230Q) /CSM/VH/VHQ2-B/VHQ230Q.Seq.d/ 153 6e-37
VHP740 (VHP740Q) /CSM/VH/VHP7-B/VHP740Q.Seq.d/ 153 6e-37
VHP630 (VHP630Q) /CSM/VH/VHP6-B/VHP630Q.Seq.d/ 153 6e-37

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB121061|AB121061.1 Dictyostelium discoideum dcd mRNA for ceramidase, complete cds. 153 5e-34 1
U82513|U82513.1 Dictyostelium discoideum random slug cDNA25 protein (rsc25) mRNA, partial cds. 153 5e-34 1
BU674593|BU674593.1 UI-CF-DU0-aac-b-05-0-UI.s1 UI-CF-DU0 Homo sapiens cDNA clone UI-CF-DU0-aac-b-05-0-UI 3', mRNA sequence. 30 4.8 2
BU676785|BU676785.1 UI-CF-DU1-aam-o-08-0-UI.s1 UI-CF-DU1 Homo sapiens cDNA clone UI-CF-DU1-aam-o-08-0-UI 3', mRNA sequence. 30 5.0 2
BU685437|BU685437.1 UI-CF-DU1-aaw-j-05-0-UI.s2 UI-CF-DU1 Homo sapiens cDNA clone UI-CF-DU1-aaw-j-05-0-UI 3', mRNA sequence. 30 5.2 2

dna update 2004. 2. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U82513_1(U82513|pid:none) Dictyostelium discoideum random slug c... 62 5e-09
(Q55G11) RecName: Full=Neutral ceramidase B; Short=N-CD... 52 5e-06
CP000744_4623(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 33 3.9

protein update 2009. 1. 1
PSORT

psg: 0.75 gvh: 0.52 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.12 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for CHE187 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHE187Z
3' end seq.
>CHE187Z.Seq
NNNNNNNNNNATGGTGATTGGGATNCAAANTTATATTGGGNAATGCATGANTTAGGTTTT
TCACTCATCGCTGTTGATTGGACAATCTCTCCANTCACTCANCCAGGTACTTA
Length of 3' end seq. 113
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -