CHE174
Library CH
(Link to library)
Clone ID CHE174
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15303-1|Contig-U15685-1
Original site URL
Representative seq. ID CHE174P
(Link to Original site)
Representative DNA sequence
>CHE174 (CHE174Q) /CSM/CH/CHE1-D/CHE174Q.Seq.d/
TGTTGGCCTACTGGTTAGGTTTCATCACTGGTGTTATGAATACAGACAAGATGCCACAAT
TCCAACGTTCACTTTGGAGAACCACCCGTGGTAACAATTATGTCAAGGATGCACGTATCG
AAGAGGAAATCATTGATCCACAAACTGGCGAGGAAACTGCCAAGACTGTATTCATTGTTT
TCTTCCAAGGTGAGAGATTACAACAAAAAATTAAAAAGATTTGTGAATCATTTGGTGCCA
ACATCTACGATTGTCCAGATAATTCATTCGAACGTTCAAATCTTTTACAAAAAGTTACTG
TTCGTATCACTGATCTCTATGAAGTTTTACAACGTTCAAAGGATCACAAGAGACAAACTT
TAGCAGGTATCGTACCAAGACTTTACTCATGGAAGAAGAAGGTTTTACTCGAGAAATCAA
TCTATCACACTATGAATCTTTTCGATTATGATGTTGGTAGAAAATGTTTAATCGCCAAAG
GTTGGAXXXXXXXXXXGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTT
CATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGA
ACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGT
CTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGC
CTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTG
GGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTT
TGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTT
CTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGG
TGTTAGATTCATTCCATACAGTGCCACTCGTATTCTTTCTGGTTCTGAAG
sequence update 2002.10.25
Translated Amino Acid sequence
LAYWLGFITGVMNTDKMPQFQRSLWRTTRGNNYVKDARIEEEIIDPQTGEETAKTVFIVF
FQGERLQQKIKKICESFGANIYDCPDNSFERSNLLQKVTVRITDLYEVLQRSKDHKRQTL
AGIVPRLYSWKKKVLLEKSIYHTMNLFDYDVGRKCLIAKGW---

---ALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFV
HQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGA
WLGASVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYSATRILSGSE


Translated Amino Acid sequence (All Frames)
Frame A:
cwptg*vsslvl*iqtrchnsnvhfgeppvvtimsrmhvskrkslihklarklprlyslf
sskvrdynkklkrfvnhlvptstivqiihsnvqifykkllfvslismkfynvqritrdkl
*qvsyqdfthgrrrfysrnqsitl*ifsimmlvenv*spkvg---

---ALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFV
HQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGA
WLGASVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYSATRILSGSE

Frame B:
vgllvrfhhwcyeyrqdatiptftlenhpw*qlcqgctyrrgnh*stnwrgncqdcihcf
lpr*eittkn*kdl*iiwcqhlrlsr*firtfksftksycsyh*sl*sfttfkgsqetnf
sryrtktllmeeegftreinlshyesfrl*cw*kmfnrqrl---

---lsfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlvitvknlkwvkslf
iksfipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksnvvihswlslvlvl
g*vplllyfylwnpfllsctlldfig*nskinsilvmvldsfhtvplvfflvlk

Frame C:
LAYWLGFITGVMNTDKMPQFQRSLWRTTRGNNYVKDARIEEEIIDPQTGEETAKTVFIVF
FQGERLQQKIKKICESFGANIYDCPDNSFERSNLLQKVTVRITDLYEVLQRSKDHKRQTL
AGIVPRLYSWKKKVLLEKSIYHTMNLFDYDVGRKCLIAKGW---

---shfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhwssr*ri*ng*slcs
sshsyhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrtw*silgfrwfwcl
vrclccctftygipfcflars*tslgripk*ilyw*wc*ihsiqchsysfwf*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHE174 (CHE174Q) /CSM/CH/CHE1-D/CHE174Q.Seq.d/ 1513 0.0
SHL126 (SHL126Q) /CSM/SH/SHL1-B/SHL126Q.Seq.d/ 1019 0.0
AHK216 (AHK216Q) /CSM/AH/AHK2-A/AHK216Q.Seq.d/ 1019 0.0
VHP711 (VHP711Q) /CSM/VH/VHP7-A/VHP711Q.Seq.d/ 1013 0.0
CHF322 (CHF322Q) /CSM/CH/CHF3-A/CHF322Q.Seq.d/ 1013 0.0
AHO215 (AHO215Q) /CSM/AH/AHO2-A/AHO215Q.Seq.d/ 1013 0.0
AHN828 (AHN828Q) /CSM/AH/AHN8-B/AHN828Q.Seq.d/ 1011 0.0
CHH295 (CHH295Q) /CSM/CH/CHH2-D/CHH295Q.Seq.d/ 1009 0.0
AHA425 (AHA425Q) /CSM/AH/AHA4-B/AHA425Q.Seq.d/ 1007 0.0
SHE135 (SHE135Q) /CSM/SH/SHE1-B/SHE135Q.Seq.d/ 1005 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds. 1001 0.0 3
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence. 72 2e-13 2
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence. 80 8e-11 1
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence. 80 8e-11 1
AJ438978|AJ438978.1 Mesembryanthemum crystallinum mRNA for putative vacuolar ATPase subunit 100 kDa subunit (vpha-a gene). 46 1e-10 4
CV164410|CV164410.1 rsmsxl_003361.y1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence. 54 8e-09 3
CV172465|CV172465.1 rsmsxlre_008717.z1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence. 54 1e-08 3
CO121599|CO121599.1 GR__Eb02N16.r GR__Eb Gossypium raimondii cDNA clone GR__Eb02N16 3', mRNA sequence. 72 2e-08 1
CO071051|CO071051.1 GR__Ea28H19.r GR__Ea Gossypium raimondii cDNA clone GR__Ea28H19 3', mRNA sequence. 72 2e-08 1
CO099107|CO099107.1 GR__Ea23M21.f GR__Ea Gossypium raimondii cDNA clone GR__Ea23M21 5', mRNA sequence. 72 2e-08 1
dna update 2004. 9.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ... 340 3e-92
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot... 340 3e-92
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ... 191 4e-47
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso... 186 1e-45
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo... 186 1e-45
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo... 186 1e-45
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo... 185 2e-45
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c... 184 3e-45
AJ438978_1(AJ438978|pid:none) Mesembryanthemum crystallinum mRNA... 178 2e-43
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 177 4e-43
protein update 2009. 3.30
PSORT

psg: 0.95 gvh: 0.42 alm: 0.27 top: 0.63 tms: 0.20 mit: 0.27 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

32.0 %: endoplasmic reticulum
16.0 %: vacuolar
16.0 %: plasma membrane
12.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for CHE174 is end

5' end seq. ID CHE174F
5' end seq.
>CHE174F.Seq
TGTTGGCCTACTGGTTAGGTTTCATCACTGGTGTTATGAATACAGACAAGATGCCACAAT
TCCAACGTTCACTTTGGAGAACCACCCGTGGTAACAATTATGTCAAGGATGCACGTATCG
AAGAGGAAATCATTGATCCACAAACTGGCGAGGAAACTGCCAAGACTGTATTCATTGTTT
TCTTCCAAGGTGAGAGATTACAACAAAAAATTAAAAAGATTTGTGAATCATTTGGTGCCA
ACATCTACGATTGTCCAGATAATTCATTCGAACGTTCAAATCTTTTACAAAAAGTTACTG
TTCGTATCACTGATCTCTATGAAGTTTTACAACGTTCAAAGGATCACAAGAGACAAACTT
TAGCAGGTATCGTACCAAGACTTTACTCATGGAAGAAGAAGGTTTTACTCGAGAAATCAA
TCTATCACACTATGAATCTTTTCGATTATGATGTTGGTAGAAAATGTTTAATCGCCAAAG
GTTGGANNNNNNNNNN
Length of 5' end seq. 496
3' end seq. ID CHE174Z
3' end seq.
>CHE174Z.Seq
NNNNNNNNNNGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAA
GAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGA
TGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGT
TCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTA
TCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACG
TATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGC
TTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCA
CGCTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGTGTTAG
ATTCATTCCATACAGTGCCACTCGTATTCTTTCTGGTTCTGAAG
Length of 3' end seq. 524
Connected seq. ID CHE174P
Connected seq.
>CHE174P.Seq
TGTTGGCCTACTGGTTAGGTTTCATCACTGGTGTTATGAATACAGACAAGATGCCACAAT
TCCAACGTTCACTTTGGAGAACCACCCGTGGTAACAATTATGTCAAGGATGCACGTATCG
AAGAGGAAATCATTGATCCACAAACTGGCGAGGAAACTGCCAAGACTGTATTCATTGTTT
TCTTCCAAGGTGAGAGATTACAACAAAAAATTAAAAAGATTTGTGAATCATTTGGTGCCA
ACATCTACGATTGTCCAGATAATTCATTCGAACGTTCAAATCTTTTACAAAAAGTTACTG
TTCGTATCACTGATCTCTATGAAGTTTTACAACGTTCAAAGGATCACAAGAGACAAACTT
TAGCAGGTATCGTACCAAGACTTTACTCATGGAAGAAGAAGGTTTTACTCGAGAAATCAA
TCTATCACACTATGAATCTTTTCGATTATGATGTTGGTAGAAAATGTTTAATCGCCAAAG
GTTGGA----------GCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTT
CATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGA
ACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGT
CTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGC
CTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTG
GGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTT
TGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTT
CTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGG
TGTTAGATTCATTCCATACAGTGCCACTCGTATTCTTTCTGGTTCTGAAG
Length of connected seq. 1000
Full length Seq ID -
Full length Seq. -
Length of full length seq. -