>CHE157 (CHE157Q) /CSM/CH/CHE1-C/CHE157Q.Seq.d/
ATATTTCTTTCTCTCTCTCAACACATTAAAATTTTTTTAAACACGTTAAATAAAAAAAAT
GATTAAAAAATTAATATTAGATCCAAAGAATGTATCAATAATTAAAAATGGTATTAGAAA
TTATTCAAAATCAAAATCATTTATTCAACCAATTACAACATTATCAGAAGAGGAAACTTT
ATTAAAAGAAACTGTTGCAAATTTTGCAAATGAAAAAGTTAGACCATTAGTAAAGGTTAT
GGATGAAACATCAGAATTAAATAAAGGATTATTAAAAGATTTATTCGATATGAATTTAAT
GGGTATTGATATTTCAGATAGTTATGGTGGAGCCAATATGAATTTTATGGGATCAATCAT
TGCTATTGAAGAATTAGCAAAAGTTGATCCAGCCATTAGTGTAATAGTAGATGTACAAAA
TACACTCGTTAACAATTGTATCAATCGTTATGGTAGCATACAACAAAGAGAAAAGTATTT
ATCAATGTTGGCAACCAACACAGTTGGTAGTTTTTGTCTAAGTGAATCAGGCTCAGGTTC
TGATGCATTCGCATTGGCAACTCGTGCAGTCAGACAATCAGATGGCACATTCGTTTTAAA
TGGCACTAAACAATGGATCACAAATGCCAAAXXXXXXXXXXCACTAANCAATGGATCACA
AATGCCAAAGAGGCAGGTGTTTTCATCGTTATGGCAAATGTCGACCCATCACAGGGTTAC
AAAGGTATCACTGCCTTCATTGTTGAATCTAATAATCCAGGTTTAAGAATTGGTAAGAAG
GAGGATAAATTAGGTATTAGAGCAAGCAGTACTTGTGAAGTTATTTTGGACAATTGTGTG
GTAAAACCAACTGATATCCTCGGTGAATTGGGTAGAGGTTATAAAATTGCTATCGAGGGT
TTAAATGAAGGTCGTATTGGTATCGCTGCTCAAATGTTGGGTTTAGCTCAAGGTGTATTC
GATTCAACTATTCCTTACTTGATGGAACGTAAACAATTTGGTAAACCAATCGCTACTTTC
CAAGGTATGCAATTCACTTATGCAGATTTAGCTGTAGATATTGAAGCTGGTAGACTTTTA
ACTTATAATGCAGCTCGTATTAAAGAAGCTGGTCTACCATTTGTTTTCCAAGCTTCAATG
GCAAAACTTCATTGTTCACGTGTCGCTGAAAAAGCAGCTTCTGCTTGTATTTCAATGTTG
GGTGGTGTTGGTTTCACTAAAGAATTCCCTGCTGAAAAATTCTTTAGAGATTCAAAAGTT
GGTCAAATTTATGAAGGTACTTCAAATATTCAATTACAAACAATTGCAAAAGNAAANTGT
TAAAAATNTTAATAAATAAAATAAAAA

yfflslntlkff*tr*IKKMIKKLILDPKNVSIIKNGIRNYSKSKSFIQPITTLSEEETL
LKETVANFANEKVRPLVKVMDETSELNKGLLKDLFDMNLMGIDISDSYGGANMNFMGSII
AIEELAKVDPAISVIVDVQNTLVNNCINRYGSIQQREKYLSMLATNTVGSFCLSESGSGS
DAFALATRAVRQSDGTFVLNGTKQWITNAK---

---TXQWITNAKEAGVFIVMANVDPSQGYKGITAFIVESNNPGLRIGKKEDKLGIRASST
CEVILDNCVVKPTDILGELGRGYKIAIEGLNEGRIGIAAQMLGLAQGVFDSTIPYLMERK
QFGKPIATFQGMQFTYADLAVDIEAGRLLTYNAARIKEAGLPFVFQASMAKLHCSRVAEK
AASACISMLGGVGFTKEFPAEKFFRDSKVGQIYEGTSNIQLQTIAKXXC*kx**ik*k

Frame A:
iflslsqhikiflntlnkknd*kinirskecinn*kwy*klfkikiiystnyniirrgnf
ikrncckfck*ks*tiskgyg*nirik*riikrfiryefngy*yfr*lwwsqyefyginh
cy*risks*ssh*cnsrctkytr*qlyqslw*httkrkvfinvgnqhsw*flsk*irlrf
*cirignscsqtirwhirfkwh*tmdhkcq---

---h*xmdhkcqrgrcfhrygkcrpitglqryhclhc*i**srfknw*egg*iry*skqy
l*syfgqlcgktn*ypr*ig*rl*ncyrgfk*rsywyrcsnvgfssrcirfnyslldgt*
tiw*tnryfpryaihlcrfscry*sw*tfnl*cssy*rswsticfpsfngktslftcr*k
ssfclyfnvgwcwfh*ripc*kil*rfkswsnl*ryfkysitnnckxkxlkxlinkik

Frame B:
yfflslntlkff*tr*IKKMIKKLILDPKNVSIIKNGIRNYSKSKSFIQPITTLSEEETL
LKETVANFANEKVRPLVKVMDETSELNKGLLKDLFDMNLMGIDISDSYGGANMNFMGSII
AIEELAKVDPAISVIVDVQNTLVNNCINRYGSIQQREKYLSMLATNTVGSFCLSESGSGS
DAFALATRAVRQSDGTFVLNGTKQWITNAK---

---TXQWITNAKEAGVFIVMANVDPSQGYKGITAFIVESNNPGLRIGKKEDKLGIRASST
CEVILDNCVVKPTDILGELGRGYKIAIEGLNEGRIGIAAQMLGLAQGVFDSTIPYLMERK
QFGKPIATFQGMQFTYADLAVDIEAGRLLTYNAARIKEAGLPFVFQASMAKLHCSRVAEK
AASACISMLGGVGFTKEFPAEKFFRDSKVGQIYEGTSNIQLQTIAKXXC*kx**ik*k

Frame C:
isfslsth*nffkhvk*kk*lkn*y*iqrmyq*lkmvleiiqnqnhlfnqlqhyqkrkly
*kkllqilqmkkldh**rlwmkhqn*ikdy*kiysi*i*wvlifqivmvepi*ilwdqsl
llkn*qkliqplv***mykihsltivsivmvaynkeksiyqcwqptqlvvfv*vnqaqvl
mhshwqlvqsdnqmahsf*malnngsqmp---

---lxngsqmpkrqvfsslwqmsthhrvtkvslpsllnliiqv*elvrrrin*vleqavl
vklfwtivw*nqlissvnwvevikllsrv*mkvvlvsllkcwv*lkvysiqlflt*wnvn
nlvnqsllskvcnslmqi*l*ilklvdf*limqlvlkklvyhlfsklqwqnfivhvslkk
qlllvfqcwvvlvslknsllknsleiqklvkfmkvlqifnykqlqkxxvknxnk*nk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE157 (CHE157Q) /CSM/CH/CHE1-C/CHE157Q.Seq.d/                       2476   0.0
SLG556 (SLG556Q) /CSM/SL/SLG5-C/SLG556Q.Seq.d/                       1312   0.0
SFC345 (SFC345Q) /CSM/SF/SFC3-B/SFC345Q.Seq.d/                       1312   0.0
AFG654 (AFG654Q) /CSM/AF/AFG6-C/AFG654Q.Seq.d/                       1312   0.0
AFF278 (AFF278Q) /CSM/AF/AFF2-D/AFF278Q.Seq.d/                       1312   0.0
AFD462 (AFD462Q) /CSM/AF/AFD4-C/AFD462Q.Seq.d/                       1312   0.0
AFA590 (AFA590Q) /CSM/AF/AFA5-D/AFA590Q.Seq.d/                       1312   0.0
AFK518 (AFK518Q) /CSM/AF/AFK5-A/AFK518Q.Seq.d/                       1308   0.0
SFF747 (SFF747Q) /CSM/SF/SFF7-B/SFF747Q.Seq.d/                       1306   0.0
VFD330 (VFD330Q) /CSM/VF/VFD3-B/VFD330Q.Seq.d/                       1302   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AU114157|AU114157.1 Caenorhabditis elegans cDNA clone:yk715h10 : 3' end, single read.    54   6e-10  2
BJ780526|BJ780526.1 Caenorhabditis elegans cDNA clone:yk1424d10 : 3' end.    48   3e-08  2
D72651|D72651.1 C.elegans cDNA clone yk106c6 : 3' end, single read.    48   3e-08  2
CO004167|CO004167.1 EST792502 Coccidioides posadasii spherule cDNA library, 0.4 to 2.3 kb Coccidioides posadasii cDNA clone CIEAH80 5' end, mRNA sequence.    70   1e-07  1
CO003886|CO003886.1 EST792221 Coccidioides posadasii spherule cDNA library, 0.4 to 2.3 kb Coccidioides posadasii cDNA clone CIEAG23 3' end, mRNA sequence.    70   1e-07  1
CO011999|CO011999.1 EST800334 Coccidioides posadasii spherule cDNA library, 0.4 to 2.3 kb Coccidioides posadasii cDNA clone CIEBQ42 3' end, mRNA sequence.    70   1e-07  1
CO004166|CO004166.1 EST792501 Coccidioides posadasii spherule cDNA library, 0.4 to 2.3 kb Coccidioides posadasii cDNA clone CIEAH80 3' end, mRNA sequence.    70   1e-07  1
CO006553|CO006553.1 EST794888 Coccidioides posadasii spherule cDNA library, 0.4 to 2.3 kb Coccidioides posadasii cDNA clone CIEAV43 3' end, mRNA sequence.    70   1e-07  1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   1e-07  19
AC006625|AC006625.1 Caenorhabditis elegans cosmid C55B7, complete sequence.    46   1e-07  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RR5) RecName: Full=Probable short/branched chain specific ac...   438   0.0
CP000473_5244(CP000473|pid:none) Solibacter usitatus Ellin6076, ...   293   e-115
CP000360_1129(CP000360|pid:none) Acidobacteria bacterium Ellin34...   293   e-115
AB169822_1(AB169822|pid:none) Macaca fascicularis brain cDNA, cl...   282   e-114
AB170478_1(AB170478|pid:none) Macaca fascicularis brain cDNA clo...   282   e-114
DQ864937_1(DQ864937|pid:none) Pfiesteria piscicida clone ppi-5p-...   291   e-114
AL831821_1(AL831821|pid:none) Homo sapiens mRNA; cDNA DKFZp451K2...   283   e-114
AF039038_2(AF039038|pid:none) Caenorhabditis elegans cosmid K06A...   287   e-113
CR762047_1(CR762047|pid:none) Xenopus tropicalis finished cDNA, ...   276   e-112
AJ720214_1(AJ720214|pid:none) Gallus gallus mRNA for hypothetica...   279   e-112

 psg: 0.62  gvh: 0.24  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 32.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for CHE157 is mit

>CHE157F.Seq
ATATTTCTTTCTCTCTCTCAACACATTAAAATTTTTTTAAACACGTTAAATAAAAAAAAT
GATTAAAAAATTAATATTAGATCCAAAGAATGTATCAATAATTAAAAATGGTATTAGAAA
TTATTCAAAATCAAAATCATTTATTCAACCAATTACAACATTATCAGAAGAGGAAACTTT
ATTAAAAGAAACTGTTGCAAATTTTGCAAATGAAAAAGTTAGACCATTAGTAAAGGTTAT
GGATGAAACATCAGAATTAAATAAAGGATTATTAAAAGATTTATTCGATATGAATTTAAT
GGGTATTGATATTTCAGATAGTTATGGTGGAGCCAATATGAATTTTATGGGATCAATCAT
TGCTATTGAAGAATTAGCAAAAGTTGATCCAGCCATTAGTGTAATAGTAGATGTACAAAA
TACACTCGTTAACAATTGTATCAATCGTTATGGTAGCATACAACAAAGAGAAAAGTATTT
ATCAATGTTGGCAACCAACACAGTTGGTAGTTTTTGTCTAAGTGAATCAGGCTCAGGTTC
TGATGCATTCGCATTGGCAACTCGTGCAGTCAGACAATCAGATGGCACATTCGTTTTAAA
TGGCACTAAACAATGGATCACAAATGCCAAANNNNNNNNNN

>CHE157Z.Seq
NNNNNNNNNNCACTAANCAATGGATCACAAATGCCAAAGAGGCAGGTGTTTTCATCGTTA
TGGCAAATGTCGACCCATCACAGGGTTACAAAGGTATCACTGCCTTCATTGTTGAATCTA
ATAATCCAGGTTTAAGAATTGGTAAGAAGGAGGATAAATTAGGTATTAGAGCAAGCAGTA
CTTGTGAAGTTATTTTGGACAATTGTGTGGTAAAACCAACTGATATCCTCGGTGAATTGG
GTAGAGGTTATAAAATTGCTATCGAGGGTTTAAATGAAGGTCGTATTGGTATCGCTGCTC
AAATGTTGGGTTTAGCTCAAGGTGTATTCGATTCAACTATTCCTTACTTGATGGAACGTA
AACAATTTGGTAAACCAATCGCTACTTTCCAAGGTATGCAATTCACTTATGCAGATTTAG
CTGTAGATATTGAAGCTGGTAGACTTTTAACTTATAATGCAGCTCGTATTAAAGAAGCTG
GTCTACCATTTGTTTTCCAAGCTTCAATGGCAAAACTTCATTGTTCACGTGTCGCTGAAA
AAGCAGCTTCTGCTTGTATTTCAATGTTGGGTGGTGTTGGTTTCACTAAAGAATTCCCTG
CTGAAAAATTCTTTAGAGATTCAAAAGTTGGTCAAATTTATGAAGGTACTTCAAATATTC
AATTACAAACAATTGCAAAAGNAAANTGTTAAAAATNTTAATAAATAAAATAAAAA

>CHE157P.Seq
ATATTTCTTTCTCTCTCTCAACACATTAAAATTTTTTTAAACACGTTAAATAAAAAAAAT
GATTAAAAAATTAATATTAGATCCAAAGAATGTATCAATAATTAAAAATGGTATTAGAAA
TTATTCAAAATCAAAATCATTTATTCAACCAATTACAACATTATCAGAAGAGGAAACTTT
ATTAAAAGAAACTGTTGCAAATTTTGCAAATGAAAAAGTTAGACCATTAGTAAAGGTTAT
GGATGAAACATCAGAATTAAATAAAGGATTATTAAAAGATTTATTCGATATGAATTTAAT
GGGTATTGATATTTCAGATAGTTATGGTGGAGCCAATATGAATTTTATGGGATCAATCAT
TGCTATTGAAGAATTAGCAAAAGTTGATCCAGCCATTAGTGTAATAGTAGATGTACAAAA
TACACTCGTTAACAATTGTATCAATCGTTATGGTAGCATACAACAAAGAGAAAAGTATTT
ATCAATGTTGGCAACCAACACAGTTGGTAGTTTTTGTCTAAGTGAATCAGGCTCAGGTTC
TGATGCATTCGCATTGGCAACTCGTGCAGTCAGACAATCAGATGGCACATTCGTTTTAAA
TGGCACTAAACAATGGATCACAAATGCCAAA----------CACTAANCAATGGATCACA
AATGCCAAAGAGGCAGGTGTTTTCATCGTTATGGCAAATGTCGACCCATCACAGGGTTAC
AAAGGTATCACTGCCTTCATTGTTGAATCTAATAATCCAGGTTTAAGAATTGGTAAGAAG
GAGGATAAATTAGGTATTAGAGCAAGCAGTACTTGTGAAGTTATTTTGGACAATTGTGTG
GTAAAACCAACTGATATCCTCGGTGAATTGGGTAGAGGTTATAAAATTGCTATCGAGGGT
TTAAATGAAGGTCGTATTGGTATCGCTGCTCAAATGTTGGGTTTAGCTCAAGGTGTATTC
GATTCAACTATTCCTTACTTGATGGAACGTAAACAATTTGGTAAACCAATCGCTACTTTC
CAAGGTATGCAATTCACTTATGCAGATTTAGCTGTAGATATTGAAGCTGGTAGACTTTTA
ACTTATAATGCAGCTCGTATTAAAGAAGCTGGTCTACCATTTGTTTTCCAAGCTTCAATG
GCAAAACTTCATTGTTCACGTGTCGCTGAAAAAGCAGCTTCTGCTTGTATTTCAATGTTG
GGTGGTGTTGGTTTCACTAAAGAATTCCCTGCTGAAAAATTCTTTAGAGATTCAAAAGTT
GGTCAAATTTATGAAGGTACTTCAAATATTCAATTACAAACAATTGCAAAAGNAAANTGT
TAAAAATNTTAATAAATAAAATAAAAA