>CHE136 (CHE136Q) /CSM/CH/CHE1-B/CHE136Q.Seq.d/
TTGGCCTACTGGTTTTTTATTTTTATTTTCACAACTAATAACAGACTAAATTAATAAAGA
TAAAAATAAAAATAAACAAACCAAATTAAAAATATTAAATAAAATGGAATCTAACACAGG
ATTCTCAAGGNACAAGGTATTATTCCTCAATCATATCATTCATCAATTTTCTTTTCAATT
TCAAAAGGATCTGATAAGATTGGTGGATTATTAGAGTATTTAGAGATTATTAAAAAACAT
AATATCAACATTACAAGAATTGAATCAAGACCATCAAAAACCGAAAAAAAAGATTATGAT
TTCTTTTTAGATTTAGAATATCCAACAGAAAACAATAAAGAAGTTGAAAAGGTTATTAAA
GATCTCGAAGAAAAAGGTGTAAAAGCTACAACCCTTCAAGAAAGTTCAAACCAAACTTAT
GCTCCATGGTTTCCAAGAAAAATTTCAGATTTAGATTTATTTGCAAATAAAGTATTAGAA
ATGGGATCAGATTTAACTTCAGATCATCCXXXXXXXXXXTTCGTCCAGTACAAGGTTTAC
TCTCTGCTAGAGATTTCTTAAATGGTTTAGCTTTCCGTGTATTCCATGCAACTCAATATA
TTAGACATCCATCCGTACCATTATATACACCAGAACCAGATTGTTGTCATGAATTATTAG
GTCATGTTCCATTATTAGCTGATCCTGATTTCGCTGATTTTAGTCAAGAGATTGGTTTAG
CTTCAATTGGTGCTTCTGATGAAGATATTCAATTACTTAGTACTTGTTATTGGTTTACAG
TTGAATTTGGATTATGTAAAGAAGGTGATACAATTAGAGCATATGGTGCAGGTATTTTAT
CATCAACAGGTGAAATGGAACACTTTTTAACTGATAAAGCAAAAAAATTACCATTTAATC
CATTTGACGCATGCAATACTGAATATCCAATTACAACATTCCAACCACTTTACTATGTTG
CAGAAAGTTTCCAAAAAGCAAAAGAACAAATGAGACAATTTGCTGATAGCTTTAAAAAAC
CATTTTCAATTCGTTACAATTCATACACTCAATCAATTGAAATACTTGATAACAAAGNAT
AAATTATTAAATATTTGCAATGNATATTAGAAATC

laywffififttnnrln**r*k*k*tnqiknik*ngi*HRILKXQGIIPQSYHSSIFFSI
SKGSDKIGGLLEYLEIIKKHNINITRIESRPSKTEKKDYDFFLDLEYPTENNKEVEKVIK
DLEEKGVKATTLQESSNQTYAPWFPRKISDLDLFANKVLEMGSDLTSDH---

---RPVQGLLSARDFLNGLAFRVFHATQYIRHPSVPLYTPEPDCCHELLGHVPLLADPDF
ADFSQEIGLASIGASDEDIQLLSTCYWFTVEFGLCKEGDTIRAYGAGILSSTGEMEHFLT
DKAKKLPFNPFDACNTEYPITTFQPLYYVAESFQKAKEQMRQFADSFKKPFSIRYNSYTQ
SIEILDNKX*iikylqxilei

Frame A:
laywffififttnnrln**r*k*k*tnqiknik*ngi*HRILKXQGIIPQSYHSSIFFSI
SKGSDKIGGLLEYLEIIKKHNINITRIESRPSKTEKKDYDFFLDLEYPTENNKEVEKVIK
DLEEKGVKATTLQESSNQTYAPWFPRKISDLDLFANKVLEMGSDLTSDH---

---fvqykvyslleis*mv*lsvysmqlnildihpyhyihqnqivvmny*vmfhy*lili
slilvkrlv*lqlvllmkifnylvlviglqlnldyvkkviqlehmvqvfyhqqvkwntf*
likqknyhlihlthailniqlqhsnhftmlqkvskkqknk*dnllialknhfqfvtihtl
nqlkylitkxkllnicnxy*k

Frame B:
wptgflflfsqlitd*inkdknknkqtklkilnkmesntgfsrxkvlflnhiihqfsfqf
qkdlirlvdy*si*rllkniistlqelnqdhqkpkkkimisf*i*niqqktikklkrllk
iskkkv*klqpfkkvqtklmlhgfqekfqi*iylqiky*kwdqi*lqii---

---ssstrftlc*rflkwfsfpcipcnsiy*tsirtiiytrtrlls*iirscsiis*s*f
r*f*srdwfsfnwcf**rysit*ylllvys*iwim*rr*yn*siwcryfiinr*ngtlfn
**skkiti*si*rmqy*isnynipttllccrkfpkskrtnetic**l*ktifnslqfihs
in*nt**qxiny*ifamxirn

Frame C:
gllvfyfyfhn**qtklikikikinkpn*ky*ikwnltqdsqgtryyssiisfinflfnf
kri**dwwiirvfrdy*kt*yqhykn*iktiknrkkrl*flfrfrisnrkq*rs*kgy*r
srrkrcksynpsrkfkpnlcsmvskknfrfrfick*sirngirfnfrss---

---RPVQGLLSARDFLNGLAFRVFHATQYIRHPSVPLYTPEPDCCHELLGHVPLLADPDF
ADFSQEIGLASIGASDEDIQLLSTCYWFTVEFGLCKEGDTIRAYGAGILSSTGEMEHFLT
DKAKKLPFNPFDACNTEYPITTFQPLYYVAESFQKAKEQMRQFADSFKKPFSIRYNSYTQ
SIEILDNKX*iikylqxilei

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE136 (CHE136Q) /CSM/CH/CHE1-B/CHE136Q.Seq.d/                       1838   0.0
SSM681 (SSM681Q) /CSM/SS/SSM6-D/SSM681Q.Seq.d/                       1100   0.0
SFK632 (SFK632Q) /CSM/SF/SFK6-B/SFK632Q.Seq.d/                       1100   0.0
SFK580 (SFK580Q) /CSM/SF/SFK5-D/SFK580Q.Seq.d/                       1100   0.0
SFB840 (SFB840Q) /CSM/SF/SFB8-B/SFB840Q.Seq.d/                       1100   0.0
AFC478 (AFC478Q) /CSM/AF/AFC4-D/AFC478Q.Seq.d/                       1100   0.0
SFI142 (SFI142Q) /CSM/SF/SFI1-B/SFI142Q.Seq.d/                       1094   0.0
AFI283 (AFI283Q) /CSM/AF/AFI2-D/AFI283Q.Seq.d/                       1094   0.0
SFA307 (SFA307Q) /CSM/SF/SFA3-A/SFA307Q.Seq.d/                       1092   0.0
SFK602 (SFK602Q) /CSM/SF/SFK6-A/SFK602Q.Seq.d/                       1088   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG225890|0    90   9e-14  1
CN124807|CN124807.1 RHOH1_7_B07.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_7_B07_A002 3', mRNA sequence.    48   1e-08  3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   3e-07  22
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    38   1e-04  20
AP003188|AP003188.2 Clostridium perfringens str. 13 DNA, complete genome, section 4/10.    40   0.006  14
BU770913|BU770913.1 SJEDBC07 SJE Schistosoma japonicum cDNA, mRNA sequence.    48   0.022  2
Z81057|Z81057.1 Caenorhabditis elegans cosmid F10D11.              48   0.030  5
AE003782|AE003782.3 Drosophila melanogaster chromosome 2L, section 81 of 83 of the complete sequence.    38   0.045  8
BU869196|BU869196.1 M127B11 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    44   0.053  2
AP003362|AP003362.3 Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome, section 5/9.    38   0.064  13

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54XS1) RecName: Full=Probable phenylalanine-4-hydroxylase;    ...   383   e-105
BC056537_1(BC056537|pid:none) Danio rerio phenylalanine hydroxyl...   273   7e-72
AY330224_1(AY330224|pid:none) Danio rerio Pah mRNA, complete cds...   273   7e-72
AY615523_1(AY615523|pid:none) Gallus gallus neuronal tryptophan ...   263   8e-69
BC013458_1(BC013458|pid:none) Mus musculus phenylalanine hydroxy...   262   1e-68
DQ479389_1(DQ479389|pid:none) Aplysia californica tryptophan 5-m...   262   1e-68
AE014296_1395(AE014296|pid:none) Drosophila melanogaster chromos...   261   2e-68
EU362615_1(EU362615|pid:none) Drosophila melanogaster henna muta...   261   2e-68
(P17276) RecName: Full=Protein henna; Includes:   RecName: Full=...   261   2e-68
(Q0EAB8) RecName: Full=Tryptophan 5-hydroxylase 2;          EC=1...   261   3e-68

 psg: 0.92  gvh: 0.35  alm: 0.43  top: 0.40  tms: 0.00  mit: 0.39  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 28.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for CHE136 is cyt

>CHE136F.Seq
TTGGCCTACTGGTTTTTTATTTTTATTTTCACAACTAATAACAGACTAAATTAATAAAGA
TAAAAATAAAAATAAACAAACCAAATTAAAAATATTAAATAAAATGGAATCTAACACAGG
ATTCTCAAGGNACAAGGTATTATTCCTCAATCATATCATTCATCAATTTTCTTTTCAATT
TCAAAAGGATCTGATAAGATTGGTGGATTATTAGAGTATTTAGAGATTATTAAAAAACAT
AATATCAACATTACAAGAATTGAATCAAGACCATCAAAAACCGAAAAAAAAGATTATGAT
TTCTTTTTAGATTTAGAATATCCAACAGAAAACAATAAAGAAGTTGAAAAGGTTATTAAA
GATCTCGAAGAAAAAGGTGTAAAAGCTACAACCCTTCAAGAAAGTTCAAACCAAACTTAT
GCTCCATGGTTTCCAAGAAAAATTTCAGATTTAGATTTATTTGCAAATAAAGTATTAGAA
ATGGGATCAGATTTAACTTCAGATCATCCNNNNNNNNNN

>CHE136Z.Seq
NNNNNNNNNNTTCGTCCAGTACAAGGTTTACTCTCTGCTAGAGATTTCTTAAATGGTTTA
GCTTTCCGTGTATTCCATGCAACTCAATATATTAGACATCCATCCGTACCATTATATACA
CCAGAACCAGATTGTTGTCATGAATTATTAGGTCATGTTCCATTATTAGCTGATCCTGAT
TTCGCTGATTTTAGTCAAGAGATTGGTTTAGCTTCAATTGGTGCTTCTGATGAAGATATT
CAATTACTTAGTACTTGTTATTGGTTTACAGTTGAATTTGGATTATGTAAAGAAGGTGAT
ACAATTAGAGCATATGGTGCAGGTATTTTATCATCAACAGGTGAAATGGAACACTTTTTA
ACTGATAAAGCAAAAAAATTACCATTTAATCCATTTGACGCATGCAATACTGAATATCCA
ATTACAACATTCCAACCACTTTACTATGTTGCAGAAAGTTTCCAAAAAGCAAAAGAACAA
ATGAGACAATTTGCTGATAGCTTTAAAAAACCATTTTCAATTCGTTACAATTCATACACT
CAATCAATTGAAATACTTGATAACAAAGNATAAATTATTAAATATTTGCAATGNATATTA
GAAATC

>CHE136P.Seq
TTGGCCTACTGGTTTTTTATTTTTATTTTCACAACTAATAACAGACTAAATTAATAAAGA
TAAAAATAAAAATAAACAAACCAAATTAAAAATATTAAATAAAATGGAATCTAACACAGG
ATTCTCAAGGNACAAGGTATTATTCCTCAATCATATCATTCATCAATTTTCTTTTCAATT
TCAAAAGGATCTGATAAGATTGGTGGATTATTAGAGTATTTAGAGATTATTAAAAAACAT
AATATCAACATTACAAGAATTGAATCAAGACCATCAAAAACCGAAAAAAAAGATTATGAT
TTCTTTTTAGATTTAGAATATCCAACAGAAAACAATAAAGAAGTTGAAAAGGTTATTAAA
GATCTCGAAGAAAAAGGTGTAAAAGCTACAACCCTTCAAGAAAGTTCAAACCAAACTTAT
GCTCCATGGTTTCCAAGAAAAATTTCAGATTTAGATTTATTTGCAAATAAAGTATTAGAA
ATGGGATCAGATTTAACTTCAGATCATCC----------TTCGTCCAGTACAAGGTTTAC
TCTCTGCTAGAGATTTCTTAAATGGTTTAGCTTTCCGTGTATTCCATGCAACTCAATATA
TTAGACATCCATCCGTACCATTATATACACCAGAACCAGATTGTTGTCATGAATTATTAG
GTCATGTTCCATTATTAGCTGATCCTGATTTCGCTGATTTTAGTCAAGAGATTGGTTTAG
CTTCAATTGGTGCTTCTGATGAAGATATTCAATTACTTAGTACTTGTTATTGGTTTACAG
TTGAATTTGGATTATGTAAAGAAGGTGATACAATTAGAGCATATGGTGCAGGTATTTTAT
CATCAACAGGTGAAATGGAACACTTTTTAACTGATAAAGCAAAAAAATTACCATTTAATC
CATTTGACGCATGCAATACTGAATATCCAATTACAACATTCCAACCACTTTACTATGTTG
CAGAAAGTTTCCAAAAAGCAAAAGAACAAATGAGACAATTTGCTGATAGCTTTAAAAAAC
CATTTTCAATTCGTTACAATTCATACACTCAATCAATTGAAATACTTGATAACAAAGNAT
AAATTATTAAATATTTGCAATGNATATTAGAAATC