>CHE131 (CHE131Q) /CSM/CH/CHE1-B/CHE131Q.Seq.d/
XXXXXXXXXXGAAACCCAAAAGGATGCCAATAGACTCACGTCTGATGTTAAGAATGAATC
AAATAAAATCTATNNAGATATTAAGGATGAATCAAATGGGCTCTACAATGATGTNAAGGG
TNAATCAAGTAANATCTATAATGGTGCTAAAAAAGAAGGTTCCAAATTGGCTACCGATCT
CAAGAAGGATACTCAATACGTTGCAGATGCAACCAAAAANATGGCAGCTGATCNCAANAA
TAAAGCCGCTGATACCTATCAAGACCTTTCTCATGCCGCCTCAAAGAAAGCCACTCAACT
CAAAAAGAAAGCTAGTGAAACCCTTGATGAATCTGCCGATGCTATTGAACATCAANNCGA
TATAATGAAGAAAGATTT

---TQKDANRLTSDVKNESNKIYXDIKDESNGLYNDVKGXSSXIYNGAKKEGSKLATDLK
KDTQYVADATKXMAADXXNKAADTYQDLSHAASKKATQLKKKASETLDESADAIEHQXDI
MKKD

Frame A:
---kpkrmpidsrlmlrmnqiksxxilrmnqmgstmmxrvnqvxsimvlkkkvpnwlpis
rrilntlqmqpkxwqlixxikplipiktflmppqrkplnskrklvkplmnlpmllnixxi
**rki


Frame B:
---npkgcq*thv*c*e*ik*nlxry*g*ikwalq*cxgxik*xl*wc*krrfqigyrsq
egysircrcnqkxgs*sqx*sr*ylsrpfscrlkeshstqkes**np**icrcy*tsxry
neerf


Frame C:
---TQKDANRLTSDVKNESNKIYXDIKDESNGLYNDVKGXSSXIYNGAKKEGSKLATDLK
KDTQYVADATKXMAADXXNKAADTYQDLSHAASKKATQLKKKASETLDESADAIEHQXDI
MKKD

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE131 (CHE131Q) /CSM/CH/CHE1-B/CHE131Q.Seq.d/                        670   0.0
CHN207 (CHN207Q) /CSM/CH/CHN2-A/CHN207Q.Seq.d/                        617   e-176
SHE842 (SHE842Q) /CSM/SH/SHE8-B/SHE842Q.Seq.d/                        615   e-175
SFL486 (SFL486Q) /CSM/SF/SFL4-D/SFL486Q.Seq.d/                        615   e-175
SFI625 (SFI625Q) /CSM/SF/SFI6-B/SFI625Q.Seq.d/                        615   e-175
SFG280 (SFG280Q) /CSM/SF/SFG2-D/SFG280Q.Seq.d/                        615   e-175
SFF316 (SFF316Q) /CSM/SF/SFF3-A/SFF316Q.Seq.d/                        615   e-175
SFE175 (SFE175Q) /CSM/SF/SFE1-D/SFE175Q.Seq.d/                        615   e-175
SFD712 (SFD712Q) /CSM/SF/SFD7-A/SFD712Q.Seq.d/                        615   e-175
SFD202 (SFD202Q) /CSM/SF/SFD2-A/SFD202Q.Seq.d/                        615   e-175

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY392441|AY392441.1 Dictyostelium discoideum possible blackjack gene, complete cds.   615   e-172  1
L08500|L08500.1 Plasmodium vinckei cysteine proteinase gene sequence.    44   1.4    1
BG736559|BG736559.1 rk59a05.y1 Meloidogyne javanica egg pAMP1 v6 Chiapelli McCarter Meloidogyne javanica cDNA 5', mRNA sequence.    38   2.7    2
BZ427917|BZ427917.1 BONRK33TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK33, DNA sequence.    30   3.4    2
AC127334|AC127334.2 Mus musculus chromosome UNK clone RP23-137P16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    34   4.9    4
AE015919|AE015919.1 Shewanella oneidensis MR-1 megaplasmid section 11 of 15 of the complete sequence.    42   5.2    2
AC126112|AC126112.2 Rattus norvegicus clone CH230-76G2, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    30   8.9    2
AC111252|AC111252.5 Rattus norvegicus clone CH230-19B4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    30   8.9    2
AC136865|AC136865.2 Rattus norvegicus clone CH230-331N21, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    30   9.0    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY392441_1(AY392441|pid:none) Dictyostelium discoideum possible ...   216   1e-55
AC117076_42(AC117076|pid:none) Dictyostelium discoideum chromoso...    52   8e-06
CP000746_1366(CP000746|pid:none) Actinobacillus succinogenes 130...    49   7e-05
Z73975_1(Z73975|pid:none) Caenorhabditis elegans Cosmid T06E8, c...    49   7e-05
Z73975_2(Z73975|pid:none) Caenorhabditis elegans Cosmid T06E8, c...    49   7e-05
CP000826_3508(CP000826|pid:none) Serratia proteamaculans 568, co...    45   6e-04
AB011475_6(AB011475|pid:none) Arabidopsis thaliana genomic DNA, ...    44   0.002
L42023_1429(L42023|pid:none) Haemophilus influenzae Rd KW20, com...    43   0.003
CP001114_927(CP001114|pid:none) Deinococcus deserti VCD115, comp...    41   0.011
AE014188_364(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.018

 psg: 0.45  gvh: 0.19  alm: 0.64  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for CHE131 is nuc

>CHE131Z.Seq
NNNNNNNNNNGAAACCCAAAAGGATGCCAATAGACTCACGTCTGATGTTAAGAATGAATC
AAATAAAATCTATNNAGATATTAAGGATGAATCAAATGGGCTCTACAATGATGTNAAGGG
TNAATCAAGTAANATCTATAATGGTGCTAAAAAAGAAGGTTCCAAATTGGCTACCGATCT
CAAGAAGGATACTCAATACGTTGCAGATGCAACCAAAAANATGGCAGCTGATCNCAANAA
TAAAGCCGCTGATACCTATCAAGACCTTTCTCATGCCGCCTCAAAGAAAGCCACTCAACT
CAAAAAGAAAGCTAGTGAAACCCTTGATGAATCTGCCGATGCTATTGAACATCAANNCGA
TATAATGAAGAAAGATTT