CHE120
Library CH
(Link to library)
Clone ID CHE120
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11687-1
Original site URL
Representative seq. ID CHE120P
(Link to Original site)
Representative DNA sequence
>CHE120 (CHE120Q) /CSM/CH/CHE1-A/CHE120Q.Seq.d/
TTGGCCTACTGGGTGTAAAAAGTCAATCAAATATGGGATCATTACGTGGTATTGATTTAG
CACCAGTTGTAATTGGTAGTGTACAAAATCAATTCCCTAAATTTTTAATAGTGGATCCAA
AGAATGATACTTTCACCAGTACAATCAATGGTCCATCAGCCGATGCATTAGAGTCAACAT
TTCATAGTTGTTTTAATAATAATTTCTATGCTCGTACAATTTCAACCTATCCTCACTTAC
CAAATCATCCAAAACGTGAGGGTGACCCAATTTGCGATCATTTCTGTGTACAAATTCAAG
CAAGTCGTATCATTGCAGCCGTTGCTGANGGTTGTAATTGGGGTTCCCGTCCAGCCGAAG
CTGCAACCAGAGCATCCATTAGTTTTGTTGATTTCATGAGCAAAGCATTGTCTTCAGAGA
TTCAAACCGTTCAAGACGCXXXXXXXXXXAAAACCAAATATACTCAAGANATTCCTCAAG
AAANAACTTAGAACTCATGATCAAGAACAAGATCCTATCNCCGCCAAATTTATCGNTGAA
AAATTGGTTGAACATTGTGTTGAAACCACTAAATCTTCAAGAGAATTCATGGTTAATTTC
CTTAATNAACCTTTACCTCATAATCTCAAAGAAT
sequence update 2002.10.25
Translated Amino Acid sequence
GLLGVKSQSNMGSLRGIDLAPVVIGSVQNQFPKFLIVDPKNDTFTSTINGPSADALESTF
HSCFNNNFYARTISTYPHLPNHPKREGDPICDHFCVQIQASRIIAAVAXGCNWGSRPAEA
ATRASISFVDFMSKALSSEIQTVQD---

---KPNILKXFLKKXLRTHDQEQDPIXAKFIXEKLVEHCVETTKSSREFMVNFLNXPLPH
NLKE


Translated Amino Acid sequence (All Frames)
Frame A:
laywv*kvnqiwdhyvvli*hql*lvvykinslnf**wiqrmilspvqsmvhqpmh*sqh
fivvliiismlvqfqpiltyqiiqnvrvtqfaiisvykfkqvvslqpllxvvigvpvqpk
lqpehplvllis*akhclqrfkpfkt---

---ktkytqxipqext*ns*srtrsyxrqiyr*kig*tlc*nh*ifkrihg*fp*xtfts
*sqr

Frame B:
wptgckksikygiitwy*fstscnw*ctksip*ifnsgske*yfhqynqwsisrcirvni
s*lf***flcsynfnlssltksskt*g*pnlrsflctnssksyhcsrc*xl*lgfpssrs
cnqsih*fc*fheqsivfrdsnrsrr---

---KPNILKXFLKKXLRTHDQEQDPIXAKFIXEKLVEHCVETTKSSREFMVNFLNXPLPH
NLKE

Frame C:
GLLGVKSQSNMGSLRGIDLAPVVIGSVQNQFPKFLIVDPKNDTFTSTINGPSADALESTF
HSCFNNNFYARTISTYPHLPNHPKREGDPICDHFCVQIQASRIIAAVAXGCNWGSRPAEA
ATRASISFVDFMSKALSSEIQTVQD---

---nqiysrxssrxnlelmiknkilsppnlsxknwlnivlkplnlqenswlislxnlyli
iskn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHE120 (CHE120Q) /CSM/CH/CHE1-A/CHE120Q.Seq.d/ 1162 0.0
SLE690 (SLE690Q) /CSM/SL/SLE6-D/SLE690Q.Seq.d/ 722 0.0
SSF758 (SSF758Q) /CSM/SS/SSF7-C/SSF758Q.Seq.d/ 303 2e-81
SFH508 (SFH508Q) /CSM/SF/SFH5-A/SFH508Q.Seq.d/ 42 0.010
CHA496 (CHA496Q) /CSM/CH/CHA4-D/CHA496Q.Seq.d/ 38 0.16
VSK105 (VSK105Q) /CSM/VS/VSK1-A/VSK105Q.Seq.d/ 36 0.62
VSG356 (VSG356Q) /CSM/VS/VSG3-C/VSG356Q.Seq.d/ 36 0.62
SSI463 (SSI463Q) /CSM/SS/SSI4-C/SSI463Q.Seq.d/ 36 0.62
SSE520 (SSE520Q) /CSM/SS/SSE5-A/SSE520Q.Seq.d/ 36 0.62
SLG196 (SLG196Q) /CSM/SL/SLG1-D/SLG196Q.Seq.d/ 36 0.62

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U67836|U67836.1 Dictyostelium discoideum TipA (tipA) gene, complete cds. 841 0.0 3
BX927225|BX927225.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-106F9. 42 0.003 6
CR388012|CR388012.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-203E20. 38 0.85 5
CO578364|CO578364.1 TvEST092C04 Tv30236_PT cDNA Library Trichomonas vaginalis cDNA 5', mRNA sequence. 34 1.3 2
AL928709|AL928709.27 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-127L5. 38 1.4 4
AJ242994|AJ242994.1 Nicotiana tabacum mRNA for putative preprocysteine proteinase. 34 2.4 2
AC084812|AC084812.1 Homo sapiens chromosome 8 clone RP11-477F6 map 8, *** SEQUENCING IN PROGRESS ***, 108 unordered pieces. 44 2.7 1
AC096721|AC096721.2 Homo sapiens BAC clone RP11-19C24 from 4, complete sequence. 44 2.7 1
AL451103|AL451103.7 Human DNA sequence from clone RP11-172M3 on chromosome Xp21.1-21.2. 44 2.7 1
CK424270|CK424270.1 AUF_IpSto_10_o05 Stomach cDNA library Ictalurus punctatus cDNA 5', mRNA sequence. 44 2.7 1
dna update 2004. 9.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U41278_6(U41278|pid:none) Caenorhabditis elegans cosmid F33G12, ... 35 1.7
AP006852_187(AP006852|pid:none) Candida albicans genomic DNA, ch... 33 6.4

protein update 2008.10.26
PSORT

psg: 0.76 gvh: 0.53 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CHE120 is cyt

5' end seq. ID CHE120F
5' end seq.
>CHE120F.Seq
TTGGCCTACTGGGTGTAAAAAGTCAATCAAATATGGGATCATTACGTGGTATTGATTTAG
CACCAGTTGTAATTGGTAGTGTACAAAATCAATTCCCTAAATTTTTAATAGTGGATCCAA
AGAATGATACTTTCACCAGTACAATCAATGGTCCATCAGCCGATGCATTAGAGTCAACAT
TTCATAGTTGTTTTAATAATAATTTCTATGCTCGTACAATTTCAACCTATCCTCACTTAC
CAAATCATCCAAAACGTGAGGGTGACCCAATTTGCGATCATTTCTGTGTACAAATTCAAG
CAAGTCGTATCATTGCAGCCGTTGCTGANGGTTGTAATTGGGGTTCCCGTCCAGCCGAAG
CTGCAACCAGAGCATCCATTAGTTTTGTTGATTTCATGAGCAAAGCATTGTCTTCAGAGA
TTCAAACCGTTCAAGACGCNNNNNNNNNN
Length of 5' end seq. 449
3' end seq. ID CHE120Z
3' end seq.
>CHE120Z.Seq
NNNNNNNNNNAAAACCAAATATACTCAAGANATTCCTCAAGAAANAACTTAGAACTCATG
ATCAAGAACAAGATCCTATCNCCGCCAAATTTATCGNTGAAAAATTGGTTGAACATTGTG
TTGAAACCACTAAATCTTCAAGAGAATTCATGGTTAATTTCCTTAATNAACCTTTACCTC
ATAATCTCAAAGAAT
Length of 3' end seq. 195
Connected seq. ID CHE120P
Connected seq.
>CHE120P.Seq
TTGGCCTACTGGGTGTAAAAAGTCAATCAAATATGGGATCATTACGTGGTATTGATTTAG
CACCAGTTGTAATTGGTAGTGTACAAAATCAATTCCCTAAATTTTTAATAGTGGATCCAA
AGAATGATACTTTCACCAGTACAATCAATGGTCCATCAGCCGATGCATTAGAGTCAACAT
TTCATAGTTGTTTTAATAATAATTTCTATGCTCGTACAATTTCAACCTATCCTCACTTAC
CAAATCATCCAAAACGTGAGGGTGACCCAATTTGCGATCATTTCTGTGTACAAATTCAAG
CAAGTCGTATCATTGCAGCCGTTGCTGANGGTTGTAATTGGGGTTCCCGTCCAGCCGAAG
CTGCAACCAGAGCATCCATTAGTTTTGTTGATTTCATGAGCAAAGCATTGTCTTCAGAGA
TTCAAACCGTTCAAGACGC----------AAAACCAAATATACTCAAGANATTCCTCAAG
AAANAACTTAGAACTCATGATCAAGAACAAGATCCTATCNCCGCCAAATTTATCGNTGAA
AAATTGGTTGAACATTGTGTTGAAACCACTAAATCTTCAAGAGAATTCATGGTTAATTTC
CTTAATNAACCTTTACCTCATAATCTCAAAGAAT
Length of connected seq. 624
Full length Seq ID -
Full length Seq. -
Length of full length seq. -