NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE111
Library CH
(Link to library)
Clone ID CHE111
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHE111 (CHE111Q) /CSM/CH/CHE1-A/CHE111Q.Seq.d/
AATGCTTCAATNTTGATGGATTTATTAAAATTNCAACTCCAACCGAGTNTTNTTGTTCTG
ATGCCAANATTAAANAATGNGCCTTATTAGGTAAATCATGTAGTTTCCAAAANAACTNTT
GTTCAAATCCAACTTCCTGTTGCCCAGGNGAATCAATTTGNGAAGGTTTAAGCTNTGGTA
GTTCXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
CFNXDGFIKIXTPTEXXCSDAXIKXXALLGKSCSFQXNXCSNPTSCCPGESIXEGLSXGS
---
Translated Amino Acid sequence (All Frames) 
Frame A:
nasxlmdllkxqlqpsxxvlmpxlxnxpy*vnhvvskxtxvqiqlpvaqxnqfxkv*axv
v---


Frame B:
mlqx*wiy*nxnsnrvxlf*cqx*xmxlir*im*fpkxllfksnfllprxinlxrfklw*
---


Frame C:
CFNXDGFIKIXTPTEXXCSDAXIKXXALLGKSCSFQXNXCSNPTSCCPGESIXEGLSXGS
---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLG501 (SLG501Q) /CSM/SL/SLG5-A/SLG501Q.Seq.d/                        258   3e-68
SHJ685 (SHJ685Q) /CSM/SH/SHJ6-D/SHJ685Q.Seq.d/                        258   3e-68
SHG279 (SHG279Q) /CSM/SH/SHG2-D/SHG279Q.Seq.d/                        258   3e-68
SFL426 (SFL426Q) /CSM/SF/SFL4-B/SFL426Q.Seq.d/                        258   3e-68
SFL250 (SFL250Q) /CSM/SF/SFL2-C/SFL250Q.Seq.d/                        258   3e-68
SFL223 (SFL223Q) /CSM/SF/SFL2-A/SFL223Q.Seq.d/                        258   3e-68
SFK426 (SFK426Q) /CSM/SF/SFK4-B/SFK426Q.Seq.d/                        258   3e-68
SFK212 (SFK212Q) /CSM/SF/SFK2-A/SFK212Q.Seq.d/                        258   3e-68
SFJ633 (SFJ633Q) /CSM/SF/SFJ6-B/SFJ633Q.Seq.d/                        258   3e-68
SFJ257 (SFJ257Q) /CSM/SF/SFJ2-C/SFJ257Q.Seq.d/                        258   3e-68
own update 2002.11.21
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.   172   9e-60  3
AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.   172   2e-58  3
L34079|L34079.2 Homo sapiens DNA repair protein (XRCC1), partial sequence.    36   7.4    3
AF512504|AF512504.1 Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 1 (XRCC1) gene, complete cds.    36   9.3    3
dna update 2004. 9.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    87   2e-16
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...    40   0.024
protein update 2008.10.26
PSORT 

 psg: 0.72  gvh: 0.53  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for CHE111 is cyt
5' end seq. ID CHE111F
5' end seq. 
>CHE111F.Seq
AATGCTTCAATNTTGATGGATTTATTAAAATTNCAACTCCAACCGAGTNTTNTTGTTCTG
ATGCCAANATTAAANAATGNGCCTTATTAGGTAAATCATGTAGTTTCCAAAANAACTNTT
GTTCAAATCCAACTTCCTGTTGCCCAGGNGAATCAATTTGNGAAGGTTTAAGCTNTGGTA
GTTCNNNNNNNNNN
Length of 5' end seq. 194
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -