>CHD873 (CHD873Q) /CSM/CH/CHD8-D/CHD873Q.Seq.d/
XXXXXXXXXXTAGAGTTGATGAATTAGAAAAAAGAAATANCTTTTTAGAAAAGGAATTAG
AACATTACAAGAATGAATTAGCATCAACCAGAAAGATTTTAACAGAGAGGGATAATTTAT
TGTTACAACTTCAATGGGATGAAGATGATAAAGAATTGGATGCCGATGCACAAAAGAAAA
AGAGATCAAAAGAACGTGTTGCCAATGAAGAACGTCAACAAATCACTCGTTTAAGATCAC
AAATGAAAATTATGGAAACTGCATTAGAAGAAAGGGATACAAACATTCATAAACTTCATA
AAGAATTGAGTGATTCAAAAATTCAATACCAAGTGACCGTTGATTCTCTTGCTCAAGGTA
GAGATGCCCCAGTTAGAAGTAAAACAAGTTGGGGTTTTAAATCATCACCATCCTCTTCAC
CAATGGTTTATAAACCTTCTTATTCCGCAAGTCCAATTCAAAGTGAAAAACAATATTCAG
TTGCTCCTTCTCCTGCCAATTCTCCTGCAATGAGTTCTCCAAATTTCGC

---RVDELEKRNXFLEKELEHYKNELASTRKILTERDNLLLQLQWDEDDKELDADAQKKK
RSKERVANEERQQITRLRSQMKIMETALEERDTNIHKLHKELSDSKIQYQVTVDSLAQGR
DAPVRSKTSWGFKSSPSSSPMVYKPSYSASPIQSEKQYSVAPSPANSPAMSSPNF

Frame A:
---RVDELEKRNXFLEKELEHYKNELASTRKILTERDNLLLQLQWDEDDKELDADAQKKK
RSKERVANEERQQITRLRSQMKIMETALEERDTNIHKLHKELSDSKIQYQVTVDSLAQGR
DAPVRSKTSWGFKSSPSSSPMVYKPSYSASPIQSEKQYSVAPSPANSPAMSSPNF


Frame B:
---elmn*kkeixf*krn*nitrmn*hqperf*qrgiiycynfngmkmiknwmpmhkrkr
dqknvlpmknvnkslv*dhk*klwklh*kkgiqtfinfikn*viqkfntk*plilllkve
mpqlevkqvgvlnhhhplhqwfinllipqvqfkvknniqlllllpillq*vlqis


Frame C:
---s**irkkkxlfrkgirtlqe*isinqkdfnreg*fivttsmg*r**rigcrctkeke
ikrtccq*rtstnhsfkitnenygncirrkgykhs*ts*rie*fknsipsdr*fscsr*r
cps*k*nklgf*iitilftngl*tflfrksnsk*ktifscsfscqfscnefskfr

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHD873 (CHD873Q) /CSM/CH/CHD8-D/CHD873Q.Seq.d/                       1023   0.0
CFI445 (CFI445Q) /CSM/CF/CFI4-B/CFI445Q.Seq.d/                       1023   0.0
CFG883 (CFG883Q) /CSM/CF/CFG8-D/CFG883Q.Seq.d/                       1023   0.0
AHI409 (AHI409Q) /CSM/AH/AHI4-A/AHI409Q.Seq.d/                       1023   0.0
AFI132 (AFI132Q) /CSM/AF/AFI1-B/AFI132Q.Seq.d/                       1023   0.0
SFG378 (SFG378Q) /CSM/SF/SFG3-D/SFG378Q.Seq.d/                       1009   0.0
AHM190 (AHM190Q) /CSM/AH/AHM1-D/AHM190Q.Seq.d/                       1009   0.0
SSK393 (SSK393Q) /CSM/SS/SSK3-D/SSK393Q.Seq.d/                        928   0.0
SSH366 (SSH366Q) /CSM/SS/SSH3-C/SSH366Q.Seq.d/                        920   0.0
SSH146 (SSH146Q) /CSM/SS/SSH1-B/SSH146Q.Seq.d/                        876   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D50338|D50338.1 Dictyostelium discoideum DNA for ribosomal protein, complete cds.   620   e-174  1
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    34   0.010  11
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    38   0.019  10
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   0.12   11
AC023628|AC023628.3 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete sequence.    38   0.12   4
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    32   0.12   9
AJ287320|AJ287320.1 Arabidopsis thaliana chi gene for chalcone flavanone isomerase,  exons 1-4, ecotype Yo-0.    48   0.13   1
AJ287319|AJ287319.1 Arabidopsis thaliana chi gene for chalcone flavanone isomerase,  exons 1-4, ecotype Tul-0.    48   0.13   1
AJ287318|AJ287318.1 Arabidopsis thaliana chi gene for chalcone flavanone isomerase,  exons 1-4, ecotype Ri-0.    48   0.13   1
AP001680|AP001680.1 Homo sapiens genomic DNA, chromosome 21q, section 24/105.    34   0.13   10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM872427_1(FM872427|pid:none) Echinococcus multilocularis mRNA f...    45   8e-04
AM474314_2(AM474314|pid:none) Vitis vinifera contig VV78X056190....    45   8e-04
BC159173_1(BC159173|pid:none) Xenopus tropicalis hypothetical pr...    45   0.001
DQ411847_1(DQ411847|pid:none) Physarum polycephalum rad50 mRNA, ...    44   0.002
FM992695_278(FM992695|pid:none) Candida dubliniensis CD36 chromo...    44   0.003
AF335500_1(AF335500|pid:none) Physarum polycephalum major plasmo...    43   0.004
(P25386) RecName: Full=Intracellular protein transport protein U...    43   0.004
X54378_1(X54378|pid:none) S.cerevisiae gene for Uso1 protein, in...    43   0.004
L03188_1(L03188|pid:none) Saccharomyces cerevisiae integrin anal...    43   0.004
CP000743_970(CP000743|pid:none) Methanococcus aeolicus Nankai-3,...    43   0.005

 psg: 0.54  gvh: 0.20  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 20.0 %: mitochondrial
	 12.0 %: cytoskeletal
	 12.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHD873 is nuc

>CHD873Z.Seq
NNNNNNNNNNTAGAGTTGATGAATTAGAAAAAAGAAATANCTTTTTAGAAAAGGAATTAG
AACATTACAAGAATGAATTAGCATCAACCAGAAAGATTTTAACAGAGAGGGATAATTTAT
TGTTACAACTTCAATGGGATGAAGATGATAAAGAATTGGATGCCGATGCACAAAAGAAAA
AGAGATCAAAAGAACGTGTTGCCAATGAAGAACGTCAACAAATCACTCGTTTAAGATCAC
AAATGAAAATTATGGAAACTGCATTAGAAGAAAGGGATACAAACATTCATAAACTTCATA
AAGAATTGAGTGATTCAAAAATTCAATACCAAGTGACCGTTGATTCTCTTGCTCAAGGTA
GAGATGCCCCAGTTAGAAGTAAAACAAGTTGGGGTTTTAAATCATCACCATCCTCTTCAC
CAATGGTTTATAAACCTTCTTATTCCGCAAGTCCAATTCAAAGTGAAAAACAATATTCAG
TTGCTCCTTCTCCTGCCAATTCTCCTGCAATGAGTTCTCCAAATTTCGC