CHD867
Library CH
(Link to library)
Clone ID CHD867
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14969-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHD867 (CHD867Q) /CSM/CH/CHD8-C/CHD867Q.Seq.d/
XXXXXXXXXXAAAGCAGTTCCTATTGGTTCAATGGATTTGGTTCAANTTTTAGTCCAGAA
TGGTGCAAACTTAAACTCTCAAGATGAAGAGGGTGACTCACCCTCCCATTATGCCATTCG
TGAATGCCAACCTCAAATCCTCAGTNNCCTCTTGTCAAAAGGTGCCAATGNCAACTCTTT
CAATGAAGATGGTGAATCTCTCTTACATTTATCAGCCTGTCTTGGTGA
sequence update 2002. 9.10
Translated Amino Acid sequence
---AVPIGSMDLVQXLVQNGANLNSQDEEGDSPSHYAIRECQPQILSXLLSKGANXNSFN
EDGESLLHLSACLG


Translated Amino Acid sequence (All Frames)
Frame A:
---kqfllvqwiwfxf*srmvqt*tlkmkrvthppimpfvnanlkssvxscqkvpmxtls
mkmvnlsyiyqpvlv


Frame B:
---sssywfngfgsxfspewcklklsr*rg*ltlplchs*mptsnpqxplvkrcqxqlfq
*rw*isltfislsw*


Frame C:
---AVPIGSMDLVQXLVQNGANLNSQDEEGDSPSHYAIRECQPQILSXLLSKGANXNSFN
EDGESLLHLSACLG


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHD867 (CHD867Q) /CSM/CH/CHD8-C/CHD867Q.Seq.d/ 408 e-113
VFA214 (VFA214Q) /CSM/VF/VFA2-A/VFA214Q.Seq.d/ 400 e-111
SSL708 (SSL708Q) /CSM/SS/SSL7-A/SSL708Q.Seq.d/ 400 e-111
FC-BF18 (FC-BF18Q) /CSM/FC/FC-BF/FC-BF18Q.Seq.d/ 400 e-111
FC-423 (FC-423Q) /CSM/CG/CG-FC/FC-423Q.Seq.d/ 400 e-111
AHE156 (AHE156Q) /CSM/AH/AHE1-C/AHE156Q.Seq.d/ 400 e-111
SSA443 (SSA443Q) /CSM/SS/SSA4-B/SSA443Q.Seq.d/ 392 e-109
FC-BE12 (FC-BE12Q) /CSM/FC/FC-BE/FC-BE12Q.Seq.d/ 289 9e-78
CHC848 (CHC848Q) /CSM/CH/CHC8-B/CHC848Q.Seq.d/ 250 8e-66
SLC314 (SLC314Q) /CSM/SL/SLC3-A/SLC314Q.Seq.d/ 234 5e-61

own update 2002.11.21
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 400 e-108 1
AC114854|AC114854.4 Rattus norvegicus clone CH230-287P8, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 40 1.5 2
AP002067|AP002067.2 Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T7B9. 42 3.1 1
AC092713|AC092713.2 Homo sapiens chromosome 17, clone CTC-780D20, complete sequence. 42 3.1 1
AC005561|AC005561.3 Arabidopsis thaliana chromosome 2 clone T9F8 map mi310, complete sequence. 42 3.1 1
AC114524|AC114524.4 Rattus norvegicus clone CH230-37N6, WORKING DRAFT SEQUENCE, 2 unordered pieces. 40 12 1
CD419731|CD419731.1 rj14d09.y1 Meloidogyne chitwoodi egg pAMP1 v1 Meloidogyne chitwoodi cDNA 5', mRNA sequence. 40 12 1
AC105654|AC105654.3 Rattus norvegicus clone CH230-201P14, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 40 12 1
AC125937|AC125937.3 Rattus norvegicus clone CH230-11B2, WORKING DRAFT SEQUENCE, 3 unordered pieces. 40 12 1
BX649232|BX649232.1 Mouse DNA sequence from clone RP23-271J11 on chromosome 2. 40 12 1
dna update 2004. 2. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM999887_409(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 61 1e-08
CP001102_1268(CP001102|pid:none) Candidatus Amoebophilus asiatic... 57 2e-07
AM997268_1(AM997268|pid:none) Synthetic construct for CD4-specif... 55 1e-06
AY195853_1(AY195853|pid:none) Synthetic construct ankyrin repeat... 54 2e-06
AM997270_1(AM997270|pid:none) Synthetic construct for CD4-specif... 53 3e-06
(Q4UMH6) RecName: Full=Putative ankyrin repeat protein RF_0381; ... 53 3e-06
(Q8N283) RecName: Full=Ankyrin repeat domain-containing protein ... 53 4e-06
BC138276_1(BC138276|pid:none) Mus musculus ankyrin repeat domain... 53 4e-06
AK039772_1(AK039772|pid:none) Mus musculus adult male spinal cor... 53 4e-06
DQ491002_24(DQ491002|pid:none) Paramecium bursaria Chlorella vir... 52 5e-06
protein update 2009. 5.18
PSORT

psg: 0.75 gvh: 0.55 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: cytoskeletal
16.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar

>> prediction for CHD867 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHD867Z
3' end seq.
>CHD867Z.Seq
NNNNNNNNNNAAAGCAGTTCCTATTGGTTCAATGGATTTGGTTCAANTTTTAGTCCAGAA
TGGTGCAAACTTAAACTCTCAAGATGAAGAGGGTGACTCACCCTCCCATTATGCCATTCG
TGAATGCCAACCTCAAATCCTCAGTNNCCTCTTGTCAAAAGGTGCCAATGNCAACTCTTT
CAATGAAGATGGTGAATCTCTCTTACATTTATCAGCCTGTCTTGGTGA
Length of 3' end seq. 228
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -