CHD852
Library CH
(Link to library)
Clone ID CHD852
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16444-1
Original site URL
Representative seq. ID CHD852P
(Link to Original site)
Representative DNA sequence
>CHD852 (CHD852Q) /CSM/CH/CHD8-C/CHD852Q.Seq.d/
ATTTTTATTTTTAAGACGAAAAGATATATAAATATTTAAACAAAAAAAAAANCAATNTGG
AAGGATTTGATCATGTTACATTTNGGGTNGGTAANGCATTACAAGCAGCANCTTATTACA
TTGCTAGATTNGGATTTNAAAATTTAXXXXXXXXXXAATAGATCATGTCGTTTCAAATCA
TGCAGATAAAATGATGGAACCAGTCGTTCAATGGTACGAAAAGGTTTTACAATTCCACCG
TTTCTGGTCAGTTGATGACAAAACCATTCATACCGAATATTCATCATTAAGATCAGTCGT
AGTTGCTGATAAGTCTGAAAAAGTTAAATTACCAATTAATGAACCAGCCAATGGTATTAG
AAAGAGTCAAATTCAAGAATACGTAGATTTCTACAATGGTGCTGGTGTTCAACATATCGC
CTTAAAGACTGATAACATCATTGATGCTATCTCAAAATTAAGATCTCGTGGTGTCTCTTT
CCTCACTGTTCCAAAAACATACTATACATCACTCAGAGAGAAATTACAACACTCTTCATT
AGAAATTAAAGAAGATTTGGACACTTTAGAGAAATTACACATTTTAATCGATTATGATGA
CAAAGGTTATCTTTTACAAATCTTTACAAATAATGTTGAAGATAAACCAACTGTTTTCTT
TGAAATTATCCAAAGAAACAACCATGATGGTTTCGGTGCTGGTAACTTTAAATCCCTCTT
TGAAGCAATCGAAAGACAACAAGAAACTCGTGGAAACTTATAGGTGTGTCTCAATTACAA
ATGTTCTTTATTATTAACTAAATAACATTACAATATATCAAAATAAATAATAAATAAAAC
TCATTTAAAAAGNATTTTTT
sequence update 2002.10.25
Translated Amino Acid sequence
fyf*DEKIYKYLNKKKXNXEGFDHVTFXVGXALQAAXYYIARXGFXNL---

---IDHVVSNHADKMMEPVVQWYEKVLQFHRFWSVDDKTIHTEYSSLRSVVVADKSEKVK
LPINEPANGIRKSQIQEYVDFYNGAGVQHIALKTDNIIDAISKLRSRGVSFLTVPKTYYT
SLREKLQHSSLEIKEDLDTLEKLHILIDYDDKGYLLQIFTNNVEDKPTVFFEIIQRNNHD
GFGAGNFKSLFEAIERQQETRGNL*vclnykcsllltk*hynisk*iinkthlkxif


Translated Amino Acid sequence (All Frames)
Frame A:
ififktkryini*tkkkxxwkdlimlhxgxvxhykqxlitlldxdxki---

---nrscrfkscr*ndgtsrsmvrkgftippflvs**qnhsyrifiikisrsc**v*ks*
itn**tsqwy*kesnsrirrflqwcwcstyrlkd**hh*cylkikiswclfphcsknily
itqreittlfirn*rrfghfreithfnrl**qrlsftnlyk*c*r*tncfl*nypkkqp*
wfrcw*l*ipl*snrkttrnswkligvsqlqmffiin*itlqyikinnk*nsfkkxf

Frame B:
flflrrkdi*ifkqkkxqxgri*scyixgx*xitssxllhc*ixixkf---

---IDHVVSNHADKMMEPVVQWYEKVLQFHRFWSVDDKTIHTEYSSLRSVVVADKSEKVK
LPINEPANGIRKSQIQEYVDFYNGAGVQHIALKTDNIIDAISKLRSRGVSFLTVPKTYYT
SLREKLQHSSLEIKEDLDTLEKLHILIDYDDKGYLLQIFTNNVEDKPTVFFEIIQRNNHD
GFGAGNFKSLFEAIERQQETRGNL*vclnykcsllltk*hynisk*iinkthlkxif

Frame C:
fyf*DEKIYKYLNKKKXNXEGFDHVTFXVGXALQAAXYYIARXGFXNL---

---*imsfqimqik*wnqsfngtkrfynstvsgqlmtkpfipnihh*dqs*llislkkln
yqlmnqpmvlervkfknt*istmvlvfnisp*rlitslmlsqn*dlvvslsslfqkhtih
hsernyntlh*klkkiwtl*rnytf*simmtkvifykslqimlkinqlfslklskettmm
vsvlvtlnpslkqskdnkklvetyrcvsitnvlyy*lnnitiyqnk**ikli*kxff

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSH226 (VSH226Q) /CSM/VS/VSH2-B/VSH226Q.Seq.d/ 1251 0.0
VSD101 (VSD101Q) /CSM/VS/VSD1-A/VSD101Q.Seq.d/ 1251 0.0
VFO488 (VFO488Q) /CSM/VF/VFO4-D/VFO488Q.Seq.d/ 1251 0.0
VFN348 (VFN348Q) /CSM/VF/VFN3-B/VFN348Q.Seq.d/ 1251 0.0
VFN241 (VFN241Q) /CSM/VF/VFN2-B/VFN241Q.Seq.d/ 1251 0.0
VFM130 (VFM130Q) /CSM/VF/VFM1-B/VFM130Q.Seq.d/ 1251 0.0
VFL704 (VFL704Q) /CSM/VF/VFL7-A/VFL704Q.Seq.d/ 1251 0.0
VFL673 (VFL673Q) /CSM/VF/VFL6-D/VFL673Q.Seq.d/ 1251 0.0
VFL272 (VFL272Q) /CSM/VF/VFL2-C/VFL272Q.Seq.d/ 1251 0.0
VFK534 (VFK534Q) /CSM/VF/VFK5-B/VFK534Q.Seq.d/ 1251 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 1251 0.0 11
BI322343|BI322343.1 kx19h02.y3 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:HPPD_CAEEL Q22633 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE ;, mRNA sequence. 42 9e-10 4
BI502176|BI502176.1 kt86c08.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:HPPD_CAEEL Q22633 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE ;, mRNA sequence. 36 2e-09 5
CO006156|CO006156.1 EST794491 Coccidioides posadasii spherule cDNA library, 0.4 to 2.3 kb Coccidioides posadasii cDNA clone CIEAT15 3' end, mRNA sequence. 52 7e-08 2
CO013595|CO013595.1 EST801930 Coccidioides posadasii spherule cDNA library, 0.4 to 2.3 kb Coccidioides posadasii cDNA clone CIEBZ67 5' end, mRNA sequence. 52 9e-08 2
CO005676|CO005676.1 EST794011 Coccidioides posadasii spherule cDNA library, 0.4 to 2.3 kb Coccidioides posadasii cDNA clone CIEAQ39 3' end, mRNA sequence. 52 9e-08 2
CO009511|CO009511.1 EST797846 Coccidioides posadasii spherule cDNA library, 0.4 to 2.3 kb Coccidioides posadasii cDNA clone CIEBC24 5' end, mRNA sequence. 52 9e-08 2
CO009510|CO009510.1 EST797845 Coccidioides posadasii spherule cDNA library, 0.4 to 2.3 kb Coccidioides posadasii cDNA clone CIEBC24 3' end, mRNA sequence. 52 1e-07 2
L38493|L38493.1 Coccidioides immitis T-cell reactive protein (trcP) gene exons 1-4, complete cds. 52 2e-07 2
CO005677|CO005677.1 EST794012 Coccidioides posadasii spherule cDNA library, 0.4 to 2.3 kb Coccidioides posadasii cDNA clone CIEAQ39 5' end, mRNA sequence. 52 2e-06 2
dna update 2004. 9.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q76NV5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase; ... 405 e-112
AM114773_1(AM114773|pid:none) Platynereis dumerilii partial mRNA... 288 2e-76
AE014296_3563(AE014296|pid:none) Drosophila melanogaster chromos... 287 3e-76
BC046075_1(BC046075|pid:none) Danio rerio zgc:56326, mRNA (cDNA ... 282 1e-74
(Q6TGZ5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase; ... 282 1e-74
BC153801_1(BC153801|pid:none) Xenopus laevis hypothetical protei... 281 2e-74
S32821(S32821;S35890;S35889)4-hydroxyphenylpyruvate dioxygenase ... 280 4e-74
(Q02110) RecName: Full=4-hydroxyphenylpyruvate dioxygenase; ... 280 4e-74
BC077167_1(BC077167|pid:none) Danio rerio 4-hydroxyphenylpyruvat... 278 1e-73
(P32754) RecName: Full=4-hydroxyphenylpyruvate dioxygenase; ... 276 5e-73
protein update 2009. 3.30
PSORT

psg: 0.48 gvh: 0.47 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
24.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CHD852 is nuc

5' end seq. ID CHD852F
5' end seq.
>CHD852F.Seq
ATTTTTATTTTTAAGACGAAAAGATATATAAATATTTAAACAAAAAAAAAANCAATNTGG
AAGGATTTGATCATGTTACATTTNGGGTNGGTAANGCATTACAAGCAGCANCTTATTACA
TTGCTAGATTNGGATTTNAAAATTTANNNNNNNNNN
Length of 5' end seq. 156
3' end seq. ID CHD852Z
3' end seq.
>CHD852Z.Seq
NNNNNNNNNNAATAGATCATGTCGTTTCAAATCATGCAGATAAAATGATGGAACCAGTCG
TTCAATGGTACGAAAAGGTTTTACAATTCCACCGTTTCTGGTCAGTTGATGACAAAACCA
TTCATACCGAATATTCATCATTAAGATCAGTCGTAGTTGCTGATAAGTCTGAAAAAGTTA
AATTACCAATTAATGAACCAGCCAATGGTATTAGAAAGAGTCAAATTCAAGAATACGTAG
ATTTCTACAATGGTGCTGGTGTTCAACATATCGCCTTAAAGACTGATAACATCATTGATG
CTATCTCAAAATTAAGATCTCGTGGTGTCTCTTTCCTCACTGTTCCAAAAACATACTATA
CATCACTCAGAGAGAAATTACAACACTCTTCATTAGAAATTAAAGAAGATTTGGACACTT
TAGAGAAATTACACATTTTAATCGATTATGATGACAAAGGTTATCTTTTACAAATCTTTA
CAAATAATGTTGAAGATAAACCAACTGTTTTCTTTGAAATTATCCAAAGAAACAACCATG
ATGGTTTCGGTGCTGGTAACTTTAAATCCCTCTTTGAAGCAATCGAAAGACAACAAGAAA
CTCGTGGAAACTTATAGGTGTGTCTCAATTACAAATGTTCTTTATTATTAACTAAATAAC
ATTACAATATATCAAAATAAATAATAAATAAAACTCATTTAAAAAGNATTTTTT
Length of 3' end seq. 714
Connected seq. ID CHD852P
Connected seq.
>CHD852P.Seq
ATTTTTATTTTTAAGACGAAAAGATATATAAATATTTAAACAAAAAAAAAANCAATNTGG
AAGGATTTGATCATGTTACATTTNGGGTNGGTAANGCATTACAAGCAGCANCTTATTACA
TTGCTAGATTNGGATTTNAAAATTTA----------AATAGATCATGTCGTTTCAAATCA
TGCAGATAAAATGATGGAACCAGTCGTTCAATGGTACGAAAAGGTTTTACAATTCCACCG
TTTCTGGTCAGTTGATGACAAAACCATTCATACCGAATATTCATCATTAAGATCAGTCGT
AGTTGCTGATAAGTCTGAAAAAGTTAAATTACCAATTAATGAACCAGCCAATGGTATTAG
AAAGAGTCAAATTCAAGAATACGTAGATTTCTACAATGGTGCTGGTGTTCAACATATCGC
CTTAAAGACTGATAACATCATTGATGCTATCTCAAAATTAAGATCTCGTGGTGTCTCTTT
CCTCACTGTTCCAAAAACATACTATACATCACTCAGAGAGAAATTACAACACTCTTCATT
AGAAATTAAAGAAGATTTGGACACTTTAGAGAAATTACACATTTTAATCGATTATGATGA
CAAAGGTTATCTTTTACAAATCTTTACAAATAATGTTGAAGATAAACCAACTGTTTTCTT
TGAAATTATCCAAAGAAACAACCATGATGGTTTCGGTGCTGGTAACTTTAAATCCCTCTT
TGAAGCAATCGAAAGACAACAAGAAACTCGTGGAAACTTATAGGTGTGTCTCAATTACAA
ATGTTCTTTATTATTAACTAAATAACATTACAATATATCAAAATAAATAATAAATAAAAC
TCATTTAAAAAGNATTTTTT
Length of connected seq. 850
Full length Seq ID -
Full length Seq. -
Length of full length seq. -