CHD848
Library CH
(Link to library)
Clone ID CHD848
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13873-1
Original site URL
Representative seq. ID CHD848P
(Link to Original site)
Representative DNA sequence
>CHD848 (CHD848Q) /CSM/CH/CHD8-B/CHD848Q.Seq.d/
ATTATTATTTTTAATATTTTAATAATTATAATTTTAAAAAATGAGTATTGAATCAATTAA
AGCTAGAGAAATTTTGGATAGTAGAGGTAATCCAACATTAGAAGTTGAAGTATGGACAAG
TGAAGGAATGTTTTCAGCCAAAGTACCAAGTGGAGCATCAACTGGTATTCATGAAGCATT
TGAATTAAGAGATGGTGATAAAAGTCGTTATTTTGGATATGGTGTTTTGAATGCAATTGT
TAATGTAAATAATTTAATATCACCAACATTGAAAGGTATGAGAGTTGATAATCAAAAAGC
AATAGATGATAAAATGATTGAATTGGATGGTACAAAGAATAAATCAAAACTTGGGTCCAA
TGCAATCGTTGGTGTATCAATGGCAGTGGCAAGAGCAGCCGCTTCTATTAAAGGTGTGCC
CTTGTACCGTTACATTTCACAATTGGCTGGAAATAGTAATATTCGTTTACCAGTACCATG
TTTTAATGTTATTAATGGTGGAAAACATGCAGGTAATAGACTACCATTTCAAGAGTTTAT
GCTAGTACCCATTGGTGCACCAAAATTTAAAGAXXXXXXXXXXGCACCAAATTTGACTTC
ACCTGAAGAAGCATTAACTCTGTTAGTGGATGCTATCAATCATTCGGGCTATCAAGATGT
TATTAAAATTGGTATTGATTCTGCTGCTTCAGAATTTTGGAATCCAAAGACTTCAAAATA
TGATATGGATTTCAAGAATATAGGATCCTCACATTTGAAGTCTAGTTTAAATAGTGGTGA
GCAATTAATGTCTAGATATTTAGAGATTTTAAAAAAGTATCCAATTGCATTCTTTGAAGA
TCCATTTGGTGAAGATGATTGGGAAAATCATGGTAAAATTACAGCTGCAATTGGTAATAA
AATTCAAATCATTGGTGATGATTTACTTTGTACAAATCCAGAAAGAATTAAAAAAGCAAT
TTCTGAGAAAGCTGTAAATTCATTATTATTGAAAATAAATCAAATCGGTACACTAACTGA
AACTATTGAAGCTGCAAAACTTGCAAAAGAAGCTGGTTGGGGTTGTTTAGTTAGTCATCG
TTCAGGTGAAACTGATGATCATTTCATTGCTGATCTTGTAGTTGGTCTTGGTACTGGTGA
AATAAAATCTGGTGCACCTTGTAGATTTGAAAGATTATCAAAATATAATAGATTAATGAA
AATTGAAGAAGAACTTGAAAAACTTCATAGATCAAATGGTAATTCATT
sequence update 2002.10.25
Translated Amino Acid sequence
llflif**l*f*KMSIESIKAREILDSRGNPTLEVEVWTSEGMFSAKVPSGASTGIHEAF
ELRDGDKSRYFGYGVLNAIVNVNNLISPTLKGMRVDNQKAIDDKMIELDGTKNKSKLGSN
AIVGVSMAVARAAASIKGVPLYRYISQLAGNSNIRLPVPCFNVINGGKHAGNRLPFQEFM
LVPIGAPKFK---

---APNLTSPEEALTLLVDAINHSGYQDVIKIGIDSAASEFWNPKTSKYDMDFKNIGSSH
LKSSLNSGEQLMSRYLEILKKYPIAFFEDPFGEDDWENHGKITAAIGNKIQIIGDDLLCT
NPERIKKAISEKAVNSLLLKINQIGTLTETIEAAKLAKEAGWGCLVSHRSGETDDHFIAD
LVVGLGTGEIKSGAPCRFERLSKYNRLMKIEEELEKLHRSNGNS


Translated Amino Acid sequence (All Frames)
Frame A:
iiifniliiiilkney*in*s*rnfg**r*snirs*smdk*rnvfsqstkwsinwys*si
*ikrw**kslfwiwcfecnc*ck*fnitnieryes**sksnr**nd*igwyke*iktwvq
cnrwcingsgkssrfy*rcalvplhftigwk**ysftstmf*cy*wwktcr**ttisrvy
asthwctki*r---

---APNLTSPEEALTLLVDAINHSGYQDVIKIGIDSAASEFWNPKTSKYDMDFKNIGSSH
LKSSLNSGEQLMSRYLEILKKYPIAFFEDPFGEDDWENHGKITAAIGNKIQIIGDDLLCT
NPERIKKAISEKAVNSLLLKINQIGTLTETIEAAKLAKEAGWGCLVSHRSGETDDHFIAD
LVVGLGTGEIKSGAPCRFERLSKYNRLMKIEEELEKLHRSNGNS

Frame B:
llflif**l*f*KMSIESIKAREILDSRGNPTLEVEVWTSEGMFSAKVPSGASTGIHEAF
ELRDGDKSRYFGYGVLNAIVNVNNLISPTLKGMRVDNQKAIDDKMIELDGTKNKSKLGSN
AIVGVSMAVARAAASIKGVPLYRYISQLAGNSNIRLPVPCFNVINGGKHAGNRLPFQEFM
LVPIGAPKFK---

---hqi*lhlkkh*lc*wmlsiiraikmllklvlilllqnfgiqrlqnmiwisri*dphi
*slv*ivvsn*cldi*rf*ksiqlhslkihlvkmigkimvklqlqlvikfkslvmiyfvq
iqkelkkqflrkl*ihyy*k*iksvh*lkllklqnlqkklvgvv*lvivqvklmiislli
l*lvlvlvk*nlvhlvdlkdyqniid**klkknlknfidqmvih

Frame C:
yyf*yfnnynfkk*vlnqlklekfwiveviqh*klkygqvkecfqpkyqvehqlvfmkhl
n*emvikvvildmvf*mqllm*ii*yhqh*kv*eliikkq*mik*lnwmvqrinqnlgpm
qslvyqwqwqeqplllkvcpctvtfhnwleivifvyqyhvlmllmvenmqvidyhfkslc
*yplvhqnlk---

---tkfdft*rsinsvsgcyqsfglsrcy*nwy*fccfrileskdfki*ygfqeyriltf
ev*fk*w*ainv*ifrdfkkvsncil*rsiw*r*lgksw*nyscnw**nsnhw**ftlyk
srkn*ksnf*esckfiiienksnrytn*ny*scktckrswlglfs*ssfr*n**sfhc*s
cswswyw*nkiwctl*i*kiiki**inen*rrt*kts*ikw*fi

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHD848 (CHD848Q) /CSM/CH/CHD8-B/CHD848Q.Seq.d/ 2341 0.0
CHB680 (CHB680Q) /CSM/CH/CHB6-D/CHB680Q.Seq.d/ 1271 0.0
CFC343 (CFC343Q) /CSM/CF/CFC3-B/CFC343Q.Seq.d/ 1271 0.0
CFJ407 (CFJ407Q) /CSM/CF/CFJ4-A/CFJ407Q.Seq.d/ 1267 0.0
CFG491 (CFG491Q) /CSM/CF/CFG4-D/CFG491Q.Seq.d/ 1267 0.0
CHC316 (CHC316Q) /CSM/CH/CHC3-A/CHC316Q.Seq.d/ 1259 0.0
CFE810 (CFE810Q) /CSM/CF/CFE8-A/CFE810Q.Seq.d/ 1255 0.0
AFO218 (AFO218Q) /CSM/AF/AFO2-A/AFO218Q.Seq.d/ 1241 0.0
SFJ731 (SFJ731Q) /CSM/SF/SFJ7-B/SFJ731Q.Seq.d/ 1221 0.0
AFB731 (AFB731Q) /CSM/AF/AFB7-B/AFB731Q.Seq.d/ 1221 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U09736|U09736.1 Entamoeba histolytica HM1:IMSS enolase (enl-1) mRNA, complete cds. 56 1e-26 5
BD183626|BD183626.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium. 58 4e-16 5
BD183625|BD183625.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium. 58 4e-16 5
U00152|U00152.1 Plasmodium falciparum enolase gene complete cds. 58 4e-16 5
AB026051|AB026051.1 Plasmodium falciparum mRNA for enolase, complete cds. 58 4e-16 5
BM162118|BM162118.1 EST564641 PyBS Plasmodium yoelii yoelii cDNA clone PYCKN41 5' end, mRNA sequence. 62 1e-15 3
BM165201|BM165201.1 EST567724 PyBS Plasmodium yoelii yoelii cDNA clone PYCMI87 5' end, mRNA sequence. 62 1e-15 3
Y17298|Y17298.1 Cunninghamella elegans mRNA for enolase. 58 4e-15 4
L23324|L23324.1 Schistosoma japonicum enolase mRNA, complete cds. 72 2e-14 4
AE006265|AE006265.1 Lactococcus lactis subsp. lactis IL1403 section 27 of 218 of the complete genome. 44 2e-14 8
dna update 2004. 9.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9U615) RecName: Full=Enolase; EC=4.2.1.11; AltName: F... 431 e-119
DQ497988_1(DQ497988|pid:none) Polypterus senegalus enolase B mRN... 429 e-118
(Q27727) RecName: Full=Enolase; EC=4.2.1.11; AltName: F... 427 e-118
AK290525_1(AK290525|pid:none) Homo sapiens cDNA FLJ77877 complet... 426 e-118
(P09104) RecName: Full=Gamma-enolase; EC=4.2.1.11; AltN... 426 e-118
(P17183) RecName: Full=Gamma-enolase; EC=4.2.1.11; AltN... 426 e-118
AM910990_161(AM910990|pid:none) Plasmodium knowlesi strain H chr... 426 e-117
BC054169_1(BC054169|pid:none) Xenopus laevis enolase 1, alpha, m... 426 e-117
AF363629_1(AF363629|pid:none) Trichinella spiralis enolase (Eno)... 426 e-117
(P07323) RecName: Full=Gamma-enolase; EC=4.2.1.11; AltN... 426 e-117
protein update 2009. 3.30
PSORT

psg: 0.56 gvh: 0.44 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CHD848 is nuc

5' end seq. ID CHD848F
5' end seq.
>CHD848F.Seq
ATTATTATTTTTAATATTTTAATAATTATAATTTTAAAAAATGAGTATTGAATCAATTAA
AGCTAGAGAAATTTTGGATAGTAGAGGTAATCCAACATTAGAAGTTGAAGTATGGACAAG
TGAAGGAATGTTTTCAGCCAAAGTACCAAGTGGAGCATCAACTGGTATTCATGAAGCATT
TGAATTAAGAGATGGTGATAAAAGTCGTTATTTTGGATATGGTGTTTTGAATGCAATTGT
TAATGTAAATAATTTAATATCACCAACATTGAAAGGTATGAGAGTTGATAATCAAAAAGC
AATAGATGATAAAATGATTGAATTGGATGGTACAAAGAATAAATCAAAACTTGGGTCCAA
TGCAATCGTTGGTGTATCAATGGCAGTGGCAAGAGCAGCCGCTTCTATTAAAGGTGTGCC
CTTGTACCGTTACATTTCACAATTGGCTGGAAATAGTAATATTCGTTTACCAGTACCATG
TTTTAATGTTATTAATGGTGGAAAACATGCAGGTAATAGACTACCATTTCAAGAGTTTAT
GCTAGTACCCATTGGTGCACCAAAATTTAAAGANNNNNNNNNN
Length of 5' end seq. 583
3' end seq. ID CHD848Z
3' end seq.
>CHD848Z.Seq
NNNNNNNNNNGCACCAAATTTGACTTCACCTGAAGAAGCATTAACTCTGTTAGTGGATGC
TATCAATCATTCGGGCTATCAAGATGTTATTAAAATTGGTATTGATTCTGCTGCTTCAGA
ATTTTGGAATCCAAAGACTTCAAAATATGATATGGATTTCAAGAATATAGGATCCTCACA
TTTGAAGTCTAGTTTAAATAGTGGTGAGCAATTAATGTCTAGATATTTAGAGATTTTAAA
AAAGTATCCAATTGCATTCTTTGAAGATCCATTTGGTGAAGATGATTGGGAAAATCATGG
TAAAATTACAGCTGCAATTGGTAATAAAATTCAAATCATTGGTGATGATTTACTTTGTAC
AAATCCAGAAAGAATTAAAAAAGCAATTTCTGAGAAAGCTGTAAATTCATTATTATTGAA
AATAAATCAAATCGGTACACTAACTGAAACTATTGAAGCTGCAAAACTTGCAAAAGAAGC
TGGTTGGGGTTGTTTAGTTAGTCATCGTTCAGGTGAAACTGATGATCATTTCATTGCTGA
TCTTGTAGTTGGTCTTGGTACTGGTGAAATAAAATCTGGTGCACCTTGTAGATTTGAAAG
ATTATCAAAATATAATAGATTAATGAAAATTGAAGAAGAACTTGAAAAACTTCATAGATC
AAATGGTAATTCATT
Length of 3' end seq. 675
Connected seq. ID CHD848P
Connected seq.
>CHD848P.Seq
ATTATTATTTTTAATATTTTAATAATTATAATTTTAAAAAATGAGTATTGAATCAATTAA
AGCTAGAGAAATTTTGGATAGTAGAGGTAATCCAACATTAGAAGTTGAAGTATGGACAAG
TGAAGGAATGTTTTCAGCCAAAGTACCAAGTGGAGCATCAACTGGTATTCATGAAGCATT
TGAATTAAGAGATGGTGATAAAAGTCGTTATTTTGGATATGGTGTTTTGAATGCAATTGT
TAATGTAAATAATTTAATATCACCAACATTGAAAGGTATGAGAGTTGATAATCAAAAAGC
AATAGATGATAAAATGATTGAATTGGATGGTACAAAGAATAAATCAAAACTTGGGTCCAA
TGCAATCGTTGGTGTATCAATGGCAGTGGCAAGAGCAGCCGCTTCTATTAAAGGTGTGCC
CTTGTACCGTTACATTTCACAATTGGCTGGAAATAGTAATATTCGTTTACCAGTACCATG
TTTTAATGTTATTAATGGTGGAAAACATGCAGGTAATAGACTACCATTTCAAGAGTTTAT
GCTAGTACCCATTGGTGCACCAAAATTTAAAGA----------GCACCAAATTTGACTTC
ACCTGAAGAAGCATTAACTCTGTTAGTGGATGCTATCAATCATTCGGGCTATCAAGATGT
TATTAAAATTGGTATTGATTCTGCTGCTTCAGAATTTTGGAATCCAAAGACTTCAAAATA
TGATATGGATTTCAAGAATATAGGATCCTCACATTTGAAGTCTAGTTTAAATAGTGGTGA
GCAATTAATGTCTAGATATTTAGAGATTTTAAAAAAGTATCCAATTGCATTCTTTGAAGA
TCCATTTGGTGAAGATGATTGGGAAAATCATGGTAAAATTACAGCTGCAATTGGTAATAA
AATTCAAATCATTGGTGATGATTTACTTTGTACAAATCCAGAAAGAATTAAAAAAGCAAT
TTCTGAGAAAGCTGTAAATTCATTATTATTGAAAATAAATCAAATCGGTACACTAACTGA
AACTATTGAAGCTGCAAAACTTGCAAAAGAAGCTGGTTGGGGTTGTTTAGTTAGTCATCG
TTCAGGTGAAACTGATGATCATTTCATTGCTGATCTTGTAGTTGGTCTTGGTACTGGTGA
AATAAAATCTGGTGCACCTTGTAGATTTGAAAGATTATCAAAATATAATAGATTAATGAA
AATTGAAGAAGAACTTGAAAAACTTCATAGATCAAATGGTAATTCATT
Length of connected seq. 1238
Full length Seq ID -
Full length Seq. -
Length of full length seq. -