CHD760
Library CH
(Link to library)
Clone ID CHD760
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16300-1
Original site URL
Representative seq. ID CHD760P
(Link to Original site)
Representative DNA sequence
>CHD760 (CHD760Q) /CSM/CH/CHD7-C/CHD760Q.Seq.d/
ATTATTTTTATTATAGATAATAGAATACAGCCTTCATATATTATAATATAGCGAAAAAAT
GAATCATTCAAGTAAAAAAAAATAAAAATCGTATTCTTAGAAATAAAGCTAGAATATATT
GNGATGTAAATCTTCACAAACCAAAGGAATATTGGAACTATGAAGCTTTAAATGTTAAAT
GGGAAACTCAAGATGATTATGAAATTATTAGAAAAATAGGTAGAGGTAAATATTCAGAAG
TATTTGAAGGTGCCAACATTAAAAACAATGAAAAATGTGTAATTAAAGTATTGAAACCAG
TTAAAAAGAAGAAGATTAAGAGAGAGATTAAGATTCTTCAAAATCTTTGNGGNGGACCAA
ATATCATTACATTATATGATGTCGTTAGAGATCCACAATCAAAGACACCAAGCTTAATTT
TTGAGTATATCAACAATACCGATTTCAAACATCTCTCACCAACACTCACCGATTTCGATG
TAAGATATTACATTAGAGAATTATTACACGCATTGGATTTTTGTCATTCAAACGGTATCA
TGCATAGAGATGTTAAACCATCAAACGTTATGATTGATCATCAAAAAAGAAAATTGTATC
TCATCGATTGGXXXXXXXXXXTTTTATCATCCAAATCAAGATTACAACGTTAGAGTTGCT
TCTCGTCCATACAAAGGACCAGAATTATTGGTTGATATGGAAGATTATGATTATAGTCTT
GATATGTGGAGTCTTGGTTGTATGTTTGCTGGTATGCTCTTCCAAAAAGATCCATTCTTC
CATGGTCATGATAATATTGATCAATTAGTAAAGATTGTAAAGATTTTAGGTACAGAAGAA
TTTTATGCCTATTTAGATAAATATGGTATCGTTGTTGATCATACTATCCTTAGTATCATT
GGAAAACATCCAAAGAAACCATGGTCAAGATTTATTACCAAAGAAAACCAACATCTTGCA
GTACCAGAGGCCATTGACTTTTTGGAAAAATTATTACGTTATGACCCAGCCGAAAGATTA
ACTACAAGAGAAGCTATGGAACACCCATACTTTAAACCATTATCTCATTAAATAATTATA
TAATCATAATTAAAATAATAACAACTGATATTAATTTCCCAACAAGAAATTAAAATCAAA
AATCAAAATCAAAATCAATACCAATACCAATACCAAAATCAAAATCAAAATCAAAATCAA
AATCAAAATCAAAATCAAAACTAAAGACTAAAACAAAGACCAAGANCAAAAACAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
yfyyr**ntafiyyniakk*IIQVKKNKNRILRNKARIYXDVNLHKPKEYWNYEALNVKW
ETQDDYEIIRKIGRGKYSEVFEGANIKNNEKCVIKVLKPVKKKKIKREIKILQNLXGGPN
IITLYDVVRDPQSKTPSLIFEYINNTDFKHLSPTLTDFDVRYYIRELLHALDFCHSNGIM
HRDVKPSNVMIDHQKRKLYLIDW---

---FYHPNQDYNVRVASRPYKGPELLVDMEDYDYSLDMWSLGCMFAGMLFQKDPFFHGHD
NIDQLVKIVKILGTEEFYAYLDKYGIVVDHTILSIIGKHPKKPWSRFITKENQHLAVPEA
IDFLEKLLRYDPAERLTTREAMEHPYFKPLSH*iii*s*lk**qlilisqqeikiknqnq
nqyqyqyqnqnqnqnqnqnqnqn*rlkqrprxktk


Translated Amino Acid sequence (All Frames)
Frame A:
iifiidnriqpsyiii*rknesfk*kkikivfleikleyixm*iftnqrnigtmkl*mln
gklkmimkllek*vevniqkylkvptlktmknv*lky*nqlkrrrlrerlrffkifxxdq
islhymmsleihnqrhqa*flsistipisnishqhspism*ditlenyythwifviqtvs
ciemlnhqtl*liikkencissi---

---FYHPNQDYNVRVASRPYKGPELLVDMEDYDYSLDMWSLGCMFAGMLFQKDPFFHGHD
NIDQLVKIVKILGTEEFYAYLDKYGIVVDHTILSIIGKHPKKPWSRFITKENQHLAVPEA
IDFLEKLLRYDPAERLTTREAMEHPYFKPLSH*iii*s*lk**qlilisqqeikiknqnq
nqyqyqyqnqnqnqnqnqnqnqn*rlkqrprxktk

Frame B:
lfll*iieyslhil*ysekmnhsskkk*ksys*k*s*nilxckssqtkgilel*sfkc*m
gnsr*l*ny*knr*r*ifrsi*rcqh*kq*kmcn*siets*keed*erd*dsskslxxtk
yhyii*cr*rstikdtklnf*vyqqyrfqtsltnthrfrckilh*riitrigflsfkryh
a*rc*tikryd*sskkkivshrl---

---fiiqikittlelllvhtkdqnywliwkimiivlicgvlvvcllvcsskkihssmvmi
ilin**rl*rf*vqknfmpi*inmvslliilslvsleniqrnhgqdllpkktnilqyqrp
ltfwknyyvmtqpkd*lqeklwnthtlnhylik*lynhn*nnnn*y*fpnkklkskikik
intntntkikikikikikikiktkd*nkdqxqkq

Frame C:
yfyyr**ntafiyyniakk*IIQVKKNKNRILRNKARIYXDVNLHKPKEYWNYEALNVKW
ETQDDYEIIRKIGRGKYSEVFEGANIKNNEKCVIKVLKPVKKKKIKREIKILQNLXGGPN
IITLYDVVRDPQSKTPSLIFEYINNTDFKHLSPTLTDFDVRYYIRELLHALDFCHSNGIM
HRDVKPSNVMIDHQKRKLYLIDW---

---lssksrlqr*scfssiqrtriig*ygrl*l*s*yveswlyvcwyalpkrsilpws**
y*siskdckdfryrrilclfr*iwyrc*syyp*yhwktsketmvkiyyqrkptscstrgh
*lfgkiitl*psrkinykrsygtpil*tiislnnyiiiikiittdinfptrn*nqksksk
sipipipksksksksksksksklktktktkxknk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHD760 (CHD760Q) /CSM/CH/CHD7-C/CHD760Q.Seq.d/ 1980 0.0
SFF312 (SFF312Q) /CSM/SF/SFF3-A/SFF312Q.Seq.d/ 1019 0.0
SFF289 (SFF289Q) /CSM/SF/SFF2-D/SFF289Q.Seq.d/ 1019 0.0
SFB548 (SFB548Q) /CSM/SF/SFB5-B/SFB548Q.Seq.d/ 1019 0.0
CFF548 (CFF548Q) /CSM/CF/CFF5-B/CFF548Q.Seq.d/ 1019 0.0
SHC634 (SHC634Q) /CSM/SH/SHC6-B/SHC634Q.Seq.d/ 1015 0.0
SFC281 (SFC281Q) /CSM/SF/SFC2-D/SFC281Q.Seq.d/ 1015 0.0
VFA127 (VFA127Q) /CSM/VF/VFA1-B/VFA127Q.Seq.d/ 1013 0.0
SHL221 (SHL221Q) /CSM/SH/SHL2-A/SHL221Q.Seq.d/ 1013 0.0
SHI863 (SHI863Q) /CSM/SH/SHI8-C/SHI863Q.Seq.d/ 1013 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L05535|L05535.1 Dictyostelium discoideum casein kinase II alpha subunit mRNA, complete cds. 1019 0.0 3
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 835 0.0 11
AJ795389|AJ795389.1 Antirrhinum majus EST, clone 018_3_07_o24. 82 7e-37 6
CV006736|CV006736.1 atr01-32ms4-b02 Atr01 Amborella trichopoda cDNA clone atr01-32ms4-b02 5', mRNA sequence. 78 4e-33 5
AJ795343|AJ795343.1 Antirrhinum majus EST, clone 018_3_07_m24. 82 5e-31 4
CV033150|CV033150.1 RTNACL1_20_E04.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_20_E04_A029 5', mRNA sequence. 74 7e-22 3
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence. 62 1e-21 20
CO638564|CO638564.1 USDA-FP_107301 Adult Glassy-winged Sharpshooter Homalodisca coagulata cDNA clone WHHC029_B03 5', mRNA sequence. 70 3e-21 4
CV032345|CV032345.1 RTNACL1_7_B05.g2_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_7_B05_A029 5', mRNA sequence. 74 2e-20 2
CO361719|CO361719.1 NDL2_6_D03.g1_A029 Needles control 2 Pinus taeda cDNA clone NDL2_6_D03_A029 5', mRNA sequence. 74 2e-20 2
dna update 2004. 9.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB036786_1(AB036786|pid:none) Oryza sativa Indica Group Kasalath... 239 e-123
AP005244_27(AP005244|pid:none) Oryza sativa Japonica Group genom... 239 e-123
EU284834_1(EU284834|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 237 e-122
AM440768_1(AM440768|pid:none) Vitis vinifera contig VV78X184096.... 234 e-122
AC004401_12(AC004401|pid:none) Arabidopsis thaliana chromosome 2... 233 e-122
AF370308_1(AF370308|pid:none) Arabidopsis thaliana putative case... 238 e-122
Y11526_1(Y11526|pid:none) Z.mays mRNA for casein kinase II alpha... 237 e-121
CS402615_1(CS402615|pid:none) Sequence 5 from Patent WO2006020717. 236 e-121
AJ420786_1(AJ420786|pid:none) Sinapis alba mRNA for chloroplast ... 231 e-121
CS402618_1(CS402618|pid:none) Sequence 8 from Patent WO2006020717. 233 e-121
protein update 2009. 3.30
PSORT

psg: 0.47 gvh: 0.07 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.04
nuc: 0.10 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: cytoskeletal

>> prediction for CHD760 is nuc

5' end seq. ID CHD760F
5' end seq.
>CHD760F.Seq
ATTATTTTTATTATAGATAATAGAATACAGCCTTCATATATTATAATATAGCGAAAAAAT
GAATCATTCAAGTAAAAAAAAATAAAAATCGTATTCTTAGAAATAAAGCTAGAATATATT
GNGATGTAAATCTTCACAAACCAAAGGAATATTGGAACTATGAAGCTTTAAATGTTAAAT
GGGAAACTCAAGATGATTATGAAATTATTAGAAAAATAGGTAGAGGTAAATATTCAGAAG
TATTTGAAGGTGCCAACATTAAAAACAATGAAAAATGTGTAATTAAAGTATTGAAACCAG
TTAAAAAGAAGAAGATTAAGAGAGAGATTAAGATTCTTCAAAATCTTTGNGGNGGACCAA
ATATCATTACATTATATGATGTCGTTAGAGATCCACAATCAAAGACACCAAGCTTAATTT
TTGAGTATATCAACAATACCGATTTCAAACATCTCTCACCAACACTCACCGATTTCGATG
TAAGATATTACATTAGAGAATTATTACACGCATTGGATTTTTGTCATTCAAACGGTATCA
TGCATAGAGATGTTAAACCATCAAACGTTATGATTGATCATCAAAAAAGAAAATTGTATC
TCATCGATTGGNNNNNNNNNN
Length of 5' end seq. 621
3' end seq. ID CHD760Z
3' end seq.
>CHD760Z.Seq
NNNNNNNNNNTTTTATCATCCAAATCAAGATTACAACGTTAGAGTTGCTTCTCGTCCATA
CAAAGGACCAGAATTATTGGTTGATATGGAAGATTATGATTATAGTCTTGATATGTGGAG
TCTTGGTTGTATGTTTGCTGGTATGCTCTTCCAAAAAGATCCATTCTTCCATGGTCATGA
TAATATTGATCAATTAGTAAAGATTGTAAAGATTTTAGGTACAGAAGAATTTTATGCCTA
TTTAGATAAATATGGTATCGTTGTTGATCATACTATCCTTAGTATCATTGGAAAACATCC
AAAGAAACCATGGTCAAGATTTATTACCAAAGAAAACCAACATCTTGCAGTACCAGAGGC
CATTGACTTTTTGGAAAAATTATTACGTTATGACCCAGCCGAAAGATTAACTACAAGAGA
AGCTATGGAACACCCATACTTTAAACCATTATCTCATTAAATAATTATATAATCATAATT
AAAATAATAACAACTGATATTAATTTCCCAACAAGAAATTAAAATCAAAAATCAAAATCA
AAATCAATACCAATACCAATACCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCA
AAATCAAAACTAAAGACTAAAACAAAGACCAAGANCAAAAACAAAA
Length of 3' end seq. 646
Connected seq. ID CHD760P
Connected seq.
>CHD760P.Seq
ATTATTTTTATTATAGATAATAGAATACAGCCTTCATATATTATAATATAGCGAAAAAAT
GAATCATTCAAGTAAAAAAAAATAAAAATCGTATTCTTAGAAATAAAGCTAGAATATATT
GNGATGTAAATCTTCACAAACCAAAGGAATATTGGAACTATGAAGCTTTAAATGTTAAAT
GGGAAACTCAAGATGATTATGAAATTATTAGAAAAATAGGTAGAGGTAAATATTCAGAAG
TATTTGAAGGTGCCAACATTAAAAACAATGAAAAATGTGTAATTAAAGTATTGAAACCAG
TTAAAAAGAAGAAGATTAAGAGAGAGATTAAGATTCTTCAAAATCTTTGNGGNGGACCAA
ATATCATTACATTATATGATGTCGTTAGAGATCCACAATCAAAGACACCAAGCTTAATTT
TTGAGTATATCAACAATACCGATTTCAAACATCTCTCACCAACACTCACCGATTTCGATG
TAAGATATTACATTAGAGAATTATTACACGCATTGGATTTTTGTCATTCAAACGGTATCA
TGCATAGAGATGTTAAACCATCAAACGTTATGATTGATCATCAAAAAAGAAAATTGTATC
TCATCGATTGG----------TTTTATCATCCAAATCAAGATTACAACGTTAGAGTTGCT
TCTCGTCCATACAAAGGACCAGAATTATTGGTTGATATGGAAGATTATGATTATAGTCTT
GATATGTGGAGTCTTGGTTGTATGTTTGCTGGTATGCTCTTCCAAAAAGATCCATTCTTC
CATGGTCATGATAATATTGATCAATTAGTAAAGATTGTAAAGATTTTAGGTACAGAAGAA
TTTTATGCCTATTTAGATAAATATGGTATCGTTGTTGATCATACTATCCTTAGTATCATT
GGAAAACATCCAAAGAAACCATGGTCAAGATTTATTACCAAAGAAAACCAACATCTTGCA
GTACCAGAGGCCATTGACTTTTTGGAAAAATTATTACGTTATGACCCAGCCGAAAGATTA
ACTACAAGAGAAGCTATGGAACACCCATACTTTAAACCATTATCTCATTAAATAATTATA
TAATCATAATTAAAATAATAACAACTGATATTAATTTCCCAACAAGAAATTAAAATCAAA
AATCAAAATCAAAATCAATACCAATACCAATACCAAAATCAAAATCAAAATCAAAATCAA
AATCAAAATCAAAATCAAAACTAAAGACTAAAACAAAGACCAAGANCAAAAACAAAA
Length of connected seq. 1247
Full length Seq ID -
Full length Seq. -
Length of full length seq. -