>CHD702 (CHD702Q) /CSM/CH/CHD7-A/CHD702Q.Seq.d/
XXXXXXXXXXTTAACAAACCAATTGAAAATATTGTTTTNGATGAANAAAANAAAATTATT
AAAGTTACATTTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATAT
TTCCCAAATAAAGTTCAAAANAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGT
CCAATTCCATNTGNTGATAANAAATTTGAATCACTCCAAATCATTATCCCNCAAAAACAA
GTTAAACGTCAATCANATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTNTGTCCA
AAGGGTAAANACATTGCCATCGTTTCAGCCNCTGTTGAAACCAATGAACCANAGAAAGAA
TTAGCNCCAGCTTACGCTTTATTAGGNCCNATTCAANANAAATTTGNCTANATTTCTGAT
TTCATTGAACCNATTGCTGATGGNACNGCCGACAATGNTTTCATCTCAAAATCANATGAT
GT

---NKPIENIVXDEXXKIIKVTFEGETVTCDKIVCDPSYFPNKVQXKGKIIRSICILNGP
IPXXDXKFESLQIIIPQKQVKRQSXMYVGVMSSAHCVCPKGKXIAIVSAXVETNEPXKEL
APAYALLGPIQXKFXXISDFIEPIADGTADNXFISKSXD

Frame A:
---*qtn*kycfx*xkxny*syi*r*ncnm**ncl*siifpk*sskxr*nysfnlyfews
nsxx**xi*itpnhypxkts*tsixyvrwcyvirslcxskg*xhchrfsxc*nq*txeri
sxslrfirxxsxxixlxf*fh*txc*wxxrqxfhlkix*c


Frame B:
---NKPIENIVXDEXXKIIKVTFEGETVTCDKIVCDPSYFPNKVQXKGKIIRSICILNGP
IPXXDXKFESLQIIIPQKQVKRQSXMYVGVMSSAHCVCPKGKXIAIVSAXVETNEPXKEL
APAYALLGPIQXKFXXISDFIEPIADGTADNXFISKSXD


Frame C:
---tnqlkilfxmxkxkllklhlkvkl*hviklfvihhisqikfkxkvklfvqfvf*mvq
fhxxixnlnhskslsxknklnvnxictlvlchplivxvqrvxtlpsfqpllkpmnxrkn*
xqltly*xxfxxnlxxflislnxllmxxptmxssqnxmm

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHD702 (CHD702Q) /CSM/CH/CHD7-A/CHD702Q.Seq.d/                        739   0.0
VFJ639 (VFJ639Q) /CSM/VF/VFJ6-B/VFJ639Q.Seq.d/                        722   0.0
SFL394 (SFL394Q) /CSM/SF/SFL3-D/SFL394Q.Seq.d/                        722   0.0
SFL120 (SFL120Q) /CSM/SF/SFL1-A/SFL120Q.Seq.d/                        722   0.0
SFJ795 (SFJ795Q) /CSM/SF/SFJ7-D/SFJ795Q.Seq.d/                        722   0.0
SFJ449 (SFJ449Q) /CSM/SF/SFJ4-C/SFJ449Q.Seq.d/                        722   0.0
SFI510 (SFI510Q) /CSM/SF/SFI5-A/SFI510Q.Seq.d/                        722   0.0
SFE141 (SFE141Q) /CSM/SF/SFE1-B/SFE141Q.Seq.d/                        722   0.0
SFD673 (SFD673Q) /CSM/SF/SFD6-D/SFD673Q.Seq.d/                        722   0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/                        722   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BE800797|BE800797.1 sq98c12.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID:INHIBITOR. ;, mRNA sequence.    54   0.002  1
AW397479|AW397479.1 sg79d05.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-2626 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    54   0.002  1
BI315670|BI315670.1 saf75f12.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-2184 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    54   0.002  1
AI437629|AI437629.1 sa37e09.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1505 5' similar to TR:O24653 O24653 GDI2. ;, mRNA sequence.    54   0.002  1
BU964562|BU964562.1 sas99a12.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-12311 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    54   0.002  1
CC054858|CC054858.1 SALK_080175.55.00.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_080175.55.00.x, DNA sequence.    32   0.44   3
AW306227|AW306227.1 se47g11.y1 Gm-c1017 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1017-2109 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    46   0.45   1
CF917552|CF917552.1 Bflor498.000802 Amphioxus 5-6 hrs cDNA library (Name convention: BFLG or MPMGp498) Branchiostoma floridae cDNA clone MPMGp531P19120;BFLG_120P19 5', mRNA sequence.    34   1.4    3
BI382414|BI382414.1 BFLG2_000591 Amphioxus 5-6 hrs cDNA library (Name convention: BFLG or MPMGp498) Branchiostoma floridae cDNA clone MPMGp498P19120 5', mRNA sequence.    34   1.4    3
BU080552|BU080552.1 saq26a11.y1 Gm-c1045 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1045-5782 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    44   1.8    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF676817_1(EF676817|pid:none) Picea sitchensis clone WS02753_I09...   151   6e-36
EF085049_1(EF085049|pid:none) Picea sitchensis clone WS0297_P09 ...   151   6e-36
BT071197_1(BT071197|pid:none) Picea sitchensis clone WS0279_A10 ...   147   1e-34
AJ401079_1(AJ401079|pid:none) Lycopersicon esculentum partial mR...   144   8e-34
AM710298_1(AM710298|pid:none) Lycopersicon esculentum GDI1 gene ...   144   8e-34
AY086920_1(AY086920|pid:none) Arabidopsis thaliana clone 29536 m...   144   1e-33
AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ...   144   1e-33
AK316933_1(AK316933|pid:none) Arabidopsis thaliana AT2G44100 mRN...   144   1e-33
AC004005_24(AC004005|pid:none) Arabidopsis thaliana chromosome 2...   144   1e-33
(Q10305) RecName: Full=Probable secretory pathway GDP dissociati...   143   2e-33

 psg: 0.75  gvh: 0.37  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CHD702 is nuc

>CHD702Z.Seq
NNNNNNNNNNTTAACAAACCAATTGAAAATATTGTTTTNGATGAANAAAANAAAATTATT
AAAGTTACATTTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATAT
TTCCCAAATAAAGTTCAAAANAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGT
CCAATTCCATNTGNTGATAANAAATTTGAATCACTCCAAATCATTATCCCNCAAAAACAA
GTTAAACGTCAATCANATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTNTGTCCA
AAGGGTAAANACATTGCCATCGTTTCAGCCNCTGTTGAAACCAATGAACCANAGAAAGAA
TTAGCNCCAGCTTACGCTTTATTAGGNCCNATTCAANANAAATTTGNCTANATTTCTGAT
TTCATTGAACCNATTGCTGATGGNACNGCCGACAATGNTTTCATCTCAAAATCANATGAT
GT