CHD673
Library CH
(Link to library)
Clone ID CHD673
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16367-1
Original site URL
Representative seq. ID CHD673P
(Link to Original site)
Representative DNA sequence
>CHD673 (CHD673Q) /CSM/CH/CHD6-D/CHD673Q.Seq.d/
AATTAGGACCAGGTAAAAATGACAGGAATTCGAAGCGCACTACCAAATCCAGCCTCATTG
GTTGAAAGTTCAACTCACAGATTTCTCATTTTCGATGCACCAAATGATGATAATCTACCT
TTATATATAAATGAATTAAAAAAATATAACGTCTCTCATTTAGTTAGAGCATGTGATCCA
ACATATTCAACTGAACCACTTCAAGCAATTGGTATCCAAGTGCATGATATGCCATTTGCA
GATGGTGGTTCTCCTCCTGATGCGGTTGTAAATAATTGGATTAAAATACTTGGGGAATCT
TACAAAAAAGATTCAAAAGAAACTATTGGTATTCATTGTGTTGCAGGACTTGGTAGAGCA
CCAGTTTTAGTGGCAATTGCATTGATTGAGGGTGGAATGAATCCACTTCAAGCAGTTGAA
TACATTCGTGAAAGAAGAAGAGGTTCAATTAATATTAAACAAATTCAATATCTTAAAAAT
TATAAAAGCAAAAAGAAATCTTCATGCAGAATCATGTAAACGAATCTTTTATTTTATATA
TAATTTGAATGTTGAAAATAAATGCAATTTAATTTAAATGTGGAAAAAAAAXXXXXXXXX
XAATTAGGACCAGGTAAAAATGACAGGAATTCGAAGCGCACTACCAAATCCAGCCTCATT
GGTTGAAAGTTCAACTCACAGATTTCTCATTTTCGATGCACCAAATGATGATAATCTACC
TTTATATATAAATGAATTAAAAAAATATAACGTCTCTCATTTAGTTAGAGCATGTGATCC
AACATATTCAACTGAACCACTTCAAGCAATTGGTATCCAAGTGCATGATATGCCATTTGC
AGATGGTGGTTCTCCTCCTGATGCGGTTGTAAATAATTGGATTAAAATACTTGGGGAATC
TTACAAAAAAGATTCAAAAGAAACTATTGGTATTCATTGTGTTGCAGGACTTGGTAGAGC
ACCAGTTTTAGTGGCAATTGCATTGATTGAGGGTGGAATGAATCCACTTCAAGCAGTTGA
ATACATTCGTGAAAGAAGAAGAGGTTCAATTAATATTAAACAAATTCAATATCTTAAAAA
TTATAAAAGCAAAAAGAAATCTTCATGCAGAATCATGTAAACGAATCTTTTATTCTTATA
TATAATT
sequence update 2002.10.25
Translated Amino Acid sequence
n*dqvkmtgirsalpnpaslvessthrflifdapnddnlplyinelkkynvshlvracdp
tysteplqaigiqvhdmpfadggsppdavvnnwikilgesykkdsketigihcvaglgra
pvlvaialieggmnplqaveyirerrrgsinikqiqylknykskkksscrim*tnllfyi
*fec*k*MQFNLNVEKK---

---LGPGKNDRNSKRTTKSSLIG*kfnsqishfrctk***stfiyk*ikki*rlsfs*sm
*snifn*ttssnwypsa*yaicrwwfss*cgck*ld*ntwgilqkrfkrnywyslccrtw
*stsfsgncid*gwnestsss*ihs*kkkrfn*y*tnsis*kl*kqkeifmqnhvnesfi
liyn


Translated Amino Acid sequence (All Frames)
Frame A:
n*dqvkmtgirsalpnpaslvessthrflifdapnddnlplyinelkkynvshlvracdp
tysteplqaigiqvhdmpfadggsppdavvnnwikilgesykkdsketigihcvaglgra
pvlvaialieggmnplqaveyirerrrgsinikqiqylknykskkksscrim*tnllfyi
*fec*k*MQFNLNVEKK---

---n*dqvkmtgirsalpnpaslvessthrflifdapnddnlplyinelkkynvshlvra
cdptysteplqaigiqvhdmpfadggsppdavvnnwikilgesykkdsketigihcvagl
grapvlvaialieggmnplqaveyirerrrgsinikqiqylknykskkksscrim*tnll
flyii

Frame B:
irtr*k*qefeahyqiqphwlkvqltdfsfsmhqmmiiylyi*mn*knitsli*lehviq
hiqlnhfkqlvskcmichlqmvvlllmrl*iiglkylgnltkkiqkkllvfivlqdlveh
qf*wqlh*lrve*ihfkqlntfvkeeevqlilnkfnilkiikakrnlhaesckrifyfiy
nlnvenkcnli*mwkk---

---irtr*k*qefeahyqiqphwlkvqltdfsfsmhqmmiiylyi*mn*knitsli*leh
viqhiqlnhfkqlvskcmichlqmvvlllmrl*iiglkylgnltkkiqkkllvfivlqdl
vehqf*wqlh*lrve*ihfkqlntfvkeeevqlilnkfnilkiikakrnlhaesckrify
syi*

Frame C:
lgpgkndrnskrttksslig*kfnsqishfrctk***stfiyk*ikki*rlsfs*sm*sn
ifn*ttssnwypsa*yaicrwwfss*cgck*ld*ntwgilqkrfkrnywyslccrtw*st
sfsgncid*gwnestsss*ihs*kkkrfn*y*tnsis*kl*kqkeifmqnhvnesfilyi
i*mlkinai*fkcgkk---

---LGPGKNDRNSKRTTKSSLIG*kfnsqishfrctk***stfiyk*ikki*rlsfs*sm
*snifn*ttssnwypsa*yaicrwwfss*cgck*ld*ntwgilqkrfkrnywyslccrtw
*stsfsgncid*gwnestsss*ihs*kkkrfn*y*tnsis*kl*kqkeifmqnhvnesfi
liyn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHD673 (CHD673Q) /CSM/CH/CHD6-D/CHD673Q.Seq.d/ 1114 0.0
AFC712 (AFC712Q) /CSM/AF/AFC7-A/AFC712Q.Seq.d/ 1047 0.0
SSK373 (SSK373Q) /CSM/SS/SSK3-D/SSK373Q.Seq.d/ 872 0.0
SSD670 (SSD670Q) /CSM/SS/SSD6-C/SSD670Q.Seq.d/ 694 0.0
VSH680 (VSH680Q) /CSM/VS/VSH6-D/VSH680Q.Seq.d/ 42 0.019
VSD301 (VSD301Q) /CSM/VS/VSD3-A/VSD301Q.Seq.d/ 42 0.019
VSB278 (VSB278Q) /CSM/VS/VSB2-D/VSB278Q.Seq.d/ 42 0.019
VFN549 (VFN549Q) /CSM/VF/VFN5-C/VFN549Q.Seq.d/ 42 0.019
VFG810 (VFG810Q) /CSM/VF/VFG8-A/VFG810Q.Seq.d/ 42 0.019
VFD144 (VFD144Q) /CSM/VF/VFD1-B/VFD144Q.Seq.d/ 42 0.019

own update 2002.11.21
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 1e-08 25
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 34 1e-07 18
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence. 36 2e-07 15
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 32 2e-06 15
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5. 34 4e-06 19
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 44 4e-06 20
AF298624|AF298624.2 Dictyostelium discoideum chromosome 2 repeat region. 34 6e-06 7
AJ667832|AJ667832.1 Sus scrofa EST, clone C0000042_B10. 52 6e-06 2
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 32 1e-05 18
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4. 36 2e-05 20
dna update 2004. 9.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54DU9) RecName: Full=Probable protein tyrosine phosphatase typ... 322 2e-86
AM055943_110(AM055943|pid:none) Toxoplasma gondii RH, genomic DN... 155 2e-36
AE014186_120(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 150 1e-34
AE014134_2766(AE014134|pid:none) Drosophila melanogaster chromos... 147 5e-34
CT005255_26(CT005255|pid:none) Leishmania major strain Friedlin,... 147 5e-34
AM910991_102(AM910991|pid:none) Plasmodium knowlesi strain H chr... 146 1e-33
AY461711_1(AY461711|pid:none) Trypanosoma cruzi CL Brener PRL-1 ... 144 7e-33
AF063401_1(AF063401|pid:none) Caenorhabditis elegans putative pr... 141 4e-32
AC117076_12(AC117076|pid:none) Dictyostelium discoideum chromoso... 141 5e-32
(Q9D658) RecName: Full=Protein tyrosine phosphatase type IVA 3; ... 140 6e-32
protein update 2009. 3.30
PSORT

psg: 0.44 gvh: 0.04 alm: 0.77 top: 0.53 tms: 0.00 mit: 0.12 mip: 0.00
nuc: 0.19 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: nuclear
20.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for CHD673 is nuc

5' end seq. ID CHD673F
5' end seq.
>CHD673F.Seq
AATTAGGACCAGGTAAAAATGACAGGAATTCGAAGCGCACTACCAAATCCAGCCTCATTG
GTTGAAAGTTCAACTCACAGATTTCTCATTTTCGATGCACCAAATGATGATAATCTACCT
TTATATATAAATGAATTAAAAAAATATAACGTCTCTCATTTAGTTAGAGCATGTGATCCA
ACATATTCAACTGAACCACTTCAAGCAATTGGTATCCAAGTGCATGATATGCCATTTGCA
GATGGTGGTTCTCCTCCTGATGCGGTTGTAAATAATTGGATTAAAATACTTGGGGAATCT
TACAAAAAAGATTCAAAAGAAACTATTGGTATTCATTGTGTTGCAGGACTTGGTAGAGCA
CCAGTTTTAGTGGCAATTGCATTGATTGAGGGTGGAATGAATCCACTTCAAGCAGTTGAA
TACATTCGTGAAAGAAGAAGAGGTTCAATTAATATTAAACAAATTCAATATCTTAAAAAT
TATAAAAGCAAAAAGAAATCTTCATGCAGAATCATGTAAACGAATCTTTTATTTTATATA
TAATTTGAATGTTGAAAATAAATGCAATTTAATTTAAATGTGGAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 601
3' end seq. ID CHD673Z
3' end seq.
>CHD673Z.Seq
NNNNNNNNNNAATTAGGACCAGGTAAAAATGACAGGAATTCGAAGCGCACTACCAAATCC
AGCCTCATTGGTTGAAAGTTCAACTCACAGATTTCTCATTTTCGATGCACCAAATGATGA
TAATCTACCTTTATATATAAATGAATTAAAAAAATATAACGTCTCTCATTTAGTTAGAGC
ATGTGATCCAACATATTCAACTGAACCACTTCAAGCAATTGGTATCCAAGTGCATGATAT
GCCATTTGCAGATGGTGGTTCTCCTCCTGATGCGGTTGTAAATAATTGGATTAAAATACT
TGGGGAATCTTACAAAAAAGATTCAAAAGAAACTATTGGTATTCATTGTGTTGCAGGACT
TGGTAGAGCACCAGTTTTAGTGGCAATTGCATTGATTGAGGGTGGAATGAATCCACTTCA
AGCAGTTGAATACATTCGTGAAAGAAGAAGAGGTTCAATTAATATTAAACAAATTCAATA
TCTTAAAAATTATAAAAGCAAAAAGAAATCTTCATGCAGAATCATGTAAACGAATCTTTT
ATTCTTATATATAATT
Length of 3' end seq. 556
Connected seq. ID CHD673P
Connected seq.
>CHD673P.Seq
AATTAGGACCAGGTAAAAATGACAGGAATTCGAAGCGCACTACCAAATCCAGCCTCATTG
GTTGAAAGTTCAACTCACAGATTTCTCATTTTCGATGCACCAAATGATGATAATCTACCT
TTATATATAAATGAATTAAAAAAATATAACGTCTCTCATTTAGTTAGAGCATGTGATCCA
ACATATTCAACTGAACCACTTCAAGCAATTGGTATCCAAGTGCATGATATGCCATTTGCA
GATGGTGGTTCTCCTCCTGATGCGGTTGTAAATAATTGGATTAAAATACTTGGGGAATCT
TACAAAAAAGATTCAAAAGAAACTATTGGTATTCATTGTGTTGCAGGACTTGGTAGAGCA
CCAGTTTTAGTGGCAATTGCATTGATTGAGGGTGGAATGAATCCACTTCAAGCAGTTGAA
TACATTCGTGAAAGAAGAAGAGGTTCAATTAATATTAAACAAATTCAATATCTTAAAAAT
TATAAAAGCAAAAAGAAATCTTCATGCAGAATCATGTAAACGAATCTTTTATTTTATATA
TAATTTGAATGTTGAAAATAAATGCAATTTAATTTAAATGTGGAAAAAAAA---------
-AATTAGGACCAGGTAAAAATGACAGGAATTCGAAGCGCACTACCAAATCCAGCCTCATT
GGTTGAAAGTTCAACTCACAGATTTCTCATTTTCGATGCACCAAATGATGATAATCTACC
TTTATATATAAATGAATTAAAAAAATATAACGTCTCTCATTTAGTTAGAGCATGTGATCC
AACATATTCAACTGAACCACTTCAAGCAATTGGTATCCAAGTGCATGATATGCCATTTGC
AGATGGTGGTTCTCCTCCTGATGCGGTTGTAAATAATTGGATTAAAATACTTGGGGAATC
TTACAAAAAAGATTCAAAAGAAACTATTGGTATTCATTGTGTTGCAGGACTTGGTAGAGC
ACCAGTTTTAGTGGCAATTGCATTGATTGAGGGTGGAATGAATCCACTTCAAGCAGTTGA
ATACATTCGTGAAAGAAGAAGAGGTTCAATTAATATTAAACAAATTCAATATCTTAAAAA
TTATAAAAGCAAAAAGAAATCTTCATGCAGAATCATGTAAACGAATCTTTTATTCTTATA
TATAATT
Length of connected seq. 1137
Full length Seq ID -
Full length Seq. -
Length of full length seq. -