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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHD612
Library CH
(Link to library)
Clone ID CHD612
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12870-1
Original site URL
Representative seq. ID CHD612P
(Link to Original site)
Representative DNA sequence 
>CHD612 (CHD612Q) /CSM/CH/CHD6-A/CHD612Q.Seq.d/
AGATTATACCCCAAAAGGATATCATATTACCGAATTAGAATCTGATTCAATTTATTTAGA
TGAACATTTTTCAGGTAATGCAAAGATTTTCCATAATCCAGCAGTAGCAGTATTATATGA
ACAAGCATTGGCATTTGAACATGGATCAGCAATTACAAGTACAGGTGCATTGGTAACCAG
ATCAGGTGTAAAGACTGGAAGATCACCAAAGGATAAGAGAATTGTAAAGGAACCATCATC
ACAAGATGATATTTGGTGGGGACCAGTCAATATTGCAATGGATGATCTTTCATTTATGAT
CAATCGTGAAAGAGCCATCGATTATTTGAACACTCAAGAAAAGATCTACGTTATCGATGG
TTACGCAGGATGGGATCCAAAATATCGTATCAAGGTTAGAGTCATTTGCGCACGTGCCTA
CCATGCTCTCTTTATGCACAATATGTTAATTCGTCCAGCCAATAGAGAAGAGTTAAGAAA
TTTTGGAGAACCAGATTACACCATTTACAATGCAGGTCAATTCCCAGCAAATCGTTACAC
TAAGGGTATGTCTTCAAGCTCATCAATCGCCATTGATTTCGCTCGTAAGXXXXXXXXXXT
ACAATGAGTACTCTCGTAAGGTCGATTACAATGATGTCTCTATCACTGAGAACACCCGTT
GTGCCTACCCATTGGAACATATCCCAAATGCCAAATTCCCAGCTATTGCCGGTCATCCAA
AGAATATCATTATGTTAACTTGTGATGCTTTTGGTATTCTCCCACCAGTATCTCGTTTAG
ATGCCAATCAAGTTATGTACCATTTCATTCAAGGTTATACCGCCAAAGTTGCCGGTACTG
AAGTTGGTGTCACCGAACCAACTGCAACCTTTTCAAGTTGTTATGGTGAACCATTCATCG
TATGGCATCCAACCAAATACGCTGAAATGTTGGCTTCTCAACTCCATAAACATTCAGCTC
GTGCTTGGTTAATTAATACTGGTTGGACTGGTGGTTCTCATGGTGTTGGTTCTCGTATTA
AATTGGCCTACACTCGTGCCATCATCGATGCCATTCACAGTGGAGAACTTGAAAAAATTC
CAACCACTAAAATGGATGTTTTCGGTTTCCAAGTACCAAATAGTTGTCCAGGTGTTCCAT
CTGAAATTTTAATGCCAATTAATGGTTGGGCTGATAAAGAGAAATATGTTTCAACTATGC
ATAAATTGGCTAAATTATTTATTGAAAATTTCAAAAAATTNCCAAGTATAAAGNCNNCAC
CAG
sequence update 2002.10.25
Translated Amino Acid sequence 
DYTPKGYHITELESDSIYLDEHFSGNAKIFHNPAVAVLYEQALAFEHGSAITSTGALVTR
SGVKTGRSPKDKRIVKEPSSQDDIWWGPVNIAMDDLSFMINRERAIDYLNTQEKIYVIDG
YAGWDPKYRIKVRVICARAYHALFMHNMLIRPANREELRNFGEPDYTIYNAGQFPANRYT
KGMSSSSSIAIDFARK---

---YNEYSRKVDYNDVSITENTRCAYPLEHIPNAKFPAIAGHPKNIIMLTCDAFGILPPV
SRLDANQVMYHFIQGYTAKVAGTEVGVTEPTATFSSCYGEPFIVWHPTKYAEMLASQLHK
HSARAWLINTGWTGGSHGVGSRIKLAYTRAIIDAIHSGELEKIPTTKMDVFGFQVPNSCP
GVPSEILMPINGWADKEKYVSTMHKLAKLFIENFKKXPSIKXXP
Translated Amino Acid sequence (All Frames) 
Frame A:
rlypkrisyyriri*fnlfr*tffr*ckdfp*sssssii*tsigi*twisnykyrcignq
irckdwkitkg*enckgtiitr*ylvgtsqycng*sfiydqs*kshrlfehsrkdlryrw
lrrmgskisyqg*shlrtclpcslyaqyvnsssq*rrvkkfwrtrlhhlqcrsipskslh
*gyvfklinrh*frs*---

---YNEYSRKVDYNDVSITENTRCAYPLEHIPNAKFPAIAGHPKNIIMLTCDAFGILPPV
SRLDANQVMYHFIQGYTAKVAGTEVGVTEPTATFSSCYGEPFIVWHPTKYAEMLASQLHK
HSARAWLINTGWTGGSHGVGSRIKLAYTRAIIDAIHSGELEKIPTTKMDVFGFQVPNSCP
GVPSEILMPINGWADKEKYVSTMHKLAKLFIENFKKXPSIKXXP

Frame B:
DYTPKGYHITELESDSIYLDEHFSGNAKIFHNPAVAVLYEQALAFEHGSAITSTGALVTR
SGVKTGRSPKDKRIVKEPSSQDDIWWGPVNIAMDDLSFMINRERAIDYLNTQEKIYVIDG
YAGWDPKYRIKVRVICARAYHALFMHNMLIRPANREELRNFGEPDYTIYNAGQFPANRYT
KGMSSSSSIAIDFARK---

---tmstlvrsitmmslslrtpvvpthwnisqmpnsqllpviqrislc*lvmllvfshqy
lv*mpiklctisfkvippklpvlklvspnqlqpfqvvmvnhssygiqpntlkcwllnsin
iqlvlg*lilvglvvlmvlvlvlnwptlvpssmpftvenlkkfqplkwmfsvskyqivvq
vfhlkf*cqlmvglikrnmfqlcinwlnyllkisknxqv*xxhq

Frame C:
iipqkdiilpn*nliqfi*mnifqvmqrfsiiqq*qyymnkhwhlnmdqqlqvqvhw*pd
qv*rledhqrirel*rnhhhkmifggdqsilqwmifhl*sivkepsii*tlkkrstlsmv
tqdgiqnivsrlesfahvptmlslctic*fvqpieks*eilenqitpftmqvnsqqivtl
rvclqahqsplislv---

---q*vls*grlq*clyh*ehplclpigtypkcqipsycrsskeyhyvnl*cfwysptsi
sfrcqssyvpfhsrlyrqscry*swchrtncnlfkllw*tihrmasnqir*nvgfstp*t
fssclvn*ywldwwfswcwfsy*iglhschhrchsqwrt*knsnh*ngcfrfpstk*lsr
csi*nfnan*wlg**reicfnya*ig*iiy*kfqkixkykxxt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHD612 (CHD612Q) /CSM/CH/CHD6-A/CHD612Q.Seq.d/                       2420   0.0
SFF434 (SFF434Q) /CSM/SF/SFF4-B/SFF434Q.Seq.d/                       1271   0.0
AFD154 (AFD154Q) /CSM/AF/AFD1-C/AFD154Q.Seq.d/                       1265   0.0
AFO837 (AFO837Q) /CSM/AF/AFO8-B/AFO837Q.Seq.d/                       1263   0.0
AFO776 (AFO776Q) /CSM/AF/AFO7-D/AFO776Q.Seq.d/                       1263   0.0
CFG166 (CFG166Q) /CSM/CF/CFG1-C/CFG166Q.Seq.d/                       1257   0.0
CFB335 (CFB335Q) /CSM/CF/CFB3-B/CFB335Q.Seq.d/                       1229   0.0
SFC665 (SFC665Q) /CSM/SF/SFC6-C/SFC665Q.Seq.d/                       1223   0.0
CHA433 (CHA433Q) /CSM/CH/CHA4-B/CHA433Q.Seq.d/                       1185   0.0
AFN344 (AFN344Q) /CSM/AF/AFN3-B/AFN344Q.Seq.d/                       1174   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.  1271   0.0    1
U70473|U70473.1 Candida albicans PEP carboxykinase (PCK1) gene, complete cds.    70   7e-13  4
AX536984|AX536984.1 Sequence 585 from Patent WO02064766.           70   5e-12  3
AX489612|AX489612.1 Sequence 6912 from Patent WO02053728.          70   5e-12  3
AX536662|AX536662.1 Sequence 263 from Patent WO02064766.           42   3e-11  6
Z28322|Z28322.1 S.cerevisiae chromosome XI reading frame ORF YKR097w.    42   7e-11  6
AX537040|AX537040.1 Sequence 641 from Patent WO02064766.           70   2e-10  5
AY723843|AY723843.1 Saccharomyces cerevisiae clone FLH004468.01X YKR097W gene, complete cds.    40   3e-10  6
CR382137|CR382137.1 Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii.    62   5e-10  16
U24234|U24234.1 Saccharomyces cerevisiae phosphoenolpyruvate carboxykinase (pck) gene, complete cds.    42   9e-10  6
dna update 2004. 9.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM211855_1(FM211855|pid:none) Melinis repens partial pckE gene f...   288   4e-76
AB050473_1(AB050473|pid:none) Flaveria pringlei pck3-11 mRNA for...   287   5e-76
AB050471_1(AB050471|pid:none) Flaveria trinervia pck4-9 mRNA for...   286   8e-76
BT046193_1(BT046193|pid:none) Arabidopsis thaliana unknown prote...   286   8e-76
T07857(T07857) probable phosphoenolpyruvate carboxykinase (ATP) ...   285   2e-75
FM211865_1(FM211865|pid:none) Paspalum quadrifarium partial pckF...   285   2e-75
FM211843_1(FM211843|pid:none) Eleusine indica partial pck gene f...   285   3e-75
FM211885_1(FM211885|pid:none) Digitaria sanguinalis partial mRNA...   284   4e-75
FM211840_1(FM211840|pid:none) Digitaria sanguinalis partial pck ...   284   4e-75
BT062880_1(BT062880|pid:none) Zea mays full-length cDNA clone ZM...   284   4e-75
protein update 2009. 3.30
PSORT 

 psg: 0.75  gvh: 0.45  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHD612 is cyt
5' end seq. ID CHD612F
5' end seq. 
>CHD612F.Seq
AGATTATACCCCAAAAGGATATCATATTACCGAATTAGAATCTGATTCAATTTATTTAGA
TGAACATTTTTCAGGTAATGCAAAGATTTTCCATAATCCAGCAGTAGCAGTATTATATGA
ACAAGCATTGGCATTTGAACATGGATCAGCAATTACAAGTACAGGTGCATTGGTAACCAG
ATCAGGTGTAAAGACTGGAAGATCACCAAAGGATAAGAGAATTGTAAAGGAACCATCATC
ACAAGATGATATTTGGTGGGGACCAGTCAATATTGCAATGGATGATCTTTCATTTATGAT
CAATCGTGAAAGAGCCATCGATTATTTGAACACTCAAGAAAAGATCTACGTTATCGATGG
TTACGCAGGATGGGATCCAAAATATCGTATCAAGGTTAGAGTCATTTGCGCACGTGCCTA
CCATGCTCTCTTTATGCACAATATGTTAATTCGTCCAGCCAATAGAGAAGAGTTAAGAAA
TTTTGGAGAACCAGATTACACCATTTACAATGCAGGTCAATTCCCAGCAAATCGTTACAC
TAAGGGTATGTCTTCAAGCTCATCAATCGCCATTGATTTCGCTCGTAAGNNNNNNNNNN
Length of 5' end seq. 599
3' end seq. ID CHD612Z
3' end seq. 
>CHD612Z.Seq
NNNNNNNNNNTACAATGAGTACTCTCGTAAGGTCGATTACAATGATGTCTCTATCACTGA
GAACACCCGTTGTGCCTACCCATTGGAACATATCCCAAATGCCAAATTCCCAGCTATTGC
CGGTCATCCAAAGAATATCATTATGTTAACTTGTGATGCTTTTGGTATTCTCCCACCAGT
ATCTCGTTTAGATGCCAATCAAGTTATGTACCATTTCATTCAAGGTTATACCGCCAAAGT
TGCCGGTACTGAAGTTGGTGTCACCGAACCAACTGCAACCTTTTCAAGTTGTTATGGTGA
ACCATTCATCGTATGGCATCCAACCAAATACGCTGAAATGTTGGCTTCTCAACTCCATAA
ACATTCAGCTCGTGCTTGGTTAATTAATACTGGTTGGACTGGTGGTTCTCATGGTGTTGG
TTCTCGTATTAAATTGGCCTACACTCGTGCCATCATCGATGCCATTCACAGTGGAGAACT
TGAAAAAATTCCAACCACTAAAATGGATGTTTTCGGTTTCCAAGTACCAAATAGTTGTCC
AGGTGTTCCATCTGAAATTTTAATGCCAATTAATGGTTGGGCTGATAAAGAGAAATATGT
TTCAACTATGCATAAATTGGCTAAATTATTTATTGAAAATTTCAAAAAATTNCCAAGTAT
AAAGNCNNCACCAG
Length of 3' end seq. 674
Connected seq. ID CHD612P
Connected seq. 
>CHD612P.Seq
AGATTATACCCCAAAAGGATATCATATTACCGAATTAGAATCTGATTCAATTTATTTAGA
TGAACATTTTTCAGGTAATGCAAAGATTTTCCATAATCCAGCAGTAGCAGTATTATATGA
ACAAGCATTGGCATTTGAACATGGATCAGCAATTACAAGTACAGGTGCATTGGTAACCAG
ATCAGGTGTAAAGACTGGAAGATCACCAAAGGATAAGAGAATTGTAAAGGAACCATCATC
ACAAGATGATATTTGGTGGGGACCAGTCAATATTGCAATGGATGATCTTTCATTTATGAT
CAATCGTGAAAGAGCCATCGATTATTTGAACACTCAAGAAAAGATCTACGTTATCGATGG
TTACGCAGGATGGGATCCAAAATATCGTATCAAGGTTAGAGTCATTTGCGCACGTGCCTA
CCATGCTCTCTTTATGCACAATATGTTAATTCGTCCAGCCAATAGAGAAGAGTTAAGAAA
TTTTGGAGAACCAGATTACACCATTTACAATGCAGGTCAATTCCCAGCAAATCGTTACAC
TAAGGGTATGTCTTCAAGCTCATCAATCGCCATTGATTTCGCTCGTAAG----------T
ACAATGAGTACTCTCGTAAGGTCGATTACAATGATGTCTCTATCACTGAGAACACCCGTT
GTGCCTACCCATTGGAACATATCCCAAATGCCAAATTCCCAGCTATTGCCGGTCATCCAA
AGAATATCATTATGTTAACTTGTGATGCTTTTGGTATTCTCCCACCAGTATCTCGTTTAG
ATGCCAATCAAGTTATGTACCATTTCATTCAAGGTTATACCGCCAAAGTTGCCGGTACTG
AAGTTGGTGTCACCGAACCAACTGCAACCTTTTCAAGTTGTTATGGTGAACCATTCATCG
TATGGCATCCAACCAAATACGCTGAAATGTTGGCTTCTCAACTCCATAAACATTCAGCTC
GTGCTTGGTTAATTAATACTGGTTGGACTGGTGGTTCTCATGGTGTTGGTTCTCGTATTA
AATTGGCCTACACTCGTGCCATCATCGATGCCATTCACAGTGGAGAACTTGAAAAAATTC
CAACCACTAAAATGGATGTTTTCGGTTTCCAAGTACCAAATAGTTGTCCAGGTGTTCCAT
CTGAAATTTTAATGCCAATTAATGGTTGGGCTGATAAAGAGAAATATGTTTCAACTATGC
ATAAATTGGCTAAATTATTTATTGAAAATTTCAAAAAATTNCCAAGTATAAAGNCNNCAC
CAG
Length of connected seq. 1253
Full length Seq ID -
Full length Seq. -
Length of full length seq. -