CHD534
Library CH
(Link to library)
Clone ID CHD534
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15540-1
Original site URL
Representative seq. ID CHD534E
(Link to Original site)
Representative DNA sequence
>CHD534 (CHD534Q) /CSM/CH/CHD5-B/CHD534Q.Seq.d/
AACAACAACAATTACAACAACAACAATTACAACAACAATTTAATATTGGCAAACCATGTA
ACATTAATCAAAAGAAAGGTAGAGGTGCTAATAATAATAATAACAACATGCCAATTGGTA
ATCAAGCAAGTTTAGTTATTAGTCATCCTAGTTTAAAAATGGAAGGTCATCATCATTTAC
AACAACAACAACAACAACAACATCATCATCAACATCAACAACATCAACAAAATGGAAATG
GTAATAATACACAAATTGTAAATTCAGCATTCTTAGATTTATCATCACCAGATTCACATA
ATCAAATGTCACCATCATCACCAATTTGTTTACCAGAAAGTCCAATGGGTGCTCAACATT
GGGAGAGTGGTTTAGATCCATCAAGTTTACAAAAACAAAATGAAATTAATCCACCAATTT
CCGTTCGTTCCAATGTCGTTTTCTTTGAACCATACTTGGCCGGTGAACCAGGCAGACACA
AGGCATGTTGGAAACTCCTCGAACCAATGCATAGAAACTACTACCAACCAATCCAATTCA
AATTACCATCATTCCCAGACACTTCATTACCAATCACACAAATCGATGATAAAACCGGTA
TCTTTGATTCTCAACGTTTCCTCGCATTCAATAATCCACAAGCCATGAGTAAATATGAAT
CCTATCGTATCTACATTCATCCTTCACTCGGTTACAGTGGTAATGCAAAGAGATTCAAAC
AACAACCAGATGTCAATGAGAAAGCTTTGATTTTGGATGGCAATGTCTACGATGGACATT
TAAATCCAATTTACAACTGTAAAATCTGTACCGAATATTATCAAACCAAATCTTACTTTT
CCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAATAACATATTAACTCGTG
TCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGCAGTGGTCATAACTCTC
ATATCCCACTCTACTTTCACTTTACCCTTACAAATCCACTCACAAATGAAGTTGTACTCC
AATCACTCATTAATGTTAATGTTAAGCAAGGAAAAAATCAGTTCCAAATAAATCGAAAAA
ACAAAGATTNAATAAAAATTAATAATAA
sequence update 2002.10.27
Translated Amino Acid sequence
QQQLQQQQLQQQFNIGKPCNINQKKGRGANNNNNNMPIGNQASLVISHPSLKMEGHHHLQ
QQQQQQHHHQHQQHQQNGNGNNTQIVNSAFLDLSSPDSHNQMSPSSPICLPESPMGAQHW
ESGLDPSSLQKQNEINPPISVRSNVVFFEPYLAGEPGRHKACWKLLEPMHRNYYQPIQFK
LPSFPDTSLPITQIDDKTGIFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQ
QPDVNEKALILDGNVYDGHLNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRV
KDGGFTLSLKPMCCSGHNSHIPLYFHFTLTNPLTNEVVLQSLINVNVKQGKNQFQINRKN
KDXIKINN


Translated Amino Acid sequence (All Frames)
Frame A:
nnnnynnnnynnnlilanhvtlikrkvevliiiittcqlvikqv*llvilv*kwkviiiy
nnnnnnniiininninkmemviihkl*iqhs*iyhhqihiikchhhhqfvyqkvqwvlni
grvv*ihqvyknkmklihqfpfvpmsfslnhtwpvnqadtrhvgnssnqcietttnqsns
nyhhsqtlhyqshksmikpvslilnvsshsiihkp*vnmnpivstfilhsvtvvmqrdsn
nnqmsmrkl*fwmamstmdi*iqfttvksvpniikpnltfplihmqkvkffwskity*lv
skmvvslsp*sqcvavvitlishstftlplqihsqmklysnhslmlmlskekissk*iek
tkix*klii


Frame B:
tttittttittti*ywqtm*h*sker*rc*****qhanw*sskfsy*ss*fkngrsssft
tttttttssststtstkwkw**ytnckfsilrfiitrft*snvtiitnlftrksngcstl
gewfrsikftktk*n*stnfrsfqcrfl*tilgr*trqtqgmletprtna*kllptnpiq
itiiprhfitnhtnr**nryl*fstfpriq*stshe*i*ilsylhssftrlqw*ckeiqt
ttrcq*esfdfgwqclrwtfksnlql*nlyrilsnqillfr*stckr*ssfgqk*hinsc
qrwwfhsllkanvlqws*lsyptllslypyksthk*sctpith*c*c*arkksvpnkskk
qrxnkn***


Frame C:
QQQLQQQQLQQQFNIGKPCNINQKKGRGANNNNNNMPIGNQASLVISHPSLKMEGHHHLQ
QQQQQQHHHQHQQHQQNGNGNNTQIVNSAFLDLSSPDSHNQMSPSSPICLPESPMGAQHW
ESGLDPSSLQKQNEINPPISVRSNVVFFEPYLAGEPGRHKACWKLLEPMHRNYYQPIQFK
LPSFPDTSLPITQIDDKTGIFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQ
QPDVNEKALILDGNVYDGHLNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRV
KDGGFTLSLKPMCCSGHNSHIPLYFHFTLTNPLTNEVVLQSLINVNVKQGKNQFQINRKN
KDXIKINN


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHD534 (CHD534Q) /CSM/CH/CHD5-B/CHD534Q.Seq.d/ 1735 0.0
VFA838 (VFA838Q) /CSM/VF/VFA8-B/VFA838Q.Seq.d/ 1689 0.0
VHJ792 (VHJ792Q) /CSM/VH/VHJ7-D/VHJ792Q.Seq.d/ 1461 0.0
AFO507 (AFO507Q) /CSM/AF/AFO5-A/AFO507Q.Seq.d/ 1405 0.0
CHR159 (CHR159Q) /CSM/CH/CHR1-C/CHR159Q.Seq.d/ 1403 0.0
CFJ232 (CFJ232Q) /CSM/CF/CFJ2-B/CFJ232Q.Seq.d/ 1348 0.0
CHO693 (CHO693Q) /CSM/CH/CHO6-D/CHO693Q.Seq.d/ 1324 0.0
SHA665 (SHA665Q) /CSM/SH/SHA6-C/SHA665Q.Seq.d/ 1306 0.0
SHL560 (SHL560Q) /CSM/SH/SHL5-C/SHL560Q.Seq.d/ 1289 0.0
SHJ550 (SHJ550Q) /CSM/SH/SHJ5-C/SHJ550Q.Seq.d/ 1223 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 40 1e-05 6
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 40 2e-05 5
AJ277590|AJ277590.1 Dictyostelium discoideum iplA gene for inositol 1,4,5-trisphosphate receptor-like protein (IplA), exons 1-4. 36 3e-05 6
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 40 7e-05 5
AF538053|AF538053.1 Monosiga brevicollis mitochondrion, complete genome. 36 7e-05 6
BX088564|BX088564.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-239H19. 40 1e-04 7
AC116924|AC116924.3 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence. 36 2e-04 8
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 36 5e-04 9
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 42 5e-04 8
CK417372|CK417372.1 AUF_IpInt_56_d19 Intestine cDNA library Ictalurus punctatus cDNA 5', mRNA sequence. 40 6e-04 2
dna update 2004. 9.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM773447_1(AM773447|pid:none) Aedes aegypti mRNA for hormone rec... 37 1.2
AY698061_1(AY698061|pid:none) Schistosoma mansoni nuclear recept... 36 2.6
AM269894_32(AM269894|pid:none) Eimeria tenella chromosome 1, ord... 29 4.1
BA000040_1129(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 35 5.8
BT047510_1(BT047510|pid:none) Salmo salar clone ssal-evd-578-123... 34 7.7
AF438165_8(AF438165|pid:none) Camelpox virus M-96 from Kazakhsta... 34 7.7
BT056394_1(BT056394|pid:none) Salmo salar clone ssal-evd-520-220... 34 7.7
EU546237_1(EU546237|pid:none) Simarouba berteroana voucher WT 14... 34 10.0
CP001130_1319(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, c... 34 10.0
EU042882_1(EU042882|pid:none) Samadera indica voucher JTH 138 tr... 34 10.0
protein update 2009. 4.12
PSORT

psg: 0.69 gvh: 0.29 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall

>> prediction for CHD534 is nuc

5' end seq. ID CHD534F
5' end seq.
>CHD534F.Seq
AACAACAACAATTACAACAACAACAATTACAACAACAATTTAATATTGGCAAACCATGTA
ACATTAATCAAAAGAAAGGTAGAGGTGCTAATAATAATAATAACAACATGCCAATTGGTA
ATCAAGCAAGTTTAGTTATTAGTCATCCTAGTTTAAAAATGGAAGGTCATCATCATTTAC
AACAACAACAACAACAACAACATCATCATCAACATCAACAACATCAACAAAATGGAAATG
GTAATAATACACAAATTGTAAATTCAGCATTCTTAGATTTATCATCACCAGATTCACATA
ATCAAATGTCACCATCATCACCAATTTGTTTACCAGAAAGTCCAATGGGTGCTCAACATT
GGGAGAGTGGTTTAGATCCATCAAGTTTACAAAAACAAAATGAAATTAATCCACCAATTT
CCGTTCGTTCCAATGTCGTTTTCTTTGAACCATACTTGGCCGGTGAACCAGGCAGACACA
AGGCATGTTGGAAACTCCTCGAACCAATGCATAGAAACTACTACCAACCAATCCAATTCA
AATTACCATCATTCCCAGACACTTCATTACCAATCACACAAATCGATGATAAAACNNNNN
NNNNN
Length of 5' end seq. 605
3' end seq. ID CHD534Z
3' end seq.
>CHD534Z.Seq
NNNNNNNNNNGTGAACCAGGCAGACACAAGGCATGTTGGAAACTCCTCGAACCAATGCAT
AGAAACTACTACCAACCAATCCAATTCAAATTACCATCATTCCCAGACACTTCATTACCA
ATCACACAAATCGATGATAAAACCGGTATCTTTGATTCTCAACGTTTCCTCGCATTCAAT
AATCCACAAGCCATGAGTAAATATGAATCCTATCGTATCTACATTCATCCTTCACTCGGT
TACAGTGGTAATGCAAAGAGATTCAAACAACAACCAGATGTCAATGAGAAAGCTTTGATT
TTGGATGGCAATGTCTACGATGGACATTTAAATCCAATTTACAACTGTAAAATCTGTACC
GAATATTATCAAACCAAATCTTACTTTTCCGCTAATCCACATGCAAAAGGTAAAGTTCTT
TTGGTCAAAAATAACATATTAACTCGTGTCAAAGATGGTGGTTTCACTCTCTCCTTAAAG
CCAATGTGTTGCAGTGGTCATAACTCTCATATCCCACTCTACTTTCACTTTACCCTTACA
AATCCACTCACAAATGAAGTTGTACTCCAATCACTCATTAATGTTAATGTTAAGCAAGGA
AAAAATCAGTTCCAAATAAATCGAAAAAACAAAGATTNAATAAAAATTAATAATAA
Length of 3' end seq. 656
Connected seq. ID CHD534P
Connected seq.
>CHD534P.Seq
AACAACAACAATTACAACAACAACAATTACAACAACAATTTAATATTGGCAAACCATGTA
ACATTAATCAAAAGAAAGGTAGAGGTGCTAATAATAATAATAACAACATGCCAATTGGTA
ATCAAGCAAGTTTAGTTATTAGTCATCCTAGTTTAAAAATGGAAGGTCATCATCATTTAC
AACAACAACAACAACAACAACATCATCATCAACATCAACAACATCAACAAAATGGAAATG
GTAATAATACACAAATTGTAAATTCAGCATTCTTAGATTTATCATCACCAGATTCACATA
ATCAAATGTCACCATCATCACCAATTTGTTTACCAGAAAGTCCAATGGGTGCTCAACATT
GGGAGAGTGGTTTAGATCCATCAAGTTTACAAAAACAAAATGAAATTAATCCACCAATTT
CCGTTCGTTCCAATGTCGTTTTCTTTGAACCATACTTGGCCGGTGAACCAGGCAGACACA
AGGCATGTTGGAAACTCCTCGAACCAATGCATAGAAACTACTACCAACCAATCCAATTCA
AATTACCATCATTCCCAGACACTTCATTACCAATCACACAAATCGATGATAAAAC-----
-----GTGAACCAGGCAGACACAAGGCATGTTGGAAACTCCTCGAACCAATGCATAGAAA
CTACTACCAACCAATCCAATTCAAATTACCATCATTCCCAGACACTTCATTACCAATCAC
ACAAATCGATGATAAAACCGGTATCTTTGATTCTCAACGTTTCCTCGCATTCAATAATCC
ACAAGCCATGAGTAAATATGAATCCTATCGTATCTACATTCATCCTTCACTCGGTTACAG
TGGTAATGCAAAGAGATTCAAACAACAACCAGATGTCAATGAGAAAGCTTTGATTTTGGA
TGGCAATGTCTACGATGGACATTTAAATCCAATTTACAACTGTAAAATCTGTACCGAATA
TTATCAAACCAAATCTTACTTTTCCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGGT
CAAAAATAACATATTAACTCGTGTCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAAT
GTGTTGCAGTGGTCATAACTCTCATATCCCACTCTACTTTCACTTTACCCTTACAAATCC
ACTCACAAATGAAGTTGTACTCCAATCACTCATTAATGTTAATGTTAAGCAAGGAAAAAA
TCAGTTCCAAATAAATCGAAAAAACAAAGATTNAATAAAAATTAATAATAA
Length of connected seq. 1241
Full length Seq ID CHD534E
Full length Seq.
>CHD534E.Seq
AACAACAACAATTACAACAACAACAATTACAACAACAATTTAATATTGGCAAACCATGTA
ACATTAATCAAAAGAAAGGTAGAGGTGCTAATAATAATAATAACAACATGCCAATTGGTA
ATCAAGCAAGTTTAGTTATTAGTCATCCTAGTTTAAAAATGGAAGGTCATCATCATTTAC
AACAACAACAACAACAACAACATCATCATCAACATCAACAACATCAACAAAATGGAAATG
GTAATAATACACAAATTGTAAATTCAGCATTCTTAGATTTATCATCACCAGATTCACATA
ATCAAATGTCACCATCATCACCAATTTGTTTACCAGAAAGTCCAATGGGTGCTCAACATT
GGGAGAGTGGTTTAGATCCATCAAGTTTACAAAAACAAAATGAAATTAATCCACCAATTT
CCGTTCGTTCCAATGTCGTTTTCTTTGAACCATACTTGGCCGGTGAACCAGGCAGACACA
AGGCATGTTGGAAACTCCTCGAACCAATGCATAGAAACTACTACCAACCAATCCAATTCA
AATTACCATCATTCCCAGACACTTCATTACCAATCACACAAATCGATGATAAAACCGGTA
TCTTTGATTCTCAACGTTTCCTCGCATTCAATAATCCACAAGCCATGAGTAAATATGAAT
CCTATCGTATCTACATTCATCCTTCACTCGGTTACAGTGGTAATGCAAAGAGATTCAAAC
AACAACCAGATGTCAATGAGAAAGCTTTGATTTTGGATGGCAATGTCTACGATGGACATT
TAAATCCAATTTACAACTGTAAAATCTGTACCGAATATTATCAAACCAAATCTTACTTTT
CCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAATAACATATTAACTCGTG
TCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGCAGTGGTCATAACTCTC
ATATCCCACTCTACTTTCACTTTACCCTTACAAATCCACTCACAAATGAAGTTGTACTCC
AATCACTCATTAATGTTAATGTTAAGCAAGGAAAAAATCAGTTCCAAATAAATCGAAAAA
ACAAAGATTNAATAAAAATTAATAATAA
Length of full length seq. 1108