NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHD527
Library CH
(Link to library)
Clone ID CHD527
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16521-1
Original site URL
Representative seq. ID CHD527P
(Link to Original site)
Representative DNA sequence 
>CHD527 (CHD527Q) /CSM/CH/CHD5-B/CHD527Q.Seq.d/
ATTTAAGGCGTTCTCTAGCCAACAATGTACAGGAACTCAACATTATACAGAAACTACATA
AATTATAACATTGGTAGTAAAATGTTCCGTATAATTGTGAAGTTAACTCAAGAAGAGATA
ATGGAGTTATCGGAATTAAGAATGCTGATATGAGTAATGTTAATAAGGTTAAGACCTTAT
CACTGAAAATTAGAAGTTTCCTAATAAAAAGGTAAGCTGATTAGGGTTACGCGATCGCTA
AGATTAATATGACAATAAACTATCGATGCGCATATAGATTAATAATTCTAACGTTTTTAT
TGTAGTTTTAATTGACATGTGTATTTTAAATAATTATATTATACTTACATTATAGATTAT
TTGAAATATAAGTTTTAAAAATAGATTAAAACAAAATATCTGTAAAAAGATATTTTAAAT
AAAAAATCGTACTTAAACCGACACTGGTTAATTGATAGAATATATTAAAGTGTAGAATGA
ATGATTCTGAAGGAACTCGGCAAAATAACTCCGTAACTGCGGGAGAAGGAGAGCCTTTGT
TGTAAAAAATGAAGGTCXXXXXXXXXXTACAAGTCGATCAGAGACGCAAGTCGATCATAG
TGATCCAATAGTTCTGTGTGGAAAGGCTATTGCTAACGGATAAAAGGTACGCTAGGGATA
ACAGGCTAGTCACATATTAGAGTTCATATCTGTTATGTGGTTCGGCACCTCGATGTCGGC
TTAACACATCCCGGAGTTGAAAAAGTTTCCAAGGGTTGGGGTGTTCACCCATTAAAGTGT
TACATGAGCTGGGTTTAAAACGTCGTGAGACAGTTTGGTCCCTATCTACTGTTAAAAACG
AAAAAATTAAAATCCTTCCTTTAGTACGAGAGGACTGAGGTGGGTCGATCACTGGTGTAT
TAATTATTATAACAATAGTACCGTTAAGTAGCTACATCGAAATATTAATAATATATAGTA
TTATTAAGAGAGAACTGCTGAAAAAATATTAAGTAGGAAACTTATTTTAGATTTTTTTAT
AGTCAGGTAAAAGATTATTACTTTGATAGGCTACATATAGAAATGAATAGTAATATAATA
TAAAAATTTGAAAAAATTTTTCCATTAATTCTATAATTAATGTGATCTTATTTATTAAGA
TTAGTAAAGTAGTA
sequence update 2002.10.25
Translated Amino Acid sequence 
fkafssqqctgtqhytett*iitlvvkcsv*l*s*lkkr*wsyrn*ec*ye*c**g*dli
ten*kfpnkkvs*lglrdr*d*ydnklsmri*innsnvfivvlidmcilnnyiiltl*ii
*nisfknrlkqnickkif*iknrt*tdtg*lieyikv*ne*f*rnsak*LRNCGRRRAFV
VKNEG---

---TSRSETQVDHSDPIVLCGKAIANG*kvr*g*qashilefisvmwfgtsmsa*hipel
kkfprvgvfth*svt*agfkts*dslvpiyc*krkn*npsfstrglrwvdhwcinyynns
tvk*lhrninni*yy*ertaekilsrklildffivr*kiitligyi*k*ivi*yknlkkf
fh*fyn*cdliy*d**ss
Translated Amino Acid sequence (All Frames) 
Frame A:
i*gvl*ptmyrnstlyrnyinynigskmfriivkltqeeimelselrmli*vmlirlrpy
h*klevs**kgklirvtrslrli*q*tidahid**f*rfycsfn*hvyfk*lyytyiidy
lkykf*k*iktkyl*kdilnkksylnrhwlidriy*sve*milkelgkitp*lrekeslc
ckk*r---

---yksirdasrs**snssvwkgyc*rikgtlgitg*shirvhicyvvrhldvglthpgv
ekvskgwgvhplkcymswv*nvvrqfgpylllktkklksfl*yertevgrslvy*ll*q*
yr*vatsky**yivllrenc*knik*etyfrffysqvkdyyfdrlhiemnsnii*kfeki
fplil*lm*syllrlvk*

Frame B:
fkafssqqctgtqhytett*iitlvvkcsv*l*s*lkkr*wsyrn*ec*ye*c**g*dli
ten*kfpnkkvs*lglrdr*d*ydnklsmri*innsnvfivvlidmcilnnyiiltl*ii
*nisfknrlkqnickkif*iknrt*tdtg*lieyikv*ne*f*rnsak*LRNCGRRRAFV
VKNEG---

---TSRSETQVDHSDPIVLCGKAIANG*kvr*g*qashilefisvmwfgtsmsa*hipel
kkfprvgvfth*svt*agfkts*dslvpiyc*krkn*npsfstrglrwvdhwcinyynns
tvk*lhrninni*yy*ertaekilsrklildffivr*kiitligyi*k*ivi*yknlkkf
fh*fyn*cdliy*d**ss

Frame C:
lrrslannvqelniiqklhkl*hw**nvpyncevnsrrdngvigiknadmsnvnkvktls
lkirsflikr*ad*gyaiakinmtinyrcayrliiltfll*f*ltcvf*iiilylhyrlf
ei*vlkid*nkisvkryfk*kivlkptlvn**nilkcrmndsegtrqnnsvtagegepll
*kmkv---

---qvdqrrksiiviq*fcverllltdkryardnrlvty*ssyllcgsaprcrlntsrs*
ksfqglgcspikvlhelglkrretvwslstvknekikilplvred*ggsitgvliiitiv
plssyieiliiysiikrellkky*vgnlf*ifl*sgkrlll**atyrne**yniki*knf
sinsiinvilfikiskvv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHD527 (CHD527Q) /CSM/CH/CHD5-B/CHD527Q.Seq.d/                        765   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/               749   0.0
VSD302 (VSD302Q) /CSM/VS/VSD3-A/VSD302Q.Seq.d/                        737   0.0
CFD643 (CFD643Q) /CSM/CF/CFD6-B/CFD643Q.Seq.d/                        648   0.0
AFF514 (AFF514Q) /CSM/AF/AFF5-A/AFF514Q.Seq.d/                        579   e-164
VHO432 (VHO432Q) /CSM/VH/VHO4-B/VHO432Q.Seq.d/                        557   e-157
SHH465 (SHH465Q) /CSM/SH/SHH4-C/SHH465Q.Seq.d/                        557   e-157
SFB625 (SFB625Q) /CSM/SF/SFB6-B/SFB625Q.Seq.d/                        557   e-157
CHI887 (CHI887Q) /CSM/CH/CHI8-D/CHI887Q.Seq.d/                        557   e-157
CHF548 (CHF548Q) /CSM/CH/CHF5-B/CHF548Q.Seq.d/                        557   e-157
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D16466|D16466.1 Dictyostelium discoideum mitochondrial DNA.       648   0.0    7
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.   648   0.0    9
U21880|U21880.1 Dictyostelium discoideum mitochondrion large subunit rRNA (rrn) gene, mitochondrial gene encoding mitochondrial rRNA, partial sequence.   648   0.0    3
AF295546|AF295546.1 Malawimonas jakobiformis mitochondrial DNA, complete genome.   139   e-122  16
AY534144|AY534144.1 Saprolegnia ferax strain ATCC 36051 mitochondion, complete genome.   111   1e-74  12
AP004638|AP004638.1 Psilotum nudum chloroplast DNA, complete genome.    88   1e-70  14
AP005672|AP005672.1 Physcomitrella patens subsp. patens chloroplast DNA, complete genome.    88   1e-69  16
X04465|X04465.1 Marchantia polymorpha chloroplast genome DNA.      88   3e-69  16
AF166114|AF166114.1 Mesostigma viride chloroplast DNA, complete genome.    84   8e-69  16
M81884|M81884.1 Epifagus virginiana chloroplast, complete genome.    96   2e-67  14
dna update 2004. 9.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017197_194(AE017197|pid:none) Rickettsia typhi str. Wilmington...    71   7e-15
EU754742_1(EU754742|pid:none) Candidatus Liberibacter americanus...    67   6e-14
AP009386_1890(AP009386|pid:none) Burkholderia multivorans ATCC 1...    69   9e-14
CP000789_180(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 chr...    69   1e-12
AE016795_1006(AE016795|pid:none) Vibrio vulnificus CMCP6 chromos...    69   4e-12
CP001172_16(CP001172|pid:none) Acinetobacter baumannii AB307-029...    69   3e-10
CP000155_1516(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    65   4e-09
AC151668_11(AC151668|pid:none) Medicago truncatula clone mth2-6e...    62   3e-08
AM085146_13(AM085146|pid:none) Magnetospirillum gryphiswaldense ...    60   6e-08
AY228468_298(AY228468|pid:none) Pinus koraiensis chloroplast, co...    57   1e-06
protein update 2009. 3.30
PSORT 

 psg: 0.65  gvh: 0.34  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: cytoplasmic
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for CHD527 is mit
5' end seq. ID CHD527F
5' end seq. 
>CHD527F.Seq
ATTTAAGGCGTTCTCTAGCCAACAATGTACAGGAACTCAACATTATACAGAAACTACATA
AATTATAACATTGGTAGTAAAATGTTCCGTATAATTGTGAAGTTAACTCAAGAAGAGATA
ATGGAGTTATCGGAATTAAGAATGCTGATATGAGTAATGTTAATAAGGTTAAGACCTTAT
CACTGAAAATTAGAAGTTTCCTAATAAAAAGGTAAGCTGATTAGGGTTACGCGATCGCTA
AGATTAATATGACAATAAACTATCGATGCGCATATAGATTAATAATTCTAACGTTTTTAT
TGTAGTTTTAATTGACATGTGTATTTTAAATAATTATATTATACTTACATTATAGATTAT
TTGAAATATAAGTTTTAAAAATAGATTAAAACAAAATATCTGTAAAAAGATATTTTAAAT
AAAAAATCGTACTTAAACCGACACTGGTTAATTGATAGAATATATTAAAGTGTAGAATGA
ATGATTCTGAAGGAACTCGGCAAAATAACTCCGTAACTGCGGGAGAAGGAGAGCCTTTGT
TGTAAAAAATGAAGGTCNNNNNNNNNN
Length of 5' end seq. 567
3' end seq. ID CHD527Z
3' end seq. 
>CHD527Z.Seq
NNNNNNNNNNTACAAGTCGATCAGAGACGCAAGTCGATCATAGTGATCCAATAGTTCTGT
GTGGAAAGGCTATTGCTAACGGATAAAAGGTACGCTAGGGATAACAGGCTAGTCACATAT
TAGAGTTCATATCTGTTATGTGGTTCGGCACCTCGATGTCGGCTTAACACATCCCGGAGT
TGAAAAAGTTTCCAAGGGTTGGGGTGTTCACCCATTAAAGTGTTACATGAGCTGGGTTTA
AAACGTCGTGAGACAGTTTGGTCCCTATCTACTGTTAAAAACGAAAAAATTAAAATCCTT
CCTTTAGTACGAGAGGACTGAGGTGGGTCGATCACTGGTGTATTAATTATTATAACAATA
GTACCGTTAAGTAGCTACATCGAAATATTAATAATATATAGTATTATTAAGAGAGAACTG
CTGAAAAAATATTAAGTAGGAAACTTATTTTAGATTTTTTTATAGTCAGGTAAAAGATTA
TTACTTTGATAGGCTACATATAGAAATGAATAGTAATATAATATAAAAATTTGAAAAAAT
TTTTCCATTAATTCTATAATTAATGTGATCTTATTTATTAAGATTAGTAAAGTAGTA
Length of 3' end seq. 597
Connected seq. ID CHD527P
Connected seq. 
>CHD527P.Seq
ATTTAAGGCGTTCTCTAGCCAACAATGTACAGGAACTCAACATTATACAGAAACTACATA
AATTATAACATTGGTAGTAAAATGTTCCGTATAATTGTGAAGTTAACTCAAGAAGAGATA
ATGGAGTTATCGGAATTAAGAATGCTGATATGAGTAATGTTAATAAGGTTAAGACCTTAT
CACTGAAAATTAGAAGTTTCCTAATAAAAAGGTAAGCTGATTAGGGTTACGCGATCGCTA
AGATTAATATGACAATAAACTATCGATGCGCATATAGATTAATAATTCTAACGTTTTTAT
TGTAGTTTTAATTGACATGTGTATTTTAAATAATTATATTATACTTACATTATAGATTAT
TTGAAATATAAGTTTTAAAAATAGATTAAAACAAAATATCTGTAAAAAGATATTTTAAAT
AAAAAATCGTACTTAAACCGACACTGGTTAATTGATAGAATATATTAAAGTGTAGAATGA
ATGATTCTGAAGGAACTCGGCAAAATAACTCCGTAACTGCGGGAGAAGGAGAGCCTTTGT
TGTAAAAAATGAAGGTC----------TACAAGTCGATCAGAGACGCAAGTCGATCATAG
TGATCCAATAGTTCTGTGTGGAAAGGCTATTGCTAACGGATAAAAGGTACGCTAGGGATA
ACAGGCTAGTCACATATTAGAGTTCATATCTGTTATGTGGTTCGGCACCTCGATGTCGGC
TTAACACATCCCGGAGTTGAAAAAGTTTCCAAGGGTTGGGGTGTTCACCCATTAAAGTGT
TACATGAGCTGGGTTTAAAACGTCGTGAGACAGTTTGGTCCCTATCTACTGTTAAAAACG
AAAAAATTAAAATCCTTCCTTTAGTACGAGAGGACTGAGGTGGGTCGATCACTGGTGTAT
TAATTATTATAACAATAGTACCGTTAAGTAGCTACATCGAAATATTAATAATATATAGTA
TTATTAAGAGAGAACTGCTGAAAAAATATTAAGTAGGAAACTTATTTTAGATTTTTTTAT
AGTCAGGTAAAAGATTATTACTTTGATAGGCTACATATAGAAATGAATAGTAATATAATA
TAAAAATTTGAAAAAATTTTTCCATTAATTCTATAATTAATGTGATCTTATTTATTAAGA
TTAGTAAAGTAGTA
Length of connected seq. 1144
Full length Seq ID -
Full length Seq. -
Length of full length seq. -