CHD492
Library CH
(Link to library)
Clone ID CHD492
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHD492P
(Link to Original site)
Representative DNA sequence
>CHD492 (CHD492Q) /CSM/CH/CHD4-D/CHD492Q.Seq.d/
ATATACAATTTAATTTCATTAATTTTTTAATGGCAAAACTAAAAATAATTATTTATATTG
TAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTGCTTCAT
TTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTAATAGTG
TCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCTATGCAA
TTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTATTTTATA
TTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAAACCATG
TTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATGGTTACA
GTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAATTCAACT
CATGGGATAACCTCGGTTTTGATCCACAGTATGATACTGCTXXXXXXXXXXAATGATCAA
TTAATTGCTATAGATGTTGGTATTGCAGGTGGTGCTATCGTTGCAGGCGCTGGTGCAGCA
GCAGCCGGTGCAGCAGCCGGTGCTGAGGGTGGTGCCGCAGGAGTTGCTTCCAGAGCTGGT
GGTTATATTTCTCGTACTGCTAGTCGTGTTGGTAACTCTATACGTAGCAGAGCTACTCGT
TATGCTAATCAAGGTTACAATTCCATGAGAAATGGTGCACAAAGAGCTGGCAACGGCGCA
CGTAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATGGTGCACAAAGAGCTGGCAAC
GGCGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGAGAGAAGGTGTCAATGAGATT
GGTGATGATATCGCCAATACTGCACATGATGTAGGTGATGGTTTCGCCAATACTGCACGT
GAAGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGATATGAACTCATTAAAGATGGA
GCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCTTAATTAAAATTAAAAAAGCA
CAACAAAGAATGGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAAGAAAGTGAAAGA
AGACGATTGCAAAGAAACAGAGAAAGACAAGAGCCAATTAGAACTTATACAACTGCACAA
GAAGCTCAACGATATATACCCAAACCGGTAACTTGCACGTAAAAGAGGG
sequence update 2002.10.25
Translated Amino Acid sequence
IQFNFINFLMAKLKIIIYIVIIFCSSIQFSFGYEKAIASFYPPPGDLHPTTHNFWACNSV
INQNGGFGPLECNNAGIYAIFSTANEIIDGNEYMLPLFYIGRSTIDVRDRIADHSRRNHV
DNDFIVCYMRFPALDDYGYSNKVTPVEQALLHQFKTQFNSWDNLGFDPQYDTA---

---NDQLIAIDVGIAGGAIVAGAGAAAAGAAAGAEGGAAGVASRAGGYISRTASRVGNSI
RSRATRYANQGYNSMRNGAQRAGNGARNYANEGYNSVRDGAQRAGNGARNYAQQGYQAWR
EGVNEIGDDIANTAHDVGDGFANTAREVGDGIRITAEEGYELIKDGAEETWVKKY*rlsl
ikikkaqqrmaeqeerrrlmqeeserrrlqrnrerqepirtyttaqeaqryipkpvtct*
kr


Translated Amino Acid sequence (All Frames)
Frame A:
iynlislif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqviciplliifghviv
sltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeiellitvdetm
limislcvicvsqhwmimvtvtk*hplnklsftnsklnsthgitsvlihsmil---

---NDQLIAIDVGIAGGAIVAGAGAAAAGAAAGAEGGAAGVASRAGGYISRTASRVGNSI
RSRATRYANQGYNSMRNGAQRAGNGARNYANEGYNSVRDGAQRAGNGARNYAQQGYQAWR
EGVNEIGDDIANTAHDVGDGFANTAREVGDGIRITAEEGYELIKDGAEETWVKKY*rlsl
ikikkaqqrmaeqeerrrlmqeeserrrlqrnrerqepirtyttaqeaqryipkpvtct*
kr

Frame B:
yti*fh*ffngktknnylycnnfl**ypiffwirkgdcfilstsr*fashys*flgm**c
h*pkrwirst*mq*crylcnfldrq*dhrr**ihastilywkihyrcsr*nc*sq*tkpc
***fhcvlyafpsig*lwlq*qsntr*tsspspiqnsiqlmg*prf*stv*yc---

---min*ll*mlvlqvvlslqalvqqqpvqqpvlrvvpqellpelvviflvllvvlvtly
vaellvmlikvtip*emvhkelatahvimlmkvtip*emvhkelatahvimlnkvikhge
kvsmrlvmispilhmm*vmvspilhvk*vmeleslqrrdmnslkmelkklg*rnikgyp*
lklkkhnkewlnkkkeeg*ckkkvkeddcketekdksqleliqlhkklndiypnr*lark
rg

Frame C:
IQFNFINFLMAKLKIIIYIVIIFCSSIQFSFGYEKAIASFYPPPGDLHPTTHNFWACNSV
INQNGGFGPLECNNAGIYAIFSTANEIIDGNEYMLPLFYIGRSTIDVRDRIADHSRRNHV
DNDFIVCYMRFPALDDYGYSNKVTPVEQALLHQFKTQFNSWDNLGFDPQYDTA---

---*sincyrcwycrwcyrcrrwcsssrcssrc*gwcrrscfqswwlyfsyc*scw*lyt
*qsyslc*srlqfhekwctkswqrrt*lc**rlqfrerwctkswqrrt*lcstrlssmer
rcq*dw**yrqyct*cr*wfrqyct*sr*wn*nhcrggi*th*rws*rnlgeeilkviln
*n*ksttkng*trrkkkvdarrk*kktiakkqrktran*nlynctrsstiytqtgnlhvk
e

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHD492 (CHD492Q) /CSM/CH/CHD4-D/CHD492Q.Seq.d/ 2109 0.0
SFK831 (SFK831Q) /CSM/SF/SFK8-B/SFK831Q.Seq.d/ 1116 0.0
SFK737 (SFK737Q) /CSM/SF/SFK7-B/SFK737Q.Seq.d/ 1116 0.0
SFK728 (SFK728Q) /CSM/SF/SFK7-B/SFK728Q.Seq.d/ 1116 0.0
SFJ141 (SFJ141Q) /CSM/SF/SFJ1-B/SFJ141Q.Seq.d/ 1116 0.0
SFH180 (SFH180Q) /CSM/SF/SFH1-D/SFH180Q.Seq.d/ 1116 0.0
SFG695 (SFG695Q) /CSM/SF/SFG6-D/SFG695Q.Seq.d/ 1116 0.0
SFF705 (SFF705Q) /CSM/SF/SFF7-A/SFF705Q.Seq.d/ 1116 0.0
SFF510 (SFF510Q) /CSM/SF/SFF5-A/SFF510Q.Seq.d/ 1116 0.0
SFF390 (SFF390Q) /CSM/SF/SFF3-D/SFF390Q.Seq.d/ 1116 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 109 7e-24 9
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 86 2e-17 9
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 32 0.007 9
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 36 0.008 11
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 34 0.011 10
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence. 40 0.014 12
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 34 0.017 13
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 40 0.029 11
AF466146|AF466146.1 Melipona bicolor mitochondrial genome, partial sequence. 32 0.055 6
BX248585|BX248585.1 Blochmannia floridanus complete genome; segment 2/3. 38 0.061 12
dna update 2004. 9.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ628940_1(AJ628940|pid:none) Pisum sativum mRNA for late embryo... 51 9e-05
Z69360_4(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c... 49 5e-04
AC146855_28(AC146855|pid:none) Medicago truncatula clone mth2-16... 49 5e-04
Z69360_3(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c... 49 5e-04
AM421808_498(AM421808|pid:none) Neisseria meningitidis serogroup... 49 5e-04
T21369(T21369)hypothetical protein F25H8.5a - Caenorhabditis ele... 47 0.001
AL844509_656(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 46 0.002
CT573213_2889(CT573213|pid:none) Frankia alni str. ACN14A chromo... 44 0.009
AB207257_1(AB207257|pid:none) Polypedilum vanderplanki PvLEA3 mR... 42 0.033
BT050559_1(BT050559|pid:none) Drosophila melanogaster AT13054 fu... 42 0.043
protein update 2009. 3.30
PSORT

psg: 0.87 gvh: 0.62 alm: 0.22 top: 0.30 tms: 0.13 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

44.0 %: endoplasmic reticulum
16.0 %: mitochondrial
8.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: nuclear

>> prediction for CHD492 is end

5' end seq. ID CHD492F
5' end seq.
>CHD492F.Seq
ATATACAATTTAATTTCATTAATTTTTTAATGGCAAAACTAAAAATAATTATTTATATTG
TAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTGCTTCAT
TTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTAATAGTG
TCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCTATGCAA
TTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTATTTTATA
TTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAAACCATG
TTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATGGTTACA
GTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAATTCAACT
CATGGGATAACCTCGGTTTTGATCCACAGTATGATACTGCTNNNNNNNNNN
Length of 5' end seq. 531
3' end seq. ID CHD492Z
3' end seq.
>CHD492Z.Seq
NNNNNNNNNNAATGATCAATTAATTGCTATAGATGTTGGTATTGCAGGTGGTGCTATCGT
TGCAGGCGCTGGTGCAGCAGCAGCCGGTGCAGCAGCCGGTGCTGAGGGTGGTGCCGCAGG
AGTTGCTTCCAGAGCTGGTGGTTATATTTCTCGTACTGCTAGTCGTGTTGGTAACTCTAT
ACGTAGCAGAGCTACTCGTTATGCTAATCAAGGTTACAATTCCATGAGAAATGGTGCACA
AAGAGCTGGCAACGGCGCACGTAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATGG
TGCACAAAGAGCTGGCAACGGCGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGAG
AGAAGGTGTCAATGAGATTGGTGATGATATCGCCAATACTGCACATGATGTAGGTGATGG
TTTCGCCAATACTGCACGTGAAGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGATA
TGAACTCATTAAAGATGGAGCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCTT
AATTAAAATTAAAAAAGCACAACAAAGAATGGCTGAACAAGAAGAAAGAAGAAGGTTGAT
GCAAGAAGAAAGTGAAAGAAGACGATTGCAAAGAAACAGAGAAAGACAAGAGCCAATTAG
AACTTATACAACTGCACAAGAAGCTCAACGATATATACCCAAACCGGTAACTTGCACGTA
AAAGAGGG
Length of 3' end seq. 728
Connected seq. ID CHD492P
Connected seq.
>CHD492P.Seq
ATATACAATTTAATTTCATTAATTTTTTAATGGCAAAACTAAAAATAATTATTTATATTG
TAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTGCTTCAT
TTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTAATAGTG
TCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCTATGCAA
TTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTATTTTATA
TTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAAACCATG
TTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATGGTTACA
GTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAATTCAACT
CATGGGATAACCTCGGTTTTGATCCACAGTATGATACTGCT----------AATGATCAA
TTAATTGCTATAGATGTTGGTATTGCAGGTGGTGCTATCGTTGCAGGCGCTGGTGCAGCA
GCAGCCGGTGCAGCAGCCGGTGCTGAGGGTGGTGCCGCAGGAGTTGCTTCCAGAGCTGGT
GGTTATATTTCTCGTACTGCTAGTCGTGTTGGTAACTCTATACGTAGCAGAGCTACTCGT
TATGCTAATCAAGGTTACAATTCCATGAGAAATGGTGCACAAAGAGCTGGCAACGGCGCA
CGTAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATGGTGCACAAAGAGCTGGCAAC
GGCGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGAGAGAAGGTGTCAATGAGATT
GGTGATGATATCGCCAATACTGCACATGATGTAGGTGATGGTTTCGCCAATACTGCACGT
GAAGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGATATGAACTCATTAAAGATGGA
GCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCTTAATTAAAATTAAAAAAGCA
CAACAAAGAATGGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAAGAAAGTGAAAGA
AGACGATTGCAAAGAAACAGAGAAAGACAAGAGCCAATTAGAACTTATACAACTGCACAA
GAAGCTCAACGATATATACCCAAACCGGTAACTTGCACGTAAAAGAGGG
Length of connected seq. 1239
Full length Seq ID -
Full length Seq. -
Length of full length seq. -