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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHD461
Library CH
(Link to library)
Clone ID CHD461
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15009-1
Original site URL
Representative seq. ID CHD461P
(Link to Original site)
Representative DNA sequence 
>CHD461 (CHD461Q) /CSM/CH/CHD4-C/CHD461Q.Seq.d/
AATTTAATTTTAATTTATTTTTATTTATATATATACNCACAACAATAAAGAAATAAAAGA
TGAAAAAAACGACATTTAGATTTTATCTTGTATTTTTATATGCAATATTAGTTTTATATA
TAGGTGGTATNGAAGATGCAATTTCAAATGGTGGGGCGATGGGATATGAACAACCAAAAA
CAAACTTTTATAATGGTGGTAATGGTAAAGCGGATTATAATGTTGAACATTTTTTCAGAG
GTGAACATACAAATAATTGGGCACCTTTTAGTTTGCACATCAAGATTTTGGTTTAACTAT
AGACATATAGCAAATGTATTAGGTTTTTATAGAACTGTTAAGAAATTAGGTATACCTGAT
TCACAAATTATATTAATGTTAGCAGATGATATGGCATGTAATCCTAGAAATTCATATGCT
GGTAGTATATTCAATAATGAAAATCATAAATTGAATTTATATGGTGATAATATTGAAGTT
GACTATAGAGGATATGAAGTTAATGTTGAAAATTTCATTAGAGTGTTAAXXXXXXXXXXG
CTGATGCTTTCAAACAAATGTGGGAAAAGAAAAGATATCATGAAATTTTATTCATGGTTG
ATACTTGTCAAGCTAATACATTATATACTCGTTTTAATTCTCCAAATATTTTAGCAATTG
GTTCAAGTAAATTTGGTGAAAATAGTTATTCTCATCATTCAGATCCAGAATTAGGGGTTG
CAGTTATTGATAGATTTACATATTATACATTGGAATTCTTTGAAAGTGTTGACCCACATA
ATGTAACATTATATCAATTGTTCAATACATATAGTCCACAAAAATTACAATCACATAGTG
AATATAGGACAGATTTATTCAATAGACCATTAGATCAAGTTCCTGTTACAGACTTTTTTG
GTTCTGTAATGAGAGCTGATTTAACTCCTTCAACAATTGTAAATGAAAAACAAAAAGATG
AAAAAGTAGAAAAAGATGAAACTACTGTAAATAATAATAATAATAATAATAACAACGATA
ATGTAAAAAAACAAACACCAAAAACTAAACAAATTTCATATAGAATTACAGAGAAACCAA
CATCAATCCAAGTACAAAATAACAAAGATAGTGAATTAAATCTTTTCAATTCAAAATTTA
TTACTTCAGCTTTAATATTTTTAGTAGTATTTGGATTACTTTCTTGGTCTTCTGATTTTG
TAAAATCAAATCTTATTTTAAATACAAATGATTTAAAAGATCGAAATCAAAATCAAAGCC
AATTTAAGTAATANATAAATAAATGNATAATAAATAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
nliliyfylyiyxqq*rnkr*kkrhldfilyfymqy*fyi*VVXKMQFQMVGRWDMNNQK
QTFIMVVMVKRIIMLNIFSEVNIQIIGHLLVCTSRFWFNYRHIANVLGFYRTVKKLGIPD
SQIILMLADDMACNPRNSYAGSIFNNENHKLNLYGDNIEVDYRGYEVNVENFIRVL---

---ADAFKQMWEKKRYHEILFMVDTCQANTLYTRFNSPNILAIGSSKFGENSYSHHSDPE
LGVAVIDRFTYYTLEFFESVDPHNVTLYQLFNTYSPQKLQSHSEYRTDLFNRPLDQVPVT
DFFGSVMRADLTPSTIVNEKQKDEKVEKDETTVNNNNNNNNNDNVKKQTPKTKQISYRIT
EKPTSIQVQNNKDSELNLFNSKFITSALIFLVVFGLLSWSSDFVKSNLILNTNDLKDRNQ
NQSQFK*xinkxiink
Translated Amino Acid sequence (All Frames) 
Frame A:
nliliyfylyiyxqq*rnkr*kkrhldfilyfymqy*fyi*VVXKMQFQMVGRWDMNNQK
QTFIMVVMVKRIIMLNIFSEVNIQIIGHLLVCTSRFWFNYRHIANVLGFYRTVKKLGIPD
SQIILMLADDMACNPRNSYAGSIFNNENHKLNLYGDNIEVDYRGYEVNVENFIRVL---

---ADAFKQMWEKKRYHEILFMVDTCQANTLYTRFNSPNILAIGSSKFGENSYSHHSDPE
LGVAVIDRFTYYTLEFFESVDPHNVTLYQLFNTYSPQKLQSHSEYRTDLFNRPLDQVPVT
DFFGSVMRADLTPSTIVNEKQKDEKVEKDETTVNNNNNNNNNDNVKKQTPKTKQISYRIT
EKPTSIQVQNNKDSELNLFNSKFITSALIFLVVFGLLSWSSDFVKSNLILNTNDLKDRNQ
NQSQFK*xinkxiink

Frame B:
i*f*fifiyiythnnkeikdekndi*ilscificnisfiyrwyxrcnfkwwgdgi*ttkn
kll*ww*w*sgl*c*tffqr*tyk*lgtf*fahqdfgltidi*qmy*vfiellrn*vyli
hkly*c*qmiwhvileihmlvvysimkiin*iymviilkltiedmklmlkislec*---

---lmlsnkcgkrkdimkfyswlilvklihyilvlilqif*qlvqvnlvkiviliiqiqn
*glqllidlhiihwnslkvlthim*hyincsihivhknynhivnigqiysidh*ikfllq
tflvl**eli*llqql*mknkkmkk*kkmkll*iiiiiiittim*knkhqklnkfhielq
rnqhqskykitkivn*ifsiqnlllql*yf**yldyflgllil*nqilf*iqmi*kieik
ikanlsnx*inx**i

Frame C:
fnfnlflfiyixttikk*kmkkttfrfylvflyailvlyiggxedaisnggamgyeqpkt
nfynggngkadynvehffrgehtnnwapfslhikilv*l*tyskcirfl*nc*eiryt*f
tnyinvsr*ygm*s*kficw*yiq**ks*iefiw**y*s*l*ri*s*c*kfh*sv---

---*cfqtnvgkekis*nfihg*ylss*yiiysf*fskyfsnwfk*iw*k*lfssfrsri
rgcsy**iyilyigil*kc*pt*cniisivqyi*stkitit**i*drfiq*tirssscyr
lfwfcnes*fnsfnnck*ktkr*ksrkr*nyck*******qr*ckktntkn*tnfi*nyr
etninpstk*qr**iksfqfkiyyfsfnifssiwitflvf*fckiksyfkyk*fkrsksk
skpi*vixk*mxnk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHD461 (CHD461Q) /CSM/CH/CHD4-C/CHD461Q.Seq.d/                       1695   0.0
SFL282 (SFL282Q) /CSM/SF/SFL2-D/SFL282Q.Seq.d/                        926   0.0
SFJ248 (SFJ248Q) /CSM/SF/SFJ2-B/SFJ248Q.Seq.d/                        926   0.0
CFB364 (CFB364Q) /CSM/CF/CFB3-C/CFB364Q.Seq.d/                        926   0.0
AFJ746 (AFJ746Q) /CSM/AF/AFJ7-B/AFJ746Q.Seq.d/                        926   0.0
SFD257 (SFD257Q) /CSM/SF/SFD2-C/SFD257Q.Seq.d/                        918   0.0
CFH296 (CFH296Q) /CSM/CF/CFH2-D/CFH296Q.Seq.d/                        916   0.0
CFH352 (CFH352Q) /CSM/CF/CFH3-C/CFH352Q.Seq.d/                        908   0.0
CFF820 (CFF820Q) /CSM/CF/CFF8-A/CFF820Q.Seq.d/                        902   0.0
VFB704 (VFB704Q) /CSM/VF/VFB7-A/VFB704Q.Seq.d/                        737   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI507800|BI507800.1 BB170001B10H11.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170001B10H11 5', mRNA sequence.    76   3e-36  5
BI515765|BI515765.1 BB160020A20B07.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160020A20B07 5', mRNA sequence.    76   2e-23  4
BI515788|BI515788.1 BB160020B10A08.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160020B10A08 5', mRNA sequence.    76   4e-23  4
AX488980|AX488980.1 Sequence 6280 from Patent WO02053728.          52   2e-16  4
AY557794|AY557794.1 Saccharomyces cerevisiae clone FLH002257.01X YDR331W gene, complete cds.    46   2e-13  5
BU835350|BU835350.1 T072G09 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    40   3e-09  3
BU824990|BU824990.1 UK102C04 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    40   3e-09  3
U32517|U32517.2 Saccharomyces cerevisiae chromosome IV cosmid 9798.    46   6e-08  5
CR382138|CR382138.1 Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces hansenii.    56   1e-07  2
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            32   3e-07  31
dna update 2004. 9.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382132_329(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...   171   5e-41
(P49018) RecName: Full=GPI-anchor transamidase;          Short=G...   161   4e-38
AK117596_1(AK117596|pid:none) Arabidopsis thaliana At1g08750 mRN...   159   3e-37
AY084883_1(AY084883|pid:none) Arabidopsis thaliana clone 120167 ...   159   3e-37
CR382138_1225(CR382138|pid:none) Debaryomyces hansenii chromosom...   157   7e-37
CR382138_1120(CR382138|pid:none) Debaryomyces hansenii strain CB...   157   7e-37
AE016817_700(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...   156   2e-36
FM992688_685(FM992688|pid:none) Candida dubliniensis CD36 chromo...   154   5e-36
CP000500_66(CP000500|pid:none) Pichia stipitis CBS 6054 chromoso...   154   8e-36
CR860289_1(CR860289|pid:none) Pongo abelii mRNA; cDNA DKFZp459A1...   142   4e-34
protein update 2009. 3.30
PSORT 

 psg: 0.69  gvh: 0.42  alm: 0.24  top: 0.47  tms: 0.13  mit: 0.28  mip: 0.12
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 24.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHD461 is mit
5' end seq. ID CHD461F
5' end seq. 
>CHD461F.Seq
AATTTAATTTTAATTTATTTTTATTTATATATATACNCACAACAATAAAGAAATAAAAGA
TGAAAAAAACGACATTTAGATTTTATCTTGTATTTTTATATGCAATATTAGTTTTATATA
TAGGTGGTATNGAAGATGCAATTTCAAATGGTGGGGCGATGGGATATGAACAACCAAAAA
CAAACTTTTATAATGGTGGTAATGGTAAAGCGGATTATAATGTTGAACATTTTTTCAGAG
GTGAACATACAAATAATTGGGCACCTTTTAGTTTGCACATCAAGATTTTGGTTTAACTAT
AGACATATAGCAAATGTATTAGGTTTTTATAGAACTGTTAAGAAATTAGGTATACCTGAT
TCACAAATTATATTAATGTTAGCAGATGATATGGCATGTAATCCTAGAAATTCATATGCT
GGTAGTATATTCAATAATGAAAATCATAAATTGAATTTATATGGTGATAATATTGAAGTT
GACTATAGAGGATATGAAGTTAATGTTGAAAATTTCATTAGAGTGTTAANNNNNNNNNN
Length of 5' end seq. 539
3' end seq. ID CHD461Z
3' end seq. 
>CHD461Z.Seq
NNNNNNNNNNGCTGATGCTTTCAAACAAATGTGGGAAAAGAAAAGATATCATGAAATTTT
ATTCATGGTTGATACTTGTCAAGCTAATACATTATATACTCGTTTTAATTCTCCAAATAT
TTTAGCAATTGGTTCAAGTAAATTTGGTGAAAATAGTTATTCTCATCATTCAGATCCAGA
ATTAGGGGTTGCAGTTATTGATAGATTTACATATTATACATTGGAATTCTTTGAAAGTGT
TGACCCACATAATGTAACATTATATCAATTGTTCAATACATATAGTCCACAAAAATTACA
ATCACATAGTGAATATAGGACAGATTTATTCAATAGACCATTAGATCAAGTTCCTGTTAC
AGACTTTTTTGGTTCTGTAATGAGAGCTGATTTAACTCCTTCAACAATTGTAAATGAAAA
ACAAAAAGATGAAAAAGTAGAAAAAGATGAAACTACTGTAAATAATAATAATAATAATAA
TAACAACGATAATGTAAAAAAACAAACACCAAAAACTAAACAAATTTCATATAGAATTAC
AGAGAAACCAACATCAATCCAAGTACAAAATAACAAAGATAGTGAATTAAATCTTTTCAA
TTCAAAATTTATTACTTCAGCTTTAATATTTTTAGTAGTATTTGGATTACTTTCTTGGTC
TTCTGATTTTGTAAAATCAAATCTTATTTTAAATACAAATGATTTAAAAGATCGAAATCA
AAATCAAAGCCAATTTAAGTAATANATAAATAAATGNATAATAAATAAA
Length of 3' end seq. 769
Connected seq. ID CHD461P
Connected seq. 
>CHD461P.Seq
AATTTAATTTTAATTTATTTTTATTTATATATATACNCACAACAATAAAGAAATAAAAGA
TGAAAAAAACGACATTTAGATTTTATCTTGTATTTTTATATGCAATATTAGTTTTATATA
TAGGTGGTATNGAAGATGCAATTTCAAATGGTGGGGCGATGGGATATGAACAACCAAAAA
CAAACTTTTATAATGGTGGTAATGGTAAAGCGGATTATAATGTTGAACATTTTTTCAGAG
GTGAACATACAAATAATTGGGCACCTTTTAGTTTGCACATCAAGATTTTGGTTTAACTAT
AGACATATAGCAAATGTATTAGGTTTTTATAGAACTGTTAAGAAATTAGGTATACCTGAT
TCACAAATTATATTAATGTTAGCAGATGATATGGCATGTAATCCTAGAAATTCATATGCT
GGTAGTATATTCAATAATGAAAATCATAAATTGAATTTATATGGTGATAATATTGAAGTT
GACTATAGAGGATATGAAGTTAATGTTGAAAATTTCATTAGAGTGTTAA----------G
CTGATGCTTTCAAACAAATGTGGGAAAAGAAAAGATATCATGAAATTTTATTCATGGTTG
ATACTTGTCAAGCTAATACATTATATACTCGTTTTAATTCTCCAAATATTTTAGCAATTG
GTTCAAGTAAATTTGGTGAAAATAGTTATTCTCATCATTCAGATCCAGAATTAGGGGTTG
CAGTTATTGATAGATTTACATATTATACATTGGAATTCTTTGAAAGTGTTGACCCACATA
ATGTAACATTATATCAATTGTTCAATACATATAGTCCACAAAAATTACAATCACATAGTG
AATATAGGACAGATTTATTCAATAGACCATTAGATCAAGTTCCTGTTACAGACTTTTTTG
GTTCTGTAATGAGAGCTGATTTAACTCCTTCAACAATTGTAAATGAAAAACAAAAAGATG
AAAAAGTAGAAAAAGATGAAACTACTGTAAATAATAATAATAATAATAATAACAACGATA
ATGTAAAAAAACAAACACCAAAAACTAAACAAATTTCATATAGAATTACAGAGAAACCAA
CATCAATCCAAGTACAAAATAACAAAGATAGTGAATTAAATCTTTTCAATTCAAAATTTA
TTACTTCAGCTTTAATATTTTTAGTAGTATTTGGATTACTTTCTTGGTCTTCTGATTTTG
TAAAATCAAATCTTATTTTAAATACAAATGATTTAAAAGATCGAAATCAAAATCAAAGCC
AATTTAAGTAATANATAAATAAATGNATAATAAATAAA
Length of connected seq. 1288
Full length Seq ID -
Full length Seq. -
Length of full length seq. -