CHD438 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHD438
Library	CH (Link to library)
Clone ID	CHD438 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16252-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHD4-B/CHD438Q.Seq.d/
Representative seq. ID	CHD438P (Link to Original site)
Representative DNA sequence	>CHD438 (CHD438Q) /CSM/CH/CHD4-B/CHD438Q.Seq.d/ ATATATCATTTTTTAAAATGAGCGTCATCAAATCAATTAAAGCCAGAGAAATTTTAGATT CACGTGGTAACCCAACTGTTGAAGTTGACCTTTACACCGAAAAAGATGGTGTTGTTTCAT CATTCAGAGCTGCAGTTCCATCAGGTGCATCAACTGGTATTTATGAAGCTGTTGAATTAA GAGATGGTGATAAATCAAGATACTTAGGTAAAGGTGTACTCAAAGCAATCAAAAACATTC TCGAAGTCATTCAACCAGCCGTCATTGGTAAATCAGTTTCCGATCAAGCTGCTATCGATA AATTAATGATCGATCTCGATGGTACCCCAAATAAAGGTAAATTAGGTGCCAACGCTATCC TTGCAGTCAGTTTAGCTGTTTGCAGAGCTGGTGCTGCTGATAGAAATTTACCACTTTACA AATATATCTCAGAAATTGCAGGTACTAAAATGAGATTACCAGTTCCAGCATTCAATGTTA TCAATGGTGGTTCACATGCAGGTAATAAATTAGCTATGCAAGAATTTATGATTTTACCAG TTGGTGCTAAAGATTTCAATGAAGCCTATCGTATGGGTTCAGAAGTTXXXXXXXXXXTCG CTCCACCAATTCAAAGCAACAAAGAAGGTCTTGAACTCTTAAAACTTGCCATTGAAAAAG CTGGTTACACAGGTTTAGTTAAAATTGGTATGGATTGTGCTGCCTCTGAATTCAAAGTTG AAAATGGTTACGATCTTGACTTCAAAACTAAAAACAATGACGGTTCAGCTGTTATCTCTG GTGAAAAATTAGGTGATCTCTACAGAGAATTCATTAAAGAATATCCAATCATTTCAATTG AAGATCCATTTGATCAAGATGATTGGGAATCATACACTAAATTAACAGCATCAGTTGATA TTCAAATTGTTGGTGATGATTTACTTGTTACCAACCCAGAAAGAATTAAGACTGGTATTG AAAAGAAAGCATGTAATGCTCTTTTATTAAAAGTTAACCAAATTGGTTCAGTCACTGAAT CAATTCGTGCCGCTCTTGACTCAAAGAATGCATCATGGGGTGTCATGGTTAGCCATCGTT CAGGTGAAACTGAAGATACCTTCATTGCTGATTTAGTTGTTGGTTTAGGTACTGGTCAAA TTAAAACTGGTGCTCCATGTAGATCAGAAAGATTAGCCAAATACAATCAACTTGTTAGAA TTAACGAAGAGTTAGGTGAAAACCATAACTATGCTGGTTTAACTTTCCGTAAATTTTAAT TTACTCATAATATGNAAACAAAAC
sequence update	2002.10.25
Translated Amino Acid sequence	ISFFKMSVIKSIKAREILDSRGNPTVEVDLYTEKDGVVSSFRAAVPSGASTGIYEAVELR DGDKSRYLGKGVLKAIKNILEVIQPAVIGKSVSDQAAIDKLMIDLDGTPNKGKLGANAIL AVSLAVCRAGAADRNLPLYKYISEIAGTKMRLPVPAFNVINGGSHAGNKLAMQEFMILPV GAKDFNEAYRMGSEV--- ---APPIQSNKEGLELLKLAIEKAGYTGLVKIGMDCAASEFKVENGYDLDFKTKNNDGSA VISGEKLGDLYREFIKEYPIISIEDPFDQDDWESYTKLTASVDIQIVGDDLLVTNPERIK TGIEKKACNALLLKVNQIGSVTESIRAALDSKNASWGVMVSHRSGETEDTFIADLVVGLG TGQIKTGAPCRSERLAKYNQLVRINEELGENHNYAGLTFRKF*fthnmxtk
Translated Amino Acid sequence (All Frames)	Frame A: iyhflkassnqlkpekfihvvtqllkltftpkkmvlfhhselqfhqvhqlvfmklln* emvinqdtvkvyskqsktfsksfnqpslvnqfpikllsinsismvpqikvnvptls lqsvlfaelvllieiyhftnisqklqvlkdyqfqhsmlsmvvhmqvinlcknlfyq lvlkismkpivwvqk--- ---slhqfkatkkvlnsnlplkklvtqvlklvwivlplnsklkmvtiltsklktmtvq llslvknvistenslkniqsfqlkihlikmignhtlnqhqlifkllvmiyllptqkel rlvlkrkhvmlfykltklvqslnqfvplltqrmhhgvswlaivqvklkipsllillv* vlvklklvlhvdqkdpntinlleltksvktitmlvlsvnfnlliixkqn Frame B: yiifnerhqinsqrnfrftwpncsplhrkrwccfiiqscssircinwylscik rw*ikilrrctqsnqkhsrshstsrhwisfrsscyrindrsrwypkrircqryp csqfsclqswcc*kfttlqiylrncryneitsssiqcyqwwftcr*isyariydfts wcrfqslsygfrs--- ---rstnskqqrrstlktchkswlhrfsnwyglccliqskwlrslqnkqrfs cylwkirslqrihrisnhfnrsisrlgiihinsisysncwftcyqprkn dwykesmcsfikspnwfshinscrslkecimgchgpsfrnrylhcfscwfr ywsnnwcsmirkisqiqstcnrrvrkplcwfnfpiliysyxnk Frame C: ISFFKMSVIKSIKAREILDSRGNPTVEVDLYTEKDGVVSSFRAAVPSGASTGIYEAVELR DGDKSRYLGKGVLKAIKNILEVIQPAVIGKSVSDQAAIDKLMIDLDGTPNKGKLGANAIL AVSLAVCRAGAADRNLPLYKYISEIAGTKMRLPVPAFNVINGGSHAGNKLAMQEFMILPV GAKDFNEAYRMGSEV--- ---APPIQSNKEGLELLKLAIEKAGYTGLVKIGMDCAASEFKVENGYDLDFKTKNNDGSA VISGEKLGDLYREFIKEYPIISIEDPFDQDDWESYTKLTASVDIQIVGDDLLVTNPERIK TGIEKKACNALLLKVNQIGSVTESIRAALDSKNASWGVMVSHRSGETEDTFIADLVVGLG TGQIKTGAPCRSERLAKYNQLVRINEELGENHNYAGLTFRKFfthnmxtk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHD438 (CHD438Q) /CSM/CH/CHD4-B/CHD438Q.Seq.d/ 2480 0.0 VFE233 (VFE233Q) /CSM/VF/VFE2-B/VFE233Q.Seq.d/ 1342 0.0 SFE744 (SFE744Q) /CSM/SF/SFE7-B/SFE744Q.Seq.d/ 1342 0.0 CHB226 (CHB226Q) /CSM/CH/CHB2-B/CHB226Q.Seq.d/ 1342 0.0 AFK881 (AFK881Q) /CSM/AF/AFK8-D/AFK881Q.Seq.d/ 1342 0.0 AFH824 (AFH824Q) /CSM/AF/AFH8-A/AFH824Q.Seq.d/ 1342 0.0 AFG692 (AFG692Q) /CSM/AF/AFG6-D/AFG692Q.Seq.d/ 1342 0.0 SFC169 (SFC169Q) /CSM/SF/SFC1-C/SFC169Q.Seq.d/ 1340 0.0 AFC723 (AFC723Q) /CSM/AF/AFC7-A/AFC723Q.Seq.d/ 1334 0.0 VFL491 (VFL491Q) /CSM/VF/VFL4-D/VFL491Q.Seq.d/ 1328 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N X80474\|X80474.1 N.frontalis enolase gene. 64 2e-64 11 Y17298\|Y17298.1 Cunninghamella elegans mRNA for enolase. 86 3e-63 10 AY522934\|AY522934.1 Artemia sp. SBH266677 2-phospho-D-glycerate hydrolase mRNA, partial cds. 70 5e-58 8 BD183626\|BD183626.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium. 76 1e-57 9 BD183625\|BD183625.1 Material for diagnosing malaria and immune antigen for suppressing growth of plasmodium. 76 1e-57 9 AB026051\|AB026051.1 Plasmodium falciparum mRNA for enolase, complete cds. 76 1e-57 9 CN587505\|CN587505.1 USDA-FP_130580 Acyrthosiphon pisum, Pea Aphid Acyrthosiphon pisum cDNA clone WHAP098_G04, mRNA sequence. 101 8e-57 4 U00152\|U00152.1 Plasmodium falciparum enolase gene complete cds. 76 1e-55 8 BM165201\|BM165201.1 EST567724 PyBS Plasmodium yoelii yoelii cDNA clone PYCMI87 5' end, mRNA sequence. 92 2e-46 4 CN756890\|CN756890.1 ID0AAA19DG07RM1 ApMS Acyrthosiphon pisum cDNA clone ID0AAA19DG07 5', mRNA sequence. 100 8e-43 4
dna update	2004. 9.19
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54RK5) RecName: Full=Enolase A; EC=4.2.1.11; AltName:... 784 0.0 EF137905_1(EF137905\|pid:none) Helianthus annuus plastid enolase ... 561 e-158 AC016662_10(AC016662\|pid:none) Arabidopsis thaliana chromosome 1... 551 e-155 AK243111_1(AK243111\|pid:none) Oryza sativa Japonica Group cDNA, ... 541 e-152 BC045082_1(BC045082\|pid:none) Xenopus laevis enolase 3, beta mus... 540 e-152 DQ497988_1(DQ497988\|pid:none) Polypterus senegalus enolase B mRN... 539 e-152 BC096516_1(BC096516\|pid:none) Xenopus tropicalis hypothetical pr... 539 e-152 (P26300) RecName: Full=Enolase; EC=4.2.1.11; AltName: F... 538 e-151 EU964132_1(EU964132\|pid:none) Zea mays clone 276124 enolase mRNA... 537 e-151 T12341(T12341) phosphopyruvate hydratase (EC 4.2.1.11) - common ... 536 e-151
protein update	2009. 3.30
PSORT	psg: 0.57 gvh: 0.46 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: cytoplasmic 28.0 %: mitochondrial 20.0 %: nuclear 4.0 %: plasma membrane 4.0 %: peroxisomal >> prediction for CHD438 is cyt
5' end seq. ID	CHD438F
5' end seq.	>CHD438F.Seq ATATATCATTTTTTAAAATGAGCGTCATCAAATCAATTAAAGCCAGAGAAATTTTAGATT CACGTGGTAACCCAACTGTTGAAGTTGACCTTTACACCGAAAAAGATGGTGTTGTTTCAT CATTCAGAGCTGCAGTTCCATCAGGTGCATCAACTGGTATTTATGAAGCTGTTGAATTAA GAGATGGTGATAAATCAAGATACTTAGGTAAAGGTGTACTCAAAGCAATCAAAAACATTC TCGAAGTCATTCAACCAGCCGTCATTGGTAAATCAGTTTCCGATCAAGCTGCTATCGATA AATTAATGATCGATCTCGATGGTACCCCAAATAAAGGTAAATTAGGTGCCAACGCTATCC TTGCAGTCAGTTTAGCTGTTTGCAGAGCTGGTGCTGCTGATAGAAATTTACCACTTTACA AATATATCTCAGAAATTGCAGGTACTAAAATGAGATTACCAGTTCCAGCATTCAATGTTA TCAATGGTGGTTCACATGCAGGTAATAAATTAGCTATGCAAGAATTTATGATTTTACCAG TTGGTGCTAAAGATTTCAATGAAGCCTATCGTATGGGTTCAGAAGTTNNNNNNNNNN
Length of 5' end seq.	597
3' end seq. ID	CHD438Z
3' end seq.	>CHD438Z.Seq NNNNNNNNNNTCGCTCCACCAATTCAAAGCAACAAAGAAGGTCTTGAACTCTTAAAACTT GCCATTGAAAAAGCTGGTTACACAGGTTTAGTTAAAATTGGTATGGATTGTGCTGCCTCT GAATTCAAAGTTGAAAATGGTTACGATCTTGACTTCAAAACTAAAAACAATGACGGTTCA GCTGTTATCTCTGGTGAAAAATTAGGTGATCTCTACAGAGAATTCATTAAAGAATATCCA ATCATTTCAATTGAAGATCCATTTGATCAAGATGATTGGGAATCATACACTAAATTAACA GCATCAGTTGATATTCAAATTGTTGGTGATGATTTACTTGTTACCAACCCAGAAAGAATT AAGACTGGTATTGAAAAGAAAGCATGTAATGCTCTTTTATTAAAAGTTAACCAAATTGGT TCAGTCACTGAATCAATTCGTGCCGCTCTTGACTCAAAGAATGCATCATGGGGTGTCATG GTTAGCCATCGTTCAGGTGAAACTGAAGATACCTTCATTGCTGATTTAGTTGTTGGTTTA GGTACTGGTCAAATTAAAACTGGTGCTCCATGTAGATCAGAAAGATTAGCCAAATACAAT CAACTTGTTAGAATTAACGAAGAGTTAGGTGAAAACCATAACTATGCTGGTTTAACTTTC CGTAAATTTTAATTTACTCATAATATGNAAACAAAAC
Length of 3' end seq.	697
Connected seq. ID	CHD438P
Connected seq.	>CHD438P.Seq ATATATCATTTTTTAAAATGAGCGTCATCAAATCAATTAAAGCCAGAGAAATTTTAGATT CACGTGGTAACCCAACTGTTGAAGTTGACCTTTACACCGAAAAAGATGGTGTTGTTTCAT CATTCAGAGCTGCAGTTCCATCAGGTGCATCAACTGGTATTTATGAAGCTGTTGAATTAA GAGATGGTGATAAATCAAGATACTTAGGTAAAGGTGTACTCAAAGCAATCAAAAACATTC TCGAAGTCATTCAACCAGCCGTCATTGGTAAATCAGTTTCCGATCAAGCTGCTATCGATA AATTAATGATCGATCTCGATGGTACCCCAAATAAAGGTAAATTAGGTGCCAACGCTATCC TTGCAGTCAGTTTAGCTGTTTGCAGAGCTGGTGCTGCTGATAGAAATTTACCACTTTACA AATATATCTCAGAAATTGCAGGTACTAAAATGAGATTACCAGTTCCAGCATTCAATGTTA TCAATGGTGGTTCACATGCAGGTAATAAATTAGCTATGCAAGAATTTATGATTTTACCAG TTGGTGCTAAAGATTTCAATGAAGCCTATCGTATGGGTTCAGAAGTT----------TCG CTCCACCAATTCAAAGCAACAAAGAAGGTCTTGAACTCTTAAAACTTGCCATTGAAAAAG CTGGTTACACAGGTTTAGTTAAAATTGGTATGGATTGTGCTGCCTCTGAATTCAAAGTTG AAAATGGTTACGATCTTGACTTCAAAACTAAAAACAATGACGGTTCAGCTGTTATCTCTG GTGAAAAATTAGGTGATCTCTACAGAGAATTCATTAAAGAATATCCAATCATTTCAATTG AAGATCCATTTGATCAAGATGATTGGGAATCATACACTAAATTAACAGCATCAGTTGATA TTCAAATTGTTGGTGATGATTTACTTGTTACCAACCCAGAAAGAATTAAGACTGGTATTG AAAAGAAAGCATGTAATGCTCTTTTATTAAAAGTTAACCAAATTGGTTCAGTCACTGAAT CAATTCGTGCCGCTCTTGACTCAAAGAATGCATCATGGGGTGTCATGGTTAGCCATCGTT CAGGTGAAACTGAAGATACCTTCATTGCTGATTTAGTTGTTGGTTTAGGTACTGGTCAAA TTAAAACTGGTGCTCCATGTAGATCAGAAAGATTAGCCAAATACAATCAACTTGTTAGAA TTAACGAAGAGTTAGGTGAAAACCATAACTATGCTGGTTTAACTTTCCGTAAATTTTAAT TTACTCATAATATGNAAACAAAAC
Length of connected seq.	1274
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas