CHD405
Library CH
(Link to library)
Clone ID CHD405
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15984-1
Original site URL
Representative seq. ID CHD405E
(Link to Original site)
Representative DNA sequence
>CHD405 (CHD405Q) /CSM/CH/CHD4-A/CHD405Q.Seq.d/
ATTTTTCTCACACACACAAAAAACAAACTCATACAAAATTTAATATACAGTCACAATGAA
TACAAATATTAATGTTAATGGTAGTAATTACCACCCATATATTAGAGATTATAACAACGA
AAACAATAATAATAATAATGGAAGGAATAATAATACCAACAATAATAATAATGGTCGTTA
TAATAATAATAACAATAATAACAACAATAACAACAATAACAATTATAATCTAAATATGAA
TAGTACTGGTGGAAGTGGTGGCAGTGGTAGTTCATACAGTTACAGTAGAAGTGTAAATAG
AAATGGTGTAAACTATAATATGAACTATAATAACAACAATGGTTATAACAATAATAATTT
TAATAATAATTATAATGGTCAAAACTATAATGGTAATTTTAATTACAACAACAACAATAA
TAATCTCAATTATAATTATAATAATAATAATAATCATTACATTGGAAGTGGAACCAACAA
TAATAATAACAACAATAATAATAACAACAACAATAATAACAACAATAACAACAATAATAA
TAATTTTAACTATAATTATAATAGAAATTTTAATAATAACAATAATAGAGGTTATGGAAA
TAATAGAAATATTAATATTAATAATAACAACAACAATAGACTTTTNCAAAATCAAAATCA
AAATCAACAAAAGTATTACTTTAAATCATCATTTNTTGAAGACCCATGGAANAAAACCCA
ACATCCGTTACCAGATAATTGCATAGNNCCNCATGATGGAAATAGTAATGTTACAGNAAC
AGTAACNCCNAANAGTTATTCCTATTCATCATCTTCAAGTTCAATTCAGCCNTTTAATGA
TGAAAACGAAATAACCNTTGATAGTGATGATGAAAANATCGATAGAACTAGNAACNATAA
CNACNATAATAACNACNACNATAATAATAG
sequence update 2002.10.27
Translated Amino Acid sequence
ffshtqktnsyki*YTVTMNTNINVNGSNYHPYIRDYNNENNNNNNGRNNNTNNNNNGRY
NNNNNNNNNNNNNNYNLNMNSTGGSGGSGSSYSYSRSVNRNGVNYNMNYNNNNGYNNNNF
NNNYNGQNYNGNFNYNNNNNNLNYNYNNNNNHYIGSGTNNNNNNNNNNNNNNNNNNNNNN
NFNYNYNRNFNNNNNRGYGNNRNININNNNNNRLXQNQNQNQQKYYFKSSFXEDPWXKTQ
HPLPDNCIXPHDGNSNVTXTVTPXSYSYSSSSSSIQPFNDENEITXDSDDEXIDRTXNXN
XXNNXXXNN


Translated Amino Acid sequence (All Frames)
Frame A:
iflthtknkliqnliyshneyky*c*w**lppiy*rl*qrkq****wke**yqq***wsl
****q**qq*qq*ql*skye*ywwkwwqw*fiqlq*kck*kwckl*yel**qqwl*q**f
***l*wskl*w*f*lqqqq**sql*l*****slhwkwnqq***qq***qqq**qq*qq**
*f*l*l**kf***q**rlwk**ky*y***qqq*tfxkskskstkvll*iiix*rpmexnp
tsvtr*lhxxx*wk**cyxnsnxxxlflfiifkfnsax***krnnx*****kxr*n*xx*
xx**xxx***


Frame B:
ffshtqktnsyki*YTVTMNTNINVNGSNYHPYIRDYNNENNNNNNGRNNNTNNNNNGRY
NNNNNNNNNNNNNNYNLNMNSTGGSGGSGSSYSYSRSVNRNGVNYNMNYNNNNGYNNNNF
NNNYNGQNYNGNFNYNNNNNNLNYNYNNNNNHYIGSGTNNNNNNNNNNNNNNNNNNNNNN
NFNYNYNRNFNNNNNRGYGNNRNININNNNNNRLXQNQNQNQQKYYFKSSFXEDPWXKTQ
HPLPDNCIXPHDGNSNVTXTVTPXSYSYSSSSSSIQPFNDENEITXDSDDEXIDRTXNXN
XXNNXXXNN


Frame C:
fshthkkqthtkfniqsq*iqilmlmvvitthileiittktiiiimegiiiptiiimvvi
iiitiittittitiii*i*ivlvevvavvvhtvtvev*iemv*tii*tiittmvitiiil
iiiimvktimvilittttiiisiiiiiiiiiitleveptiiittiiitttiittittiii
iltiiiieiliitiievmeiieililiitttidfxkikikinksitlnhhxlkthgxkpn
iryqiia*xxmmeivmlqxq*xxxvipihhlqvqfsxlmmktk*plivmmkxsielxtit
tiitttiii


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFI712 (SFI712Q) /CSM/SF/SFI7-A/SFI712Q.Seq.d/ 583 e-165
CHD405 (CHD405Q) /CSM/CH/CHD4-A/CHD405Q.Seq.d/ 583 e-165
CFB286 (CFB286Q) /CSM/CF/CFB2-D/CFB286Q.Seq.d/ 577 e-163
CFH638 (CFH638Q) /CSM/CF/CFH6-B/CFH638Q.Seq.d/ 567 e-160
CHC451 (CHC451Q) /CSM/CH/CHC4-C/CHC451Q.Seq.d/ 541 e-153
CFA383 (CFA383Q) /CSM/CF/CFA3-D/CFA383Q.Seq.d/ 519 e-146
CFB171 (CFB171Q) /CSM/CF/CFB1-C/CFB171Q.Seq.d/ 422 e-117
SFI196 (SFI196Q) /CSM/SF/SFI1-D/SFI196Q.Seq.d/ 246 5e-64
CHQ352 (CHQ352Q) /CSM/CH/CHQ3-C/CHQ352Q.Seq.d/ 246 5e-64
SFI603 (SFI603Q) /CSM/SF/SFI6-A/SFI603Q.Seq.d/ 238 1e-61

own update 2002.11.20
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 42 3e-11 9
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 50 4e-11 11
CK417372|CK417372.1 AUF_IpInt_56_d19 Intestine cDNA library Ictalurus punctatus cDNA 5', mRNA sequence. 48 4e-08 2
AE014836|AE014836.1 Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence. 48 1e-07 9
CR753895|CR753895.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-114A12. 54 3e-07 7
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 46 4e-07 15
BX663528|BX663528.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 56 1e-06 2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 44 2e-06 14
BX470154|BX470154.5 Zebrafish DNA sequence from clone CH211-81N22. 52 2e-06 5
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 52 4e-06 11
dna update 2004. 9.19
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 421,761,625
protein update 2009. 4.12
PSORT

psg: 0.79 gvh: 0.23 alm: 0.64 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
32.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for CHD405 is nuc

5' end seq. ID CHD405F
5' end seq.
>CHD405F.Seq
ATTTTTCTCACACACACAAAAAACAAACTCATACAAAATTTAATATACAGTCACAATGAA
TACAAATATTAATGTTAATGGTAGTAATTACCACCCATATATTAGAGATTATAACAACGA
AAACAATAATAATAATAATGGAAGGAATAATAATACCAACAATAATAATAATGGTCGTTA
TAATAATAATAACAATAATAACAACAATAACAACAATAACAATTATAATCTAAATATGAA
TAGTACTGGTGGAAGTGGTGGCAGTGGTAGTTCATACAGTTACAGTAGAAGTGTAAATAG
AAATGGTGTAAACTATAATATGAACTATAATAACAACAATGGTTATAACAATAATAATTT
TAATAATAATTATAATGGTCAAAACTATAATGGTAATTTTAATTACAACAACAACAATAA
TAATCTCAATTATAATTATAATAATAATAATAATCATTACATTGGAAGTGGAACCAACAA
TAATAATAACAACAATAATAATAACAACAACAATAATAACAACAATAACAACAATAATAA
TAATTTTAACTATAATTATAATAGAAATTTTAATAATAACAATAATAGAGGTTATGGAAA
TAATAGAAATATTAATATTAATAATAACAACAACAATAGACNNNNNNNNNN
Length of 5' end seq. 651
3' end seq. ID CHD405Z
3' end seq.
>CHD405Z.Seq
NNNNNNNNNNACAATAATAATAATTTTAACTATAATTATAATAGAAATTTTAATAATAAC
AATAATAGAGGTTATGGAAATAATAGAAATATTAATATTAATAATAACAACAACAATAGA
CTTTTNCAAAATCAAAATCAAAATCAACAAAAGTATTACTTTAAATCATCATTTNTTGAA
GACCCATGGAANAAAACCCAACATCCGTTACCAGATAATTGCATAGNNCCNCATGATGGA
AATAGTAATGTTACAGNAACAGTAACNCCNAANAGTTATTCCTATTCATCATCTTCAAGT
TCAATTCAGCCNTTTAATGATGAAAACGAAATAACCNTTGATAGTGATGATGAAAANATC
GATAGAACTAGNAACNATAACNACNATAATAACNACNACNATAATAATAG
Length of 3' end seq. 410
Connected seq. ID CHD405P
Connected seq.
>CHD405P.Seq
ATTTTTCTCACACACACAAAAAACAAACTCATACAAAATTTAATATACAGTCACAATGAA
TACAAATATTAATGTTAATGGTAGTAATTACCACCCATATATTAGAGATTATAACAACGA
AAACAATAATAATAATAATGGAAGGAATAATAATACCAACAATAATAATAATGGTCGTTA
TAATAATAATAACAATAATAACAACAATAACAACAATAACAATTATAATCTAAATATGAA
TAGTACTGGTGGAAGTGGTGGCAGTGGTAGTTCATACAGTTACAGTAGAAGTGTAAATAG
AAATGGTGTAAACTATAATATGAACTATAATAACAACAATGGTTATAACAATAATAATTT
TAATAATAATTATAATGGTCAAAACTATAATGGTAATTTTAATTACAACAACAACAATAA
TAATCTCAATTATAATTATAATAATAATAATAATCATTACATTGGAAGTGGAACCAACAA
TAATAATAACAACAATAATAATAACAACAACAATAATAACAACAATAACAACAATAATAA
TAATTTTAACTATAATTATAATAGAAATTTTAATAATAACAATAATAGAGGTTATGGAAA
TAATAGAAATATTAATATTAATAATAACAACAACAATAGAC----------ACAATAATA
ATAATTTTAACTATAATTATAATAGAAATTTTAATAATAACAATAATAGAGGTTATGGAA
ATAATAGAAATATTAATATTAATAATAACAACAACAATAGACTTTTNCAAAATCAAAATC
AAAATCAACAAAAGTATTACTTTAAATCATCATTTNTTGAAGACCCATGGAANAAAACCC
AACATCCGTTACCAGATAATTGCATAGNNCCNCATGATGGAAATAGTAATGTTACAGNAA
CAGTAACNCCNAANAGTTATTCCTATTCATCATCTTCAAGTTCAATTCAGCCNTTTAATG
ATGAAAACGAAATAACCNTTGATAGTGATGATGAAAANATCGATAGAACTAGNAACNATA
ACNACNATAATAACNACNACNATAATAATAG
Length of connected seq. 1041
Full length Seq ID CHD405E
Full length Seq.
>CHD405E.Seq
ATTTTTCTCACACACACAAAAAACAAACTCATACAAAATTTAATATACAGTCACAATGAA
TACAAATATTAATGTTAATGGTAGTAATTACCACCCATATATTAGAGATTATAACAACGA
AAACAATAATAATAATAATGGAAGGAATAATAATACCAACAATAATAATAATGGTCGTTA
TAATAATAATAACAATAATAACAACAATAACAACAATAACAATTATAATCTAAATATGAA
TAGTACTGGTGGAAGTGGTGGCAGTGGTAGTTCATACAGTTACAGTAGAAGTGTAAATAG
AAATGGTGTAAACTATAATATGAACTATAATAACAACAATGGTTATAACAATAATAATTT
TAATAATAATTATAATGGTCAAAACTATAATGGTAATTTTAATTACAACAACAACAATAA
TAATCTCAATTATAATTATAATAATAATAATAATCATTACATTGGAAGTGGAACCAACAA
TAATAATAACAACAATAATAATAACAACAACAATAATAACAACAATAACAACAATAATAA
TAATTTTAACTATAATTATAATAGAAATTTTAATAATAACAATAATAGAGGTTATGGAAA
TAATAGAAATATTAATATTAATAATAACAACAACAATAGACTTTTNCAAAATCAAAATCA
AAATCAACAAAAGTATTACTTTAAATCATCATTTNTTGAAGACCCATGGAANAAAACCCA
ACATCCGTTACCAGATAATTGCATAGNNCCNCATGATGGAAATAGTAATGTTACAGNAAC
AGTAACNCCNAANAGTTATTCCTATTCATCATCTTCAAGTTCAATTCAGCCNTTTAATGA
TGAAAACGAAATAACCNTTGATAGTGATGATGAAAANATCGATAGAACTAGNAACNATAA
CNACNATAATAACNACNACNATAATAATAG
Length of full length seq. 930