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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHD313
Library CH
(Link to library)
Clone ID CHD313
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16561-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHD313 (CHD313Q) /CSM/CH/CHD3-A/CHD313Q.Seq.d/
XXXXXXXXXXAAGTTGAAGGTAGNGTCANCATTNAGAATGTATAGGCAAAAGATTCAAGA
AAATAAGGTNTNCCTCCAGATCAACATCGTNTCATTTTCGCTGGTNACAATTAGAAGATG
GTCGTACTCTCTCTGATTACAATATCCNAAAAGCATCATCTCTCCCCCTTGGTCCTCANA
TTAAGAGGTGGTATGCCAATNTNTGTCAANACATGTTGTGGTAANACCATCACTCNTGNA
GTTNAGGGCTNANATAANATTANNAATGTTCAACACAAAAGATTCNAGGCAAAGAAGGTA
TCCCNCCAGNCCAACAAAGATTGNTTTTNNTTGGTNAACAATTAGAAGATGGTGGTACTC
TATCTGATNACNACATTCNAAAGNAATCCACTCTCCATTTAGTCCTNAGATTAATAGTGT
GGTATGCAAATTTTTGTCNANACCGTCANTGGTAANANTATNNCNCTNNAAGTTNAAGGT
TTTGATAACATTGAGAATGTTAAAGGCCAAAANNCAANACAAAGAAGGTATTCCNCCAGA
TCAACAACGTGGTCATTTTCGCCGGTAGTCAATTGGAGGATGGTCGTACTCTCTNTGATT
NCAACATTCNAAAGGAATCCNCTCTCCANTTAGTTCNCAGATTAAGAGGTGGTATGCANA
NTTTTGNNAAAACNNTCACTGGTAAAACCATNACACTNNAAGTTNAAGGTAGTGACANCA
TTGNGAATGTAAAAACNAAAATTCNANACNAAGAAGGTATCCCACCAGATCAACAACGTC
TCATTTTCGCCGGTAAACAATTAGAAGATGGTCG
sequence update 2002. 9.10
Translated Amino Acid sequence 
---s*r*xxhxecigkrfkkirxxsrstsxhfrwxqledgrtlsdynixkasslplgpxi
krwyanxcqxmlw*xhhsxsxglx*xxxcstqkixgkegippxqqrlxxxgxqledggtl
sdxxixkxstlhlvlrlivwyanfcxxrxw*xyxxxsxrf**h*ec*RPKXXTKKVFXQI
NNVVIFAGSQLEDGRTLXDXNIXKESXLXLVXRLRGGMXXFXKTXTGKTXTLXVXGSDXI
XNVKTKIXXXEGIPPDQQRLIFAGKQLEDG
Translated Amino Acid sequence (All Frames) 
Frame A:
---s*r*xxhxecigkrfkkirxxsrstsxhfrwxqledgrtlsdynixkasslplgpxi
krwyanxcqxmlw*xhhsxsxglx*xxxcstqkixgkegippxqqrlxxxgxqledggtl
sdxxixkxstlhlvlrlivwyanfcxxrxw*xyxxxsxrf**h*ec*RPKXXTKKVFXQI
NNVVIFAGSQLEDGRTLXDXNIXKESXLXLVXRLRGGMXXFXKTXTGKTXTLXVXGSDXI
XNVKTKIXXXEGIPPDQQRLIFAGKQLEDG


Frame B:
---vegxvxixnv*akdsrk*gxppdqhrxifagxn*kmvvlslitisxkhhlsplvlxl
rggmpxxvxtccgxtitxxvxgxxxixnvqhkrfxakkvsxqxnkdxfxlvnn*kmvvly
lxttfxxnplsi*sxd**cgmqifvxtvxgxxxxlxvxgfdnienvkgqxxxqrrysxrs
ttwsfspvvnwrmvvlsxixtfxrnplsx*fxd*evvcxxlxkxslvkpxhxkxkvvtxl
xm*kxkfxtkkvshqinnvsfspvnn*kmv


Frame C:
---lkvxsxxrmyrqkiqenkvxlqinivsfslvtirrwsysl*lqypksiisppwssx*
evvcqxxsxhvvvxpslxxxraxixlxmfntkdsrqrrypxxptkixfxwxtirrwwysi
*xxhskxihspfspxinsvvckflsxpsxvxxxxxkxkvlitlrmlkakxqxkegippdq
qrghfrr*siggwsysl*xqhskgixspxssqikrwyaxfxxnxhw*nhxtxsxr**xhx
ecknxnsxxrryptrsttshfrr*tirrws
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHD313 (CHD313Q) /CSM/CH/CHD3-A/CHD313Q.Seq.d/                       1178   0.0
SFF543 (SFF543Q) /CSM/SF/SFF5-B/SFF543Q.Seq.d/                        809   0.0
SFF769 (SFF769Q) /CSM/SF/SFF7-C/SFF769Q.Seq.d/                        799   0.0
SFB295 (SFB295Q) /CSM/SF/SFB2-D/SFB295Q.Seq.d/                        797   0.0
SFH711 (SFH711Q) /CSM/SF/SFH7-A/SFH711Q.Seq.d/                        789   0.0
CFE635 (CFE635Q) /CSM/CF/CFE6-B/CFE635Q.Seq.d/                        783   0.0
CFJ219 (CFJ219Q) /CSM/CF/CFJ2-A/CFJ219Q.Seq.d/                        777   0.0
SFC119 (SFC119Q) /CSM/SF/SFC1-A/SFC119Q.Seq.d/                        771   0.0
AFC761 (AFC761Q) /CSM/AF/AFC7-C/AFC761Q.Seq.d/                        767   0.0
SFC110 (SFC110Q) /CSM/SF/SFC1-A/SFC110Q.Seq.d/                        765   0.0
own update 2004. 5. 5
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   373   0.0    8
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   365   0.0    8
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   365   0.0    8
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   220   e-118  8
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   167   3e-92  10
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   103   1e-75  8
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   111   1e-73  8
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   111   8e-73  8
BJ541175|BJ541175.1 Oryzias latipes cDNA clone:MF01SSB034A18, 3' end single read.    68   7e-45  7
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.       84   7e-41  8
dna update 2004. 1.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   182   8e-45
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   182   8e-45
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   182   8e-45
AK056939_1(AK056939|pid:none) Homo sapiens cDNA FLJ32377 fis, cl...   174   2e-44
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   179   1e-43
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   177   3e-43
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   177   3e-43
AB045758_1(AB045758|pid:none) Physarum polycephalum ppub4 mRNA f...   176   6e-43
AB045757_1(AB045757|pid:none) Physarum polycephalum ppub3 mRNA f...   176   6e-43
AM270080_13(AM270080|pid:none) Aspergillus niger contig An04c019...   176   6e-43
protein update 2009. 5.18
PSORT 

 psg: 0.87  gvh: 0.51  alm: 0.48  top: 0.40  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHD313 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHD313Z
3' end seq. 
>CHD313Z.Seq
NNNNNNNNNNAAGTTGAAGGTAGNGTCANCATTNAGAATGTATAGGCAAAAGATTCAAGA
AAATAAGGTNTNCCTCCAGATCAACATCGTNTCATTTTCGCTGGTNACAATTAGAAGATG
GTCGTACTCTCTCTGATTACAATATCCNAAAAGCATCATCTCTCCCCCTTGGTCCTCANA
TTAAGAGGTGGTATGCCAATNTNTGTCAANACATGTTGTGGTAANACCATCACTCNTGNA
GTTNAGGGCTNANATAANATTANNAATGTTCAACACAAAAGATTCNAGGCAAAGAAGGTA
TCCCNCCAGNCCAACAAAGATTGNTTTTNNTTGGTNAACAATTAGAAGATGGTGGTACTC
TATCTGATNACNACATTCNAAAGNAATCCACTCTCCATTTAGTCCTNAGATTAATAGTGT
GGTATGCAAATTTTTGTCNANACCGTCANTGGTAANANTATNNCNCTNNAAGTTNAAGGT
TTTGATAACATTGAGAATGTTAAAGGCCAAAANNCAANACAAAGAAGGTATTCCNCCAGA
TCAACAACGTGGTCATTTTCGCCGGTAGTCAATTGGAGGATGGTCGTACTCTCTNTGATT
NCAACATTCNAAAGGAATCCNCTCTCCANTTAGTTCNCAGATTAAGAGGTGGTATGCANA
NTTTTGNNAAAACNNTCACTGGTAAAACCATNACACTNNAAGTTNAAGGTAGTGACANCA
TTGNGAATGTAAAAACNAAAATTCNANACNAAGAAGGTATCCCACCAGATCAACAACGTC
TCATTTTCGCCGGTAAACAATTAGAAGATGGTCG
Length of 3' end seq. 814
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -