CHD258
Library CH
(Link to library)
Clone ID CHD258
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHD258 (CHD258Q) /CSM/CH/CHD2-C/CHD258Q.Seq.d/
XXXXXXXXXXCGTTACAGTAAATCACCATACATTTATCCATTATATGGTTTAGGTGAATT
ACCACAAGCATTTGCCCGTTTATCTGCTATCTATGGTGGTACATATATGCTTAATAAACC
AATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGA
AACTGTAACATGTGATAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAA
GAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGTCCAATTCCATCTGCTGATAA
GAAATTTGAATCACTCCAAATCATTATCCCACAAAAACAAGTTAAACGTCAATCAGATAT
GTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAATACATTGCCAT
CGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGAATTAGCACCAGCTTACGCTTT
ATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGATTTCATTGAACCAATTGCTGA
TGGTACTGCCGACAATGTTTTCATCTCAAAATCATATGATGCTACCTCTCACTTTGAAAC
CACTTGTGAAGATGTCATGGATATGTACAAGAGAATCACTGGTAAAGATTTAGTTCTCAC
TGTTCATCCAAATATTCTTAAACAACAAGAAGAAG
sequence update 2002. 9.10
Translated Amino Acid sequence
---YSKSPYIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIVFDEEKKIIKVTSEGET
VTCDKIVCDPSYFPNKVQKKGKIIRSICILNGPIPSADKKFESLQIIIPQKQVKRQSDMY
VGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQEKFVYISDFIEPIADG
TADNVFISKSYDATSHFETTCEDVMDMYKRITGKDLVLTVHPNILKQQEE


Translated Amino Acid sequence (All Frames)
Frame A:
---vtvnhhtfihymv*vnyhkhlpvyllsmvvhiclinqlkilfsmkkrkllklhlkvk
l*hviklfvihhisqikfkrkvklfvqfvf*mvqfhllirnlnhskslshknklnvnqic
tlvlchplivsvqrvntlpsfqpllkpmnqrkn*hqltly*vqfkrnlsiflislnqllm
vlptmfssqnhmmlpltlkplvkmswictreslvki*fslfiqiflnnkkk


Frame B:
---lq*itihlsiiwfr*ittsicpficylwwyiya**tn*kycfr*rkeny*syi*r*n
cnm**ncl*siifpk*ssker*nysfnlyfewsnsic**ei*itpnhyptkts*tsiryv
rwcyvirslclskg*ihchrfshc*nq*treristslrfirsnsreiclyf*fh*tnc*w
ycrqcfhlkii*cylsl*nhl*rchgyvqenhw*rfsshcsskys*ttrr


Frame C:
---YSKSPYIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIVFDEEKKIIKVTSEGET
VTCDKIVCDPSYFPNKVQKKGKIIRSICILNGPIPSADKKFESLQIIIPQKQVKRQSDMY
VGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQEKFVYISDFIEPIADG
TADNVFISKSYDATSHFETTCEDVMDMYKRITGKDLVLTVHPNILKQQEE


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFJ795 (SFJ795Q) /CSM/SF/SFJ7-D/SFJ795Q.Seq.d/ 1358 0.0
SFJ449 (SFJ449Q) /CSM/SF/SFJ4-C/SFJ449Q.Seq.d/ 1358 0.0
SFI510 (SFI510Q) /CSM/SF/SFI5-A/SFI510Q.Seq.d/ 1358 0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/ 1358 0.0
CHD258 (CHD258Q) /CSM/CH/CHD2-C/CHD258Q.Seq.d/ 1358 0.0
CHB577 (CHB577Q) /CSM/CH/CHB5-D/CHB577Q.Seq.d/ 1358 0.0
CFC760 (CFC760Q) /CSM/CF/CFC7-C/CFC760Q.Seq.d/ 1358 0.0
AFN874 (AFN874Q) /CSM/AF/AFN8-D/AFN874Q.Seq.d/ 1358 0.0
AFE889 (AFE889Q) /CSM/AF/AFE8-D/AFE889Q.Seq.d/ 1358 0.0
AFD453 (AFD453Q) /CSM/AF/AFD4-C/AFD453Q.Seq.d/ 1358 0.0

own update 2002. 9.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL408803|AL408803.1 T3 end of clone AV0AA010G06 of library AV0AA from strain CBS 379 ofSaccharomyces exiguus. 54 9e-10 3
AJ005836|AJ005836.1 Cicer arietinum mRNA for GDP dissociation inhibitor (gdi). 38 1e-09 4
BG790353|BG790353.1 sae68c10.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-3212 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 3e-08 2
BE800797|BE800797.1 sq98c12.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-1199 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 3e-08 2
AW397479|AW397479.1 sg79d05.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-2626 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 3e-08 2
BU964562|BU964562.1 sas99a12.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-12311 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 4e-08 2
BI315670|BI315670.1 saf75f12.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-2184 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 62 1e-07 2
AI437629|AI437629.1 sa37e09.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1505 5' similar to TR:O24653 O24653 GDI2. ;, mRNA sequence. 62 1e-07 2
BZ296562|BZ296562.1 CG2922.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG2922, DNA sequence. 66 7e-07 1
AJ618983|AJ618983.1 Medicago truncatula gdi gene for GDP dissociation inhibitor. 40 1e-06 3
dna update 2004. 1.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF676817_1(EF676817|pid:none) Picea sitchensis clone WS02753_I09... 270 4e-71
EF085049_1(EF085049|pid:none) Picea sitchensis clone WS0297_P09 ... 270 4e-71
AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ... 267 2e-70
BT071197_1(BT071197|pid:none) Picea sitchensis clone WS0279_A10 ... 266 4e-70
BC095329_1(BC095329|pid:none) Danio rerio GDP dissociation inhib... 266 4e-70
AF130987_1(AF130987|pid:none) Rattus norvegicus RAB GDP dissocia... 266 6e-70
(O97555) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 266 6e-70
(P50398) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 266 6e-70
X74402_1(X74402|pid:none) R.norvegicus rab GDI alpha mRNA. 266 6e-70
(P21856) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 265 1e-69
protein update 2009. 5.18
PSORT

psg: 0.85 gvh: 0.62 alm: 0.47 top: 0.40 tms: 0.00 mit: 0.17 mip: 0.05
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: mitochondrial
8.0 %: extracellular, including cell wall
8.0 %: endoplasmic reticulum
4.0 %: cytoskeletal
4.0 %: peroxisomal
4.0 %: vacuolar

>> prediction for CHD258 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHD258Z
3' end seq.
>CHD258Z.Seq
NNNNNNNNNNCGTTACAGTAAATCACCATACATTTATCCATTATATGGTTTAGGTGAATT
ACCACAAGCATTTGCCCGTTTATCTGCTATCTATGGTGGTACATATATGCTTAATAAACC
AATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTATTAAAGTTACATCTGAAGGTGA
AACTGTAACATGTGATAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAA
GAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGGTCCAATTCCATCTGCTGATAA
GAAATTTGAATCACTCCAAATCATTATCCCACAAAAACAAGTTAAACGTCAATCAGATAT
GTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCCAAAGGGTAAATACATTGCCAT
CGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGAATTAGCACCAGCTTACGCTTT
ATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGATTTCATTGAACCAATTGCTGA
TGGTACTGCCGACAATGTTTTCATCTCAAAATCATATGATGCTACCTCTCACTTTGAAAC
CACTTGTGAAGATGTCATGGATATGTACAAGAGAATCACTGGTAAAGATTTAGTTCTCAC
TGTTCATCCAAATATTCTTAAACAACAAGAAGAAG
Length of 3' end seq. 695
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -