CHD248 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHD248
Library	CH (Link to library)
Clone ID	CHD248 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15940-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHD2-B/CHD248Q.Seq.d/
Representative seq. ID	CHD248P (Link to Original site)
Representative DNA sequence	>CHD248 (CHD248Q) /CSM/CH/CHD2-B/CHD248Q.Seq.d/ AATAAGGACCCAGTAATACTTTGTAAATATACAATAGAATCACAACCAAAGAGTAATATA TCGGTTTTAAAACCAACTTTGGTTGAATTTATAAATCAACCCGATAGTAAAGATGATGAA TCATCAGTAAAATCACCACCATTACCAGTGGAGTCACAACCAATATTCAATTCAAAACAA AGTGCAACAATGGATGGAATTACCACTCATAAATCAGTATCGATTACGATTTCCACATCG ACATCACCATCTTCAACAACCACAACCACATCAACTACCACTTCAATTATAGCAGAAGAA CCATCGAGTCCAATATTACCAACTGCATCACCATCCTCCTCTTCTTCATCGATAATTACA ACCGCAACTGCTTCAACAATACCAATGTCACCTTCATTACCATCAATACCATTTCATGAG TTTGAAACAATGGAATCCTCTACCACAACAACTTTATTATCAGAAAATAATGGTGGTGGT GGAGGCAGTAGTTGTAATGATAATAGTAGAAGAAATAGTTTGAATATCTTACCATTAAGA TTAAAATCATTCTCATTTTCTGCTCCACAATCTGATTCAATGXXXXXXXXXXACAACAAC TACAACTATACCATCACCATCAACAAATTCAAGGTCTATTTGTAATACTTTAATGGATAG TACAGATTCGATTAATAATACAAATACAAATACAAATACAAATACAAATACAAATACAAA TACAAATACAAATACAAATACAAATACAAATACAAATGCAAATATTAATAATAAAGTATC GACTACAACTACAACCACAACAACTAAGAGGAGATCATTAAAGATGGATCAATTTAAAGA GAAAGAGGATGAATGGGATCAAGGTGTTGATTTAACATCATTTTTAAAGAGAAAACCAAC ATTACAAAGAGATTTCAGTTATTGTAATAATAAAGTAATGGAAATTTCAAGTGTAAAAGA AGAAGCCAAACGGTTACATGGTGGTACTGGATATATTCATCAATTTGCATTTGAAGCATT TAAAGATATTTTAGAGGCAAAACAAACTCAAATCAATAGAGCTTTTTGTTCTCAAAAAAT TGATGCTCCAGATTGTGAAATGTTAATAAATGAAATTAACACTGCAAAGAAATTATTGGA AGATTTATTAGAATTAAATAGTAATAGTAGTGGTAGTGGTAATAATAGTAATGATAATAG CGGTTCCTCATCACCTTCTTCTTCAAAAACAAATACTTTAAATCAACAATCAATTTGT
sequence update	2002.10.25
Translated Amino Acid sequence	NKDPVILCKYTIESQPKSNISVLKPTLVEFINQPDSKDDESSVKSPPLPVESQPIFNSKQ SATMDGITTHKSVSITISTSTSPSSTTTTTSTTTSIIAEEPSSPILPTASPSSSSSSIIT TATASTIPMSPSLPSIPFHEFETMESSTTTTLLSENNGGGGGSSCNDNSRRNSLNILPLR LKSFSFSAPQSDSM--- ---TTTTTIPSPSTNSRSICNTLMDSTDSINNTNTNTNTNTNTNTNTNTNTNTNTNTNAN INNKVSTTTTTTTTKRRSLKMDQFKEKEDEWDQGVDLTSFLKRKPTLQRDFSYCNNKVME ISSVKEEAKRLHGGTGYIHQFAFEAFKDILEAKQTQINRAFCSQKIDAPDCEMLINEINT AKKLLEDLLELNSNSSGSGNNSNDNSGSSSPSSSKTNTLNQQSIC
Translated Amino Acid sequence (All Frames)	Frame A: NKDPVILCKYTIESQPKSNISVLKPTLVEFINQPDSKDDESSVKSPPLPVESQPIFNSKQ SATMDGITTHKSVSITISTSTSPSSTTTTTSTTTSIIAEEPSSPILPTASPSSSSSSIIT TATASTIPMSPSLPSIPFHEFETMESSTTTTLLSENNGGGGGSSCNDNSRRNSLNILPLR LKSFSFSAPQSDSM--- ---TTTTTIPSPSTNSRSICNTLMDSTDSINNTNTNTNTNTNTNTNTNTNTNTNTNTNAN INNKVSTTTTTTTTKRRSLKMDQFKEKEDEWDQGVDLTSFLKRKPTLQRDFSYCNNKVME ISSVKEEAKRLHGGTGYIHQFAFEAFKDILEAKQTQINRAFCSQKIDAPDCEMLINEINT AKKLLEDLLELNSNSSGSGNNSNDNSGSSSPSSSKTNTLNQQSIC Frame B: irtqyfvniqnhnqrviyrfnqlwlnlinpivkmmnhqnhhhyqwshnqysiqnk vqqwmelplinqyrlrfphrhhhlqqpqphqlplqlqknhrvqyyqlhhhppllhrlq pqllqqyqchlhyhqyhfmslkqwnplpqqlyyqkimvvveavvvmiiveeivisyhd nhshfllhnliq--- ---qqlqlyhhhqqiqglfvilwivqirliiqiqiqiqiqiqiqiqiqiqiqiqiqmqi liikyrlqlqpqqlrgdhrwinlkrkrmngikvlihhfrenqhykeisviviikwk fqvkkkpngymvvldifinlhlkhlkifrqnklksielfvlkklmlqivkcmkltl qrnywkiynivivvvvviivmiiavphhlllqkqilinnqf Frame C: gpsntliynrittkeyigfktnfgiykstrriiskittitsgvttniqfktk cnngwnyhsisidydfhiditifnnhnhinyhfnysrrtiesnitncitillffidnyn rncfnntnvtfitintisvnngilyhnnfiirkwwwwrql***kkfeyltiki kiilifcstifn--- ---nnynytitinkfkvylyfngyrfdykykykykykykykykykykykykykcky *sidynynhnneeiikdgsirergmgsrcfniifkektnitkrfqll*sngn fkckrrsqtvtwwywiyssicisiryfrgktnsnqsflfskncsrlnvnknhc keiigrfirik***ww*******rflitfffknkyfkstinl
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHD248 (CHD248Q) /CSM/CH/CHD2-B/CHD248Q.Seq.d/ 1275 0.0 SFB380 (SFB380Q) /CSM/SF/SFB3-D/SFB380Q.Seq.d/ 1078 0.0 SLH565 (SLH565Q) /CSM/SL/SLH5-C/SLH565Q.Seq.d/ 981 0.0 CHS269 (CHS269Q) /CSM/CH/CHS2-C/CHS269Q.Seq.d/ 981 0.0 CHI311 (CHI311Q) /CSM/CH/CHI3-A/CHI311Q.Seq.d/ 975 0.0 AHG576 (AHG576Q) /CSM/AH/AHG5-D/AHG576Q.Seq.d/ 973 0.0 SSI276 (SSI276Q) /CSM/SS/SSI2-D/SSI276Q.Seq.d/ 944 0.0 CFH345 (CFH345Q) /CSM/CF/CFH3-B/CFH345Q.Seq.d/ 926 0.0 VSB157 (VSB157Q) /CSM/VS/VSB1-C/VSB157Q.Seq.d/ 846 0.0 CHR812 (CHR812Q) /CSM/CH/CHR8-A/CHR812Q.Seq.d/ 844 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 44 1e-15 21 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 44 3e-14 23 AC116963\|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 46 7e-12 21 AC116979\|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 46 1e-11 23 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 40 1e-11 20 AC117080\|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 38 5e-10 14 AC117072\|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 40 5e-10 15 AC116956\|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 36 2e-09 18 AC115684\|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 40 2e-09 12 AC117081\|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 36 3e-09 15
dna update	2004. 9.18
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q2NHN9) RecName: Full=Riboflavin kinase; Short=RFK; ... 34 9.1
protein update	2008.10.25
PSORT	psg: 0.58 gvh: 0.40 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00 nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: cytoplasmic 28.0 %: nuclear 20.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: vesicles of secretory system >> prediction for CHD248 is cyt
5' end seq. ID	CHD248F
5' end seq.	>CHD248F.Seq AATAAGGACCCAGTAATACTTTGTAAATATACAATAGAATCACAACCAAAGAGTAATATA TCGGTTTTAAAACCAACTTTGGTTGAATTTATAAATCAACCCGATAGTAAAGATGATGAA TCATCAGTAAAATCACCACCATTACCAGTGGAGTCACAACCAATATTCAATTCAAAACAA AGTGCAACAATGGATGGAATTACCACTCATAAATCAGTATCGATTACGATTTCCACATCG ACATCACCATCTTCAACAACCACAACCACATCAACTACCACTTCAATTATAGCAGAAGAA CCATCGAGTCCAATATTACCAACTGCATCACCATCCTCCTCTTCTTCATCGATAATTACA ACCGCAACTGCTTCAACAATACCAATGTCACCTTCATTACCATCAATACCATTTCATGAG TTTGAAACAATGGAATCCTCTACCACAACAACTTTATTATCAGAAAATAATGGTGGTGGT GGAGGCAGTAGTTGTAATGATAATAGTAGAAGAAATAGTTTGAATATCTTACCATTAAGA TTAAAATCATTCTCATTTTCTGCTCCACAATCTGATTCAATGNNNNNNNNNN
Length of 5' end seq.	592
3' end seq. ID	CHD248Z
3' end seq.	>CHD248Z.Seq NNNNNNNNNNACAACAACTACAACTATACCATCACCATCAACAAATTCAAGGTCTATTTG TAATACTTTAATGGATAGTACAGATTCGATTAATAATACAAATACAAATACAAATACAAA TACAAATACAAATACAAATACAAATACAAATACAAATACAAATACAAATACAAATGCAAA TATTAATAATAAAGTATCGACTACAACTACAACCACAACAACTAAGAGGAGATCATTAAA GATGGATCAATTTAAAGAGAAAGAGGATGAATGGGATCAAGGTGTTGATTTAACATCATT TTTAAAGAGAAAACCAACATTACAAAGAGATTTCAGTTATTGTAATAATAAAGTAATGGA AATTTCAAGTGTAAAAGAAGAAGCCAAACGGTTACATGGTGGTACTGGATATATTCATCA ATTTGCATTTGAAGCATTTAAAGATATTTTAGAGGCAAAACAAACTCAAATCAATAGAGC TTTTTGTTCTCAAAAAATTGATGCTCCAGATTGTGAAATGTTAATAAATGAAATTAACAC TGCAAAGAAATTATTGGAAGATTTATTAGAATTAAATAGTAATAGTAGTGGTAGTGGTAA TAATAGTAATGATAATAGCGGTTCCTCATCACCTTCTTCTTCAAAAACAAATACTTTAAA TCAACAATCAATTTGT
Length of 3' end seq.	676
Connected seq. ID	CHD248P
Connected seq.	>CHD248P.Seq AATAAGGACCCAGTAATACTTTGTAAATATACAATAGAATCACAACCAAAGAGTAATATA TCGGTTTTAAAACCAACTTTGGTTGAATTTATAAATCAACCCGATAGTAAAGATGATGAA TCATCAGTAAAATCACCACCATTACCAGTGGAGTCACAACCAATATTCAATTCAAAACAA AGTGCAACAATGGATGGAATTACCACTCATAAATCAGTATCGATTACGATTTCCACATCG ACATCACCATCTTCAACAACCACAACCACATCAACTACCACTTCAATTATAGCAGAAGAA CCATCGAGTCCAATATTACCAACTGCATCACCATCCTCCTCTTCTTCATCGATAATTACA ACCGCAACTGCTTCAACAATACCAATGTCACCTTCATTACCATCAATACCATTTCATGAG TTTGAAACAATGGAATCCTCTACCACAACAACTTTATTATCAGAAAATAATGGTGGTGGT GGAGGCAGTAGTTGTAATGATAATAGTAGAAGAAATAGTTTGAATATCTTACCATTAAGA TTAAAATCATTCTCATTTTCTGCTCCACAATCTGATTCAATG----------ACAACAAC TACAACTATACCATCACCATCAACAAATTCAAGGTCTATTTGTAATACTTTAATGGATAG TACAGATTCGATTAATAATACAAATACAAATACAAATACAAATACAAATACAAATACAAA TACAAATACAAATACAAATACAAATACAAATACAAATGCAAATATTAATAATAAAGTATC GACTACAACTACAACCACAACAACTAAGAGGAGATCATTAAAGATGGATCAATTTAAAGA GAAAGAGGATGAATGGGATCAAGGTGTTGATTTAACATCATTTTTAAAGAGAAAACCAAC ATTACAAAGAGATTTCAGTTATTGTAATAATAAAGTAATGGAAATTTCAAGTGTAAAAGA AGAAGCCAAACGGTTACATGGTGGTACTGGATATATTCATCAATTTGCATTTGAAGCATT TAAAGATATTTTAGAGGCAAAACAAACTCAAATCAATAGAGCTTTTTGTTCTCAAAAAAT TGATGCTCCAGATTGTGAAATGTTAATAAATGAAATTAACACTGCAAAGAAATTATTGGA AGATTTATTAGAATTAAATAGTAATAGTAGTGGTAGTGGTAATAATAGTAATGATAATAG CGGTTCCTCATCACCTTCTTCTTCAAAAACAAATACTTTAAATCAACAATCAATTTGT
Length of connected seq.	1248
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas