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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHD226
Library CH
(Link to library)
Clone ID CHD226
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHD226P
(Link to Original site)
Representative DNA sequence 
>CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/
TTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAGAAATA
ATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXXXTCTTATACA
TCAATTGGTAAAATTGCATCTGGTAATGGTAATTCCNTTAGTGAGACCATTGGTACCACT
GGTGATACATTGGCTCATACATTCGCTGGTACAGATTCAGTCGGTGTAACTGGTTTCCAT
ATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATCAACAATAC
ATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATTA
CAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATCT
GAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATT
CAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGAT
TTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGA
GCCAATCAACAAGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATAT
GAACTTTTATTAGATCAACTCTATGATGAACAACAACAACAATCTCCTGACCAAATTAAA
AATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAAT
CAAGAAAAAAATCANCAATTATTAGAACAAGAACAAAATCNAAAATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
llsnnyfffsfflkfk**k**KLILKKRNVKKK---

---SYTSIGKIASGNGNSXSETIGTTGDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGKF
NSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNT
LKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQELINYELNLQ
EDQEQYELLLDQLYDEQQQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNXQLLEQEQNX
K*
Translated Amino Acid sequence (All Frames) 
Frame A:
ftik*lfflfflfkv*iieiikinikkker*kk---

---SYTSIGKIASGNGNSXSETIGTTGDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGKF
NSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNT
LKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQELINYELNLQ
EDQEQYELLLDQLYDEQQQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNXQLLEQEQNX
K*

Frame B:
llsnnyfffsfflkfk**k**KLILKKRNVKKK---

---lihqlvklhlvmviplvrplvplvihwlihslvqiqsv*lvsi*lqrlli*llvvnl
tlinntlinptvqfhhkimkklkrdykvlinnyknnhlqsinq*nlki*ki*mmk*fvil
lrkckfnvkikilvnkikkiknn*liykienlvytkinkilnkrkepinkn*simn*iyk
kiknnmnfy*insmmnnnnnlltklkin*kifnmnnksknnkin*ikkkixny*nknkix
n

Frame C:
yyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---lyinw*nciw*w*fx**dhwyhw*yigsyirwyrfsrcnwfpynykdf*fdcww*i*
l*stih**ilrfnsitr**rn*keitkcsstitrtitcnlsinei*rskkfr**sns*ys
*gnanst*ksrywstksrr*rtin*ftk*rtwfiqkstrs*treksqstrinql*ieftr
rsrti*tfirstl**ttttis*pn*ksikkyst*ttnprttr*iksrkksxiirtrtksk
i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/                       1362   0.0
AFK694 (AFK694Q) /CSM/AF/AFK6-D/AFK694Q.Seq.d/                       1239   0.0
SFJ324 (SFJ324Q) /CSM/SF/SFJ3-A/SFJ324Q.Seq.d/                       1166   0.0
CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/                       1166   0.0
SFK701 (SFK701Q) /CSM/SF/SFK7-A/SFK701Q.Seq.d/                       1154   0.0
AFN735 (AFN735Q) /CSM/AF/AFN7-B/AFN735Q.Seq.d/                       1154   0.0
SFE858 (SFE858Q) /CSM/SF/SFE8-C/SFE858Q.Seq.d/                       1128   0.0
CFH714 (CFH714Q) /CSM/CF/CFH7-A/CFH714Q.Seq.d/                       1126   0.0
SFB370 (SFB370Q) /CSM/SF/SFB3-C/SFB370Q.Seq.d/                       1104   0.0
CHC215 (CHC215Q) /CSM/CH/CHC2-A/CHC215Q.Seq.d/                       1080   0.0
own update 2002. 9.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.  1166   0.0    4
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    34   5e-11  23
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    34   3e-08  14
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   6e-07  12
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    36   3e-06  12
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    36   3e-06  14
AB063521|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2.    36   4e-06  17
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    34   7e-06  19
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   8e-06  16
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   1e-05  20
dna update 2004. 9.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   335   1e-90
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara...    50   1e-04
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028...    47   6e-04
CP001279_131(CP001279|pid:none) Nautilia profundicola AmH, compl...    47   0.001
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    47   0.001
BT036468_1(BT036468|pid:none) Zea mays full-length cDNA clone ZM...    46   0.001
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes...    45   0.002
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co...    45   0.002
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    45   0.003
BC149000_1(BC149000|pid:none) Bos taurus involucrin, mRNA (cDNA ...    45   0.003
protein update 2009. 3.30
PSORT 

 psg: 0.63  gvh: 0.40  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for CHD226 is nuc
5' end seq. ID CHD226F
5' end seq. 
>CHD226F.Seq
TTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAGAAATA
ATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 111
3' end seq. ID CHD226Z
3' end seq. 
>CHD226Z.Seq
NNNNNNNNNNTCTTATACATCAATTGGTAAAATTGCATCTGGTAATGGTAATTCCNTTAG
TGAGACCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCTGGTACAGATTCAGT
CGGTGTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATT
TAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGA
AGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAAT
CTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATAC
TCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGA
TAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGA
TCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTACA
AGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGATGAACAACAACAACA
ATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGA
ACAACAAGATAAATTAAATCAAGAAAAAAATCANCAATTATTAGAACAAGAACAAAATCN
AAAATAA
Length of 3' end seq. 727
Connected seq. ID CHD226P
Connected seq. 
>CHD226P.Seq
TTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAGAAATA
ATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA----------TCTTATACA
TCAATTGGTAAAATTGCATCTGGTAATGGTAATTCCNTTAGTGAGACCATTGGTACCACT
GGTGATACATTGGCTCATACATTCGCTGGTACAGATTCAGTCGGTGTAACTGGTTTCCAT
ATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATCAACAATAC
ATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATTA
CAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATCT
GAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATT
CAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGAT
TTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGA
GCCAATCAACAAGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATAT
GAACTTTTATTAGATCAACTCTATGATGAACAACAACAACAATCTCCTGACCAAATTAAA
AATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAAT
CAAGAAAAAAATCANCAATTATTAGAACAAGAACAAAATCNAAAATAA
Length of connected seq. 818
Full length Seq ID -
Full length Seq. -
Length of full length seq. -