NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHD103
Library CH
(Link to library)
Clone ID CHD103
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13922-1
Original site URL
Representative seq. ID CHD103P
(Link to Original site)
Representative DNA sequence 
>CHD103 (CHD103Q) /CSM/CH/CHD1-A/CHD103Q.Seq.d/
ATAAATATAATTNCAATTTAAAANGTACTCACCANAAGATTTAGAATATAGAGAACAACA
ACGTTTAAGTAAAGCATTACAAGGTAAATTAGGTGGTGCAAGCTCAAGAAAATCATGGGC
ACCAGTTGTAACAGGTAAACCACAAACACATANNGCACCAGTTAATAGTTCATTTGCATC
AATTTCAATTTCXXXXXXXXXXCCAGCATATACTTCATTAAATTCATCATCCTCATCCAC
CATCTCAAAGAGTAATAGCAATCAAAGCCTTGCAAAGGAAACCAGTAGTAACAACCTCTT
GCAATATCAATCACCAGTTAGAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATAG
TGCTTCCATTATGAACAACGTTGATTCTCATACCTCTGAAGAGAAAATGAAGCAAGAGGC
AAAGAGATTAGAAAGATGGGGTTTAAAGATTAACTCACCAACTGCTACCTCACCAAGCAC
TACCTCACCACCAGTCTCTAGTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAATC
TGTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAA
TCTCCCAATCGCTACTACCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCGT
TAAACAAATCATTCAAAAGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGA
TTTAGTAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTT
CGATATCTCNCAAAATGCTGGAAACTCGCTGG
sequence update 2002.10.25
Translated Amino Acid sequence 
*i*XQFKXYSPXDLEYREQQRLSKALQGKLGGASSRKSWAPVVTGKPQTHXAPVNSSFAS
ISI---

---PAYTSLNSSSSSTISKSNSNQSLAKETSSNNLLQYQSPVRVASSTSSENLVDSASIM
NNVDSHTSEEKMKQEAKRLERWGLKINSPTATSPSTTSPPVSSTTPVAPVTPTEQSVPQS
PFSTGAAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTSNRDIVISILMDLVKE
SANFGMTLSSTTPMSFDISQNAGNSL
Translated Amino Acid sequence (All Frames) 
Frame A:
iniixi*xvltxrfri*rtttfk*sitr*irwcklkkimgtscnr*ttntxxts**fici
nfnf---

---PAYTSLNSSSSSTISKSNSNQSLAKETSSNNLLQYQSPVRVASSTSSENLVDSASIM
NNVDSHTSEEKMKQEAKRLERWGLKINSPTATSPSTTSPPVSSTTPVAPVTPTEQSVPQS
PFSTGAAVSVNQSHSNLPIATTQQFLDRIVLSAKSVKQIIQKKTSNRDIVISILMDLVKE
SANFGMTLSSTTPMSFDISQNAGNSL

Frame B:
*i*XQFKXYSPXDLEYREQQRLSKALQGKLGGASSRKSWAPVVTGKPQTHXAPVNSSFAS
ISI---

---qhilh*ihhphppsqrviaikalqrkpvvttscninhqle*paqhhlri*sivlpl*
ttliliplkrk*skrqrd*kdgv*rlthqllphqalphhqslvplrlhq*lqpnnlyhnl
hsqlvlpslsikviaisqsllpnnslivsfsllnplnksfkrkplivilsslfswi**rn
lqtlv*lslqlpqclsisxkmletrw

Frame C:
kynxnlkxthxki*niennnv*vkhykvn*vvqaqenhghql*qvnhkhixhqlivhlhq
fqf---

---siyfikfiilihhlke**qskpckgnq**qplaisits*ssqlnii*efsr*cfhye
qr*fsyl*reneargkeirkmgfkd*ltncyltkhylttsl*yhsgctsdsnrticttis
ilnwccrlcqsks*qspnryyptip*syrslc*ir*tnhskenl*s*ychlyshgfskgi
cklwydslfnypnvfrylxkcwkla
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHD103 (CHD103Q) /CSM/CH/CHD1-A/CHD103Q.Seq.d/                       1515   0.0
CFA872 (CFA872Q) /CSM/CF/CFA8-C/CFA872Q.Seq.d/                       1189   0.0
SFG704 (SFG704Q) /CSM/SF/SFG7-A/SFG704Q.Seq.d/                       1183   0.0
SFC268 (SFC268Q) /CSM/SF/SFC2-C/SFC268Q.Seq.d/                       1181   0.0
SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/                       1162   0.0
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/                       1162   0.0
VFL163 (VFL163Q) /CSM/VF/VFL1-C/VFL163Q.Seq.d/                       1156   0.0
VFM511 (VFM511Q) /CSM/VF/VFM5-A/VFM511Q.Seq.d/                       1120   0.0
AFO548 (AFO548Q) /CSM/AF/AFO5-B/AFO548Q.Seq.d/                       1114   0.0
CFB439 (CFB439Q) /CSM/CF/CFB4-B/CFB439Q.Seq.d/                       1065   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF222688|AF222688.1 Dictyostelium discoideum dynacortin (dct) mRNA, complete cds.  1181   0.0    1
AC122688|AC122688.5 Homo sapiens 12 BAC RP11-158L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    46   0.89   1
AL161564|AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64.    36   0.94   5
AC005722|AC005722.1 Homo sapiens chromosome 17, clone  hRPK.311_F_12, complete sequence.    38   1.7    2
AP006101|AP006101.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181.    36   2.5    8
BB161213|BB161213.1 Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130058L06, 3' end partial sequence.    36   3.3    2
AC019295|AC019295.3 Homo sapiens clone RP11-24O11, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44   3.5    1
AC140082|AC140082.2 Rattus norvegicus clone CH230-223J12 strain Brown Norway, WORKING DRAFT SEQUENCE, 8 ordered pieces.    44   3.5    1
AC010259|AC010259.7 Homo sapiens chromosome 5 clone CTC-454M9, complete sequence.    44   3.5    1
AC009990|AC009990.9 Homo sapiens chromosome 05 clone RP11-94N1, complete sequence.    44   3.5    1
dna update 2004. 9.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti...   281   2e-74
EU565733_1(EU565733|pid:none) Uncultured soil bacterium clone gl...    35   3.6
protein update 2008.10.24
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHD103 is cyt
5' end seq. ID CHD103F
5' end seq. 
>CHD103F.Seq
ATAAATATAATTNCAATTTAAAANGTACTCACCANAAGATTTAGAATATAGAGAACAACA
ACGTTTAAGTAAAGCATTACAAGGTAAATTAGGTGGTGCAAGCTCAAGAAAATCATGGGC
ACCAGTTGTAACAGGTAAACCACAAACACATANNGCACCAGTTAATAGTTCATTTGCATC
AATTTCAATTTCNNNNNNNNNN
Length of 5' end seq. 202
3' end seq. ID CHD103Z
3' end seq. 
>CHD103Z.Seq
NNNNNNNNNNCCAGCATATACTTCATTAAATTCATCATCCTCATCCACCATCTCAAAGAG
TAATAGCAATCAAAGCCTTGCAAAGGAAACCAGTAGTAACAACCTCTTGCAATATCAATC
ACCAGTTAGAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATAGTGCTTCCATTAT
GAACAACGTTGATTCTCATACCTCTGAAGAGAAAATGAAGCAAGAGGCAAAGAGATTAGA
AAGATGGGGTTTAAAGATTAACTCACCAACTGCTACCTCACCAAGCACTACCTCACCACC
AGTCTCTAGTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAATCTGTACCACAATC
TCCATTCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAATCTCCCAATCGC
TACTACCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCGTTAAACAAATCAT
TCAAAAGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAAGGA
ATCTGCAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTCNCA
AAATGCTGGAAACTCGCTGG
Length of 3' end seq. 620
Connected seq. ID CHD103P
Connected seq. 
>CHD103P.Seq
ATAAATATAATTNCAATTTAAAANGTACTCACCANAAGATTTAGAATATAGAGAACAACA
ACGTTTAAGTAAAGCATTACAAGGTAAATTAGGTGGTGCAAGCTCAAGAAAATCATGGGC
ACCAGTTGTAACAGGTAAACCACAAACACATANNGCACCAGTTAATAGTTCATTTGCATC
AATTTCAATTTC----------CCAGCATATACTTCATTAAATTCATCATCCTCATCCAC
CATCTCAAAGAGTAATAGCAATCAAAGCCTTGCAAAGGAAACCAGTAGTAACAACCTCTT
GCAATATCAATCACCAGTTAGAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATAG
TGCTTCCATTATGAACAACGTTGATTCTCATACCTCTGAAGAGAAAATGAAGCAAGAGGC
AAAGAGATTAGAAAGATGGGGTTTAAAGATTAACTCACCAACTGCTACCTCACCAAGCAC
TACCTCACCACCAGTCTCTAGTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAATC
TGTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAA
TCTCCCAATCGCTACTACCCAACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCGT
TAAACAAATCATTCAAAAGAAAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGA
TTTAGTAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTT
CGATATCTCNCAAAATGCTGGAAACTCGCTGG
Length of connected seq. 802
Full length Seq ID -
Full length Seq. -
Length of full length seq. -