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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC851
Library CH
(Link to library)
Clone ID CHC851
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13922-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHC851 (CHC851Q) /CSM/CH/CHC8-C/CHC851Q.Seq.d/
ATAAATATAATTACAATTTAAAATGTACTCACCAGAAGATTTAGAATATAGAGAACAACA
ACGTTTAAGTAAAGCATTACAAGGTAAATTAGGTGGTGCAAGCTCAAGAAAATCATGGGC
ACCAGTTGTAACAGGTAAACCACAAACACATAGTGCACCAGTTAATAGTTCATTTGCATC
AATTTCAATTTCAGATAAGCACCACGAATCACCATCAACAACAACATCATCACCATCAAC
ATCATCAGGTGTTGATAATAGTTCAATCTATCCAGGTGCAATCGTTGAGGATAAAGTTAA
ATCACAAGAAGCACACCGTTTGAAAAAGATGGGTCTTTCAACTGAAGAAGATGAATCAAC
CGCTCATATTCCAGCATATACTTCATTAAATTCATCATCCTCATCCACCATCTCAAAGAG
TAATAGCAATCAAAGCCTTGCAAAGGAAACCAGTAGTAACAACCTCTTGCAATATCAATC
ACCAGTTAGAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATAGTGCTTCCATTAT
GAACAACGTTGATTCTCATACCTXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
*i*LQFKMYSPEDLEYREQQRLSKALQGKLGGASSRKSWAPVVTGKPQTHSAPVNSSFAS
ISISDKHHESPSTTTSSPSTSSGVDNSSIYPGAIVEDKVKSQEAHRLKKMGLSTEEDEST
AHIPAYTSLNSSSSSTISKSNSNQSLAKETSSNNLLQYQSPVRVASSTSSENLVDSASIM
NNVDSHT---
Translated Amino Acid sequence (All Frames) 
Frame A:
iniiti*nvltrrfri*rtttfk*sitr*irwcklkkimgtscnr*ttnt*cts**fici
nfnfr*apritinnniitiniirc***fnlsrcnr*g*s*itrstpfekdgsfn*rr*in
rsyssiyfikfiilihhlke**qskpckgnq**qplaisits*ssqlnii*efsr*cfhy
eqr*fsy---


Frame B:
*i*LQFKMYSPEDLEYREQQRLSKALQGKLGGASSRKSWAPVVTGKPQTHSAPVNSSFAS
ISISDKHHESPSTTTSSPSTSSGVDNSSIYPGAIVEDKVKSQEAHRLKKMGLSTEEDEST
AHIPAYTSLNSSSSSTISKSNSNQSLAKETSSNNLLQYQSPVRVASSTSSENLVDSASIM
NNVDSHT---


Frame C:
kynynlkcthqki*niennnv*vkhykvn*vvqaqenhghql*qvnhkhivhqlivhlhq
fqfqisttnhhqqqhhhhqhhqvliivqsiqvqslriklnhkkhtv*krwvfqlkkmnqp
lifqhilh*ihhphppsqrviaikalqrkpvvttscninhqle*paqhhlri*sivlpl*
ttlili---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFG704 (SFG704Q) /CSM/SF/SFG7-A/SFG704Q.Seq.d/                        626   e-179
SFC268 (SFC268Q) /CSM/SF/SFC2-C/SFC268Q.Seq.d/                        626   e-179
CHC851 (CHC851Q) /CSM/CH/CHC8-C/CHC851Q.Seq.d/                        626   e-179
CFA872 (CFA872Q) /CSM/CF/CFA8-C/CFA872Q.Seq.d/                        626   e-179
AFO548 (AFO548Q) /CSM/AF/AFO5-B/AFO548Q.Seq.d/                        482   e-135
AFF249 (AFF249Q) /CSM/AF/AFF2-C/AFF249Q.Seq.d/                        438   e-122
CFB439 (CFB439Q) /CSM/CF/CFB4-B/CFB439Q.Seq.d/                        434   e-121
VFM511 (VFM511Q) /CSM/VF/VFM5-A/VFM511Q.Seq.d/                        404   e-112
CHD103 (CHD103Q) /CSM/CH/CHD1-A/CHD103Q.Seq.d/                        383   e-105
VFL163 (VFL163Q) /CSM/VF/VFL1-C/VFL163Q.Seq.d/                        379   e-104
own update 2002.11.20
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF222688|AF222688.1 Dictyostelium discoideum dynacortin (dct) mRNA, complete cds.   626   0.0    2
CR385054|CR385054.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-31I7.    48   0.087  4
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    36   0.11   8
AP003189|AP003189.2 Clostridium perfringens str. 13 DNA, complete genome, section 5/10.    36   0.19   6
AP006101|AP006101.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181.    36   0.20   9
AC122688|AC122688.5 Homo sapiens 12 BAC RP11-158L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    46   0.60   3
AL929330|AL929330.14 Zebrafish DNA sequence from clone CH211-26A17.    46   0.62   1
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          32   0.64   15
AP006347|AP006347.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT02G18, TM0334a.    38   0.84   6
BD193635|BD193635.1 Enterococcus faecialis polynucleotides and polypeptides.    38   1.4    2
dna update 2004. 9.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti...   281   6e-75
A53856(A53856) aryl-acylamidase (EC 3.5.1.13) - human  &AX214548...    33   3.9
protein update 2008.10.24
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CHC851 is cyt
5' end seq. ID CHC851F
5' end seq. 
>CHC851F.Seq
ATAAATATAATTACAATTTAAAATGTACTCACCAGAAGATTTAGAATATAGAGAACAACA
ACGTTTAAGTAAAGCATTACAAGGTAAATTAGGTGGTGCAAGCTCAAGAAAATCATGGGC
ACCAGTTGTAACAGGTAAACCACAAACACATAGTGCACCAGTTAATAGTTCATTTGCATC
AATTTCAATTTCAGATAAGCACCACGAATCACCATCAACAACAACATCATCACCATCAAC
ATCATCAGGTGTTGATAATAGTTCAATCTATCCAGGTGCAATCGTTGAGGATAAAGTTAA
ATCACAAGAAGCACACCGTTTGAAAAAGATGGGTCTTTCAACTGAAGAAGATGAATCAAC
CGCTCATATTCCAGCATATACTTCATTAAATTCATCATCCTCATCCACCATCTCAAAGAG
TAATAGCAATCAAAGCCTTGCAAAGGAAACCAGTAGTAACAACCTCTTGCAATATCAATC
ACCAGTTAGAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATAGTGCTTCCATTAT
GAACAACGTTGATTCTCATACCTNNNNNNNNNN
Length of 5' end seq. 573
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -