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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC836
Library CH
(Link to library)
Clone ID CHC836
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16598-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHC836 (CHC836Q) /CSM/CH/CHC8-B/CHC836Q.Seq.d/
XXXXXXXXXXTTTCNGTTTCAACCCNGNCNACTGTTGTTGGAGGTGATGTTATCNTNNGN
TCNATGGNTCCTTTANTGGCCNAAACGGTTTCCGATAAAGTTCCGAATAGTANATTTAAT
GGAGCTAGCNCNTTCCCACCC
sequence update 2002. 9.10
Translated Amino Acid sequence 
---SVSTXXTVVGGDVIXXSMXPLXAXTVSDKVPNSXFNGASXFPP
Translated Amino Acid sequence (All Frames) 
Frame A:
---fxfnpxxccwr*cyxxxxgsfxgxngfr*sse*xi*ws*xxpt


Frame B:
---SVSTXXTVVGGDVIXXSMXPLXAXTVSDKVPNSXFNGASXFPP


Frame C:
---xfqpxxlllevmlsxxxwxlxwpkrfpikfrivxlmelaxsh
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHC836 (CHC836Q) /CSM/CH/CHC8-B/CHC836Q.Seq.d/                        170   3e-42
SFF285 (SFF285Q) /CSM/SF/SFF2-D/SFF285Q.Seq.d/                        103   6e-22
CHE107 (CHE107Q) /CSM/CH/CHE1-A/CHE107Q.Seq.d/                        103   6e-22
AFG492 (AFG492Q) /CSM/AF/AFG4-D/AFG492Q.Seq.d/                        103   6e-22
VHB858 (VHB858Q) /CSM/VH/VHB8-C/VHB858Q.Seq.d/                        101   3e-21
VFM765 (VFM765Q) /CSM/VF/VFM7-C/VFM765Q.Seq.d/                        101   3e-21
VFK131 (VFK131Q) /CSM/VF/VFK1-B/VFK131Q.Seq.d/                        101   3e-21
VFJ649 (VFJ649Q) /CSM/VF/VFJ6-C/VFJ649Q.Seq.d/                        101   3e-21
VFI677 (VFI677Q) /CSM/VF/VFI6-D/VFI677Q.Seq.d/                        101   3e-21
VFG701 (VFG701Q) /CSM/VF/VFG7-A/VFG701Q.Seq.d/                        101   3e-21
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U61987|U61987.1 Dictyostelium discoideum phosphoprotein phosphatase A (pppA) mRNA, complete cds.   109   9e-21  1
BD193723|BD193723.1 Enterococcus faecialis polynucleotides and polypeptides.    46   0.12   1
AE016831|AE016831.1 Enterococcus faecalis V583 plasmid pTEF2, complete sequence.    46   0.12   1
BX560620|BX560620.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse50b03_q1c.    40   7.2    1
dna update 2004. 1.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61987_1(U61987|pid:none) Dictyostelium discoideum phosphoprotei...    37   0.28
protein update 2008.12.31
PSORT 

 psg: 0.87  gvh: 0.53  alm: 0.46  top: 0.40  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHC836 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHC836Z
3' end seq. 
>CHC836Z.Seq
NNNNNNNNNNTTTCNGTTTCAACCCNGNCNACTGTTGTTGGAGGTGATGTTATCNTNNGN
TCNATGGNTCCTTTANTGGCCNAAACGGTTTCCGATAAAGTTCCGAATAGTANATTTAAT
GGAGCTAGCNCNTTCCCACCC
Length of 3' end seq. 141
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -