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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC782
Library CH
(Link to library)
Clone ID CHC782
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15889-1
Original site URL
Representative seq. ID CHC782P
(Link to Original site)
Representative DNA sequence 
>CHC782 (CHC782Q) /CSM/CH/CHC7-D/CHC782Q.Seq.d/
ATTTTTACCACACATTCAATTGTGTGTGTTTAATATAAATTTTGTAATAGTAGAATGTTA
AAAAAACATAGAGTTTTAATAATAGTAATTGTTATGACATTAGTTGTAATGATAAGTTAT
AGTTCAATATTAAATATAAATACAGCACAAACATCAATAAATAATCAAAAGAATGGAGTT
GGTAATAAAAATGAAGAGATGGATATTGACGATATGAAAAATGTTGAAAATGAAAAATTA
GATGCAGAAATTTTAAGAAAACAAAAGAGAGAAAGACAACAAAATGGTGAAAACGTCTTT
GATGCAAATAATATTCAAGTTGGGTTACCCGATAGTAATAATAATAATTTATTATTCGGA
AATGAGGATGATATACCAATTCAAACTACATTAAAGAAAACAGATGATAAACTTTTAATT
GAATGTTTAGTAAGAGCATCAAAACAAAATAATCAATTATCAATTGAAAAAACCAAAGAG
AATTGGTTTACCTATATGAAAAAGATATCAAGTGAAAAAAAAGAGAAATGTCATTACTCA
AATCAACGTGATTATGACGAGCAACCAGTCCGTGTCGTTAGACAGTTGACAGAXXXXXXX
XXXCGATGATTATGTCACAGAGAAATTATTTGGTGTTTTCACCATTGGTTCCGTGCCCAT
CTATCATGGTGCCCCAAATGGTAAGAAATTCTTCCCATCCCCAAATGCCGGTATCTTTGT
CAATGATTTTGAATCACCAGAGGATTTAGCTGCCCATTTGAAATTCTTGGATGAAAATGA
TGAAGAGTATGAAAAATGTTTACAATGGAAAAAAACAGGCCCTACAAAAGATTGGATGGT
GGTTATGGACCAACTCAAGGCAAATGGTGATTGTAGAACTTGTATCAAGGTTGCCGATCT
TCAAAGAAAAGAGGTTGGTATGGTTGTTAATAAAAATACCTCAATGCAATTAGTACCAAA
ATCATTCACTCCAAATGATGGTATCGTTGTATTTATTAGAGAAAGAAATACTTTTTGGTT
CACATCGGTTGCAATACCTTATTCAACTACTTATGTCGAGTTGGTTGAAATCTTTTCAAA
CGCTTTAAATCATAAAGGTGAAATTTATTCAGCTAACGATCTTTGGTCAAAAGAACCAAT
CATTGATTTCAAAATGAAAGATAAAACTATTAAATTAACTCAAAATCAAGCAAATTGAAG
TTTTATTTGCAGATTTAGATTTTNTTGGGACATAGTAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
iftthsivcv*YKFCNSRMLKKHRVLIIVIVMTLVVMISYSSILNINTAQTSINNQKNGV
GNKNEEMDIDDMKNVENEKLDAEILRKQKRERQQNGENVFDANNIQVGLPDSNNNNLLFG
NEDDIPIQTTLKKTDDKLLIECLVRASKQNNQLSIEKTKENWFTYMKKISSEKKEKCHYS
NQRDYDEQPVRVVRQLT---

---DDYVTEKLFGVFTIGSVPIYHGAPNGKKFFPSPNAGIFVNDFESPEDLAAHLKFLDE
NDEEYEKCLQWKKTGPTKDWMVVMDQLKANGDCRTCIKVADLQRKEVGMVVNKNTSMQLV
PKSFTPNDGIVVFIRERNTFWFTSVAIPYSTTYVELVEIFSNALNHKGEIYSANDLWSKE
PIIDFKMKDKTIKLTQNQAN*sficrfrfxwdivk
Translated Amino Acid sequence (All Frames) 
Frame A:
iftthsivcv*YKFCNSRMLKKHRVLIIVIVMTLVVMISYSSILNINTAQTSINNQKNGV
GNKNEEMDIDDMKNVENEKLDAEILRKQKRERQQNGENVFDANNIQVGLPDSNNNNLLFG
NEDDIPIQTTLKKTDDKLLIECLVRASKQNNQLSIEKTKENWFTYMKKISSEKKEKCHYS
NQRDYDEQPVRVVRQLT---

---r*lchreiiwcfhhwfrahlswcpkw*eilpipkcrylcq*f*itrgfscpfeilg*
k**rv*kmftmeknrpykrldggygptqgkw*l*nlyqgcrsskkrgwygc**kylnais
tkiihsk*wyrciy*rkkyflvhigcntlfnylcrvg*nlfkrfks*r*nlfs*rslvkr
tnh*fqner*ny*inskssklkfylqi*ixlghskk

Frame B:
flphiqlcvfninfvivec*knief****ll*h*l***vivqy*i*iqhkhq*iikrmel
vikmkrwilti*kmlkmkn*mqkf*enkrekdnkmvktslmqiifklgypiviiiiyyse
mrmiyqfklh*rkqminf*lnv**ehqnkiinyqlkkpkriglpi*kryqvkkkrnvitq
invimtsnqsvslds*q---

---DDYVTEKLFGVFTIGSVPIYHGAPNGKKFFPSPNAGIFVNDFESPEDLAAHLKFLDE
NDEEYEKCLQWKKTGPTKDWMVVMDQLKANGDCRTCIKVADLQRKEVGMVVNKNTSMQLV
PKSFTPNDGIVVFIRERNTFWFTSVAIPYSTTYVELVEIFSNALNHKGEIYSANDLWSKE
PIIDFKMKDKTIKLTQNQAN*sficrfrfxwdivk

Frame C:
fyhtfncvcli*il***nvkkt*sfnnsncydiscndkl*fnikykystnink*skewsw
**k*rdgy*ryekc*k*kircrnfkktkerkttkw*krl*ck*ysswvtr*****fiirk
*g*ytnsnyikenr**tfn*mfsksiktk*siin*knqrelvylyekdik*kkremsllk
st*l*ratspcr*tvdr---

---mimsqrnylvfsplvpcpsimvpqmvrnsshpqmpvslsmilnhqri*lpi*nswmk
mmksmknvyngkkqalqkigwwlwtnsrqmvivelvsrlpifkekrlvwllikipqcn*y
qnhslqmmvslyllekeilfgshrlqyliqllmsswlksfqtl*iikvkfiqltifgqkn
qslisk*kiklln*lkikqievlfadldfxgt**k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHC782 (CHC782Q) /CSM/CH/CHC7-D/CHC782Q.Seq.d/                       1709   0.0
SFD768 (SFD768Q) /CSM/SF/SFD7-C/SFD768Q.Seq.d/                       1164   0.0
CHE459 (CHE459Q) /CSM/CH/CHE4-C/CHE459Q.Seq.d/                       1164   0.0
CHB249 (CHB249Q) /CSM/CH/CHB2-C/CHB249Q.Seq.d/                       1164   0.0
AFN482 (AFN482Q) /CSM/AF/AFN4-D/AFN482Q.Seq.d/                       1164   0.0
AFN272 (AFN272Q) /CSM/AF/AFN2-C/AFN272Q.Seq.d/                       1164   0.0
CFG731 (CFG731Q) /CSM/CF/CFG7-B/CFG731Q.Seq.d/                       1158   0.0
CFC792 (CFC792Q) /CSM/CF/CFC7-D/CFC792Q.Seq.d/                       1158   0.0
SFE505 (SFE505Q) /CSM/SF/SFE5-A/SFE505Q.Seq.d/                       1156   0.0
AFA373 (AFA373Q) /CSM/AF/AFA3-D/AFA373Q.Seq.d/                       1156   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    44   9e-10  13
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    38   2e-08  13
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           36   8e-08  18
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    42   4e-07  14
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    34   4e-07  18
AC116920|AC116920.3 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    38   9e-07  10
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   1e-06  16
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    42   2e-06  16
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    42   2e-06  15
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   3e-06  19
dna update 2004. 9.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY557602_1(AY557602|pid:none) Medicago truncatula cultivar Jemal...    93   2e-17
AY082444_1(AY082444|pid:none) Medicago sativa clone MS1-3FTa alp...    93   2e-17
Y18529_1(Y18529|pid:none) Vigna radiata mRNA for alpha-1,3-fucos...    92   3e-17
(Q9LJK1) RecName: Full=Glycoprotein 3-alpha-L-fucosyltransferase...    88   5e-16
AY302219_1(AY302219|pid:none) Arabidopsis thaliana alpha 1,3 fuc...    88   7e-16
DQ789145_1(DQ789145|pid:none) Lemna minor alpha-1,3-fucosyltrans...    88   7e-16
AJ618932_1(AJ618932|pid:none) Physcomitrella patens fuct gene fo...    87   2e-15
AY117132_1(AY117132|pid:none) Arabidopsis thaliana core alpha 1,...    87   2e-15
AJ429145_1(AJ429145|pid:none) Physcomitrella patens mRNA for alp...    86   2e-15
AJ891040_1(AJ891040|pid:none) Populus tremula x Populus alba mRN...    85   4e-15
protein update 2009. 3.30
PSORT 

 psg: 0.78  gvh: 0.52  alm: 0.17  top: -0.10  tms: 0.07  mit: 0.44  mip: 0.03
 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.36  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 20.0 %: endoplasmic reticulum
	 16.0 %: cytoplasmic
	 16.0 %: Golgi
	 16.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system

>> prediction for CHC782 is mit
5' end seq. ID CHC782F
5' end seq. 
>CHC782F.Seq
ATTTTTACCACACATTCAATTGTGTGTGTTTAATATAAATTTTGTAATAGTAGAATGTTA
AAAAAACATAGAGTTTTAATAATAGTAATTGTTATGACATTAGTTGTAATGATAAGTTAT
AGTTCAATATTAAATATAAATACAGCACAAACATCAATAAATAATCAAAAGAATGGAGTT
GGTAATAAAAATGAAGAGATGGATATTGACGATATGAAAAATGTTGAAAATGAAAAATTA
GATGCAGAAATTTTAAGAAAACAAAAGAGAGAAAGACAACAAAATGGTGAAAACGTCTTT
GATGCAAATAATATTCAAGTTGGGTTACCCGATAGTAATAATAATAATTTATTATTCGGA
AATGAGGATGATATACCAATTCAAACTACATTAAAGAAAACAGATGATAAACTTTTAATT
GAATGTTTAGTAAGAGCATCAAAACAAAATAATCAATTATCAATTGAAAAAACCAAAGAG
AATTGGTTTACCTATATGAAAAAGATATCAAGTGAAAAAAAAGAGAAATGTCATTACTCA
AATCAACGTGATTATGACGAGCAACCAGTCCGTGTCGTTAGACAGTTGACAGANNNNNNN
NNN
Length of 5' end seq. 603
3' end seq. ID CHC782Z
3' end seq. 
>CHC782Z.Seq
NNNNNNNNNNCGATGATTATGTCACAGAGAAATTATTTGGTGTTTTCACCATTGGTTCCG
TGCCCATCTATCATGGTGCCCCAAATGGTAAGAAATTCTTCCCATCCCCAAATGCCGGTA
TCTTTGTCAATGATTTTGAATCACCAGAGGATTTAGCTGCCCATTTGAAATTCTTGGATG
AAAATGATGAAGAGTATGAAAAATGTTTACAATGGAAAAAAACAGGCCCTACAAAAGATT
GGATGGTGGTTATGGACCAACTCAAGGCAAATGGTGATTGTAGAACTTGTATCAAGGTTG
CCGATCTTCAAAGAAAAGAGGTTGGTATGGTTGTTAATAAAAATACCTCAATGCAATTAG
TACCAAAATCATTCACTCCAAATGATGGTATCGTTGTATTTATTAGAGAAAGAAATACTT
TTTGGTTCACATCGGTTGCAATACCTTATTCAACTACTTATGTCGAGTTGGTTGAAATCT
TTTCAAACGCTTTAAATCATAAAGGTGAAATTTATTCAGCTAACGATCTTTGGTCAAAAG
AACCAATCATTGATTTCAAAATGAAAGATAAAACTATTAAATTAACTCAAAATCAAGCAA
ATTGAAGTTTTATTTGCAGATTTAGATTTTNTTGGGACATAGTAAAAAA
Length of 3' end seq. 649
Connected seq. ID CHC782P
Connected seq. 
>CHC782P.Seq
ATTTTTACCACACATTCAATTGTGTGTGTTTAATATAAATTTTGTAATAGTAGAATGTTA
AAAAAACATAGAGTTTTAATAATAGTAATTGTTATGACATTAGTTGTAATGATAAGTTAT
AGTTCAATATTAAATATAAATACAGCACAAACATCAATAAATAATCAAAAGAATGGAGTT
GGTAATAAAAATGAAGAGATGGATATTGACGATATGAAAAATGTTGAAAATGAAAAATTA
GATGCAGAAATTTTAAGAAAACAAAAGAGAGAAAGACAACAAAATGGTGAAAACGTCTTT
GATGCAAATAATATTCAAGTTGGGTTACCCGATAGTAATAATAATAATTTATTATTCGGA
AATGAGGATGATATACCAATTCAAACTACATTAAAGAAAACAGATGATAAACTTTTAATT
GAATGTTTAGTAAGAGCATCAAAACAAAATAATCAATTATCAATTGAAAAAACCAAAGAG
AATTGGTTTACCTATATGAAAAAGATATCAAGTGAAAAAAAAGAGAAATGTCATTACTCA
AATCAACGTGATTATGACGAGCAACCAGTCCGTGTCGTTAGACAGTTGACAGA-------
---CGATGATTATGTCACAGAGAAATTATTTGGTGTTTTCACCATTGGTTCCGTGCCCAT
CTATCATGGTGCCCCAAATGGTAAGAAATTCTTCCCATCCCCAAATGCCGGTATCTTTGT
CAATGATTTTGAATCACCAGAGGATTTAGCTGCCCATTTGAAATTCTTGGATGAAAATGA
TGAAGAGTATGAAAAATGTTTACAATGGAAAAAAACAGGCCCTACAAAAGATTGGATGGT
GGTTATGGACCAACTCAAGGCAAATGGTGATTGTAGAACTTGTATCAAGGTTGCCGATCT
TCAAAGAAAAGAGGTTGGTATGGTTGTTAATAAAAATACCTCAATGCAATTAGTACCAAA
ATCATTCACTCCAAATGATGGTATCGTTGTATTTATTAGAGAAAGAAATACTTTTTGGTT
CACATCGGTTGCAATACCTTATTCAACTACTTATGTCGAGTTGGTTGAAATCTTTTCAAA
CGCTTTAAATCATAAAGGTGAAATTTATTCAGCTAACGATCTTTGGTCAAAAGAACCAAT
CATTGATTTCAAAATGAAAGATAAAACTATTAAATTAACTCAAAATCAAGCAAATTGAAG
TTTTATTTGCAGATTTAGATTTTNTTGGGACATAGTAAAAAA
Length of connected seq. 1232
Full length Seq ID -
Full length Seq. -
Length of full length seq. -