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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC779
Library CH
(Link to library)
Clone ID CHC779
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12597-1|Contig-U16287-1
Original site URL
Representative seq. ID CHC779P
(Link to Original site)
Representative DNA sequence 
>CHC779 (CHC779Q) /CSM/CH/CHC7-D/CHC779Q.Seq.d/
AATAAAATTATTTCTTTCATTTAATATTTATATAAGTTTGGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAANGGGNCNTTTTTTTTNNNAAAAAAAAAAAAANAAANGGGNTT
TTNNNTTTTTTTNNCNNCCCCCCCNNNNAAAAAAXXXXXXXXXXAAAAGAAACCGNACTT
GATATACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCCTTTCTTCAACCA
GAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCATAAA
TTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCAC
AAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAAT
TTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGT
AGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAA
GTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCA
TGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGA
ATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATATTGTA
GTTCAAAGA
sequence update 2002.10.25
Translated Amino Acid sequence 
IKLFLSFNIYISLEKKKKKKKKKKKXGXFFXXKKKKXXGFXXFXXXPPXKK---

---KETXLDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVV
WRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLD
HGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYT
LPNLPDIVVQR
Translated Amino Acid sequence (All Frames) 
Frame A:
nkiisfi*ylykfgkkkkkkkkkkkkxxxffxkkkkxxgxxxffxxppxxk---

---krnrt*ytnscrcskwwfrctlsstrnclgf*tttc*in*wlws*iwsisigswlgr
mer*k*hsqgfgircqlswwqyanifiefltsrwsnsmpvl*lfapws*wiyrsssslsr
swyfhfqas*ktryf*ycl*wywctsrcmleiekrckskiqsl*pfr*nek*rlancily
stkltrycssk

Frame B:
IKLFLSFNIYISLEKKKKKKKKKKKXGXFFXXKKKKXXGFXXFXXXPPXKK---

---KETXLDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVV
WRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLD
HGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYT
LPNLPDIVVQR

Frame C:
*nyffhlifi*vwkkkkkkkkkkkkxgxffxxkkkxkxxfxffxxppxxk---

---kkpxliyqfmsmqqvvvslhpffnqklfgildyhvlnqlmalvinlvylhwelagsy
gevkmtftriwysmstilvaicqhfh*ishvqvvk*yastitfcamvvvdipqfiklv*i
mvfsfpsklkntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqie*eievgklhpil
yqtyqil*fk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH378 (SFH378Q) /CSM/SF/SFH3-D/SFH378Q.Seq.d/                       1114   0.0
SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/                       1114   0.0
SFG754 (SFG754Q) /CSM/SF/SFG7-C/SFG754Q.Seq.d/                       1114   0.0
SFE561 (SFE561Q) /CSM/SF/SFE5-C/SFE561Q.Seq.d/                       1114   0.0
SFD593 (SFD593Q) /CSM/SF/SFD5-D/SFD593Q.Seq.d/                       1114   0.0
SFD334 (SFD334Q) /CSM/SF/SFD3-B/SFD334Q.Seq.d/                       1114   0.0
SFC847 (SFC847Q) /CSM/SF/SFC8-B/SFC847Q.Seq.d/                       1114   0.0
SFC434 (SFC434Q) /CSM/SF/SFC4-B/SFC434Q.Seq.d/                       1114   0.0
SFC433 (SFC433Q) /CSM/SF/SFC4-B/SFC433Q.Seq.d/                       1114   0.0
SFC221 (SFC221Q) /CSM/SF/SFC2-A/SFC221Q.Seq.d/                       1114   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP11A1 5' sequence, mRNA sequence.    66   1e-09  2
AR375678|AR375678.1 Sequence 684 from patent US 6605709.           48   2e-09  3
CF811515|CF811515.2 NA716 cDNA non acclimated Bluecrop library Vaccinium corymbosum cDNA 5', mRNA sequence.    70   1e-08  2
AF352732|AF352732.1 Nicotiana tabacum glutamate decarboxylase isozyme 3 mRNA, complete cds.    58   2e-07  2
CK273593|CK273593.1 EST719671 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADC22 5' end, mRNA sequence.    50   2e-07  2
BP750112|BP750112.1 Nicotiana sylvestris mRNA, expressed in root, clone: R-032_C05.    58   3e-07  2
CN547180|CN547180.1 EST 15169 Ripe Grape Berry LambdaZapII Library Vitis vinifera cDNA clone M5SY00RB007H04 5', mRNA sequence.    64   3e-07  2
CD008053|CD008053.1 VVB082D05_335234 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB082D05 5, mRNA sequence.    64   6e-07  2
CD006712|CD006712.1 VVB066D06_332552 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB066D06 5, mRNA sequence.    64   6e-07  2
CD719214|CD719214.1 VVB158G03_410335 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB158G03 5, mRNA sequence.    64   7e-07  2
dna update 2004. 9.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...   281   1e-74
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom...   278   1e-73
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   274   2e-72
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345...   273   4e-72
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp...   270   4e-71
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...   265   1e-69
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320...   258   1e-67
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n...   256   5e-67
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul...   253   4e-66
AJ749949_1722(AJ749949|pid:none) Francisella tularensis subsp. t...   250   3e-65
protein update 2009. 3.30
PSORT 

 psg: 0.87  gvh: 0.39  alm: 0.41  top: 1.07  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.76  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: cytoplasmic

>> prediction for CHC779 is nuc
5' end seq. ID CHC779F
5' end seq. 
>CHC779F.Seq
AATAAAATTATTTCTTTCATTTAATATTTATATAAGTTTGGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAANGGGNCNTTTTTTTTNNNAAAAAAAAAAAAANAAANGGGNTT
TTNNNTTTTTTTNNCNNCCCCCCCNNNNAAAAAANNNNNNNNNN
Length of 5' end seq. 164
3' end seq. ID CHC779Z
3' end seq. 
>CHC779Z.Seq
NNNNNNNNNNAAAAGAAACCGNACTTGATATACCAATTCATGTCGATGCAGCAAGTGGTG
GTTTCGTTGCACCCTTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGTTA
AATCAATTAATGGCTCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCG
TATGGAGAGGTAAAAATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTG
GCAATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGT
ACTATAACTTTTTGCGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAG
ATCATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATG
ATGGTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAAT
TCAATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATA
CTCTACCAAACTTACCAGATATTGTAGTTCAAAGA
Length of 3' end seq. 575
Connected seq. ID CHC779P
Connected seq. 
>CHC779P.Seq
AATAAAATTATTTCTTTCATTTAATATTTATATAAGTTTGGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAANGGGNCNTTTTTTTTNNNAAAAAAAAAAAAANAAANGGGNTT
TTNNNTTTTTTTNNCNNCCCCCCCNNNNAAAAAA----------AAAAGAAACCGNACTT
GATATACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCCTTTCTTCAACCA
GAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCATAAA
TTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCAC
AAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAAT
TTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGT
AGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAA
GTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCA
TGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGA
ATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATATTGTA
GTTCAAAGA
Length of connected seq. 719
Full length Seq ID -
Full length Seq. -
Length of full length seq. -