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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC775
Library CH
(Link to library)
Clone ID CHC775
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16347-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHC775 (CHC775Q) /CSM/CH/CHC7-D/CHC775Q.Seq.d/
XXXXXXXXXXANCAATTTNTCATTGGTTGGNGATAGTGCCGGTGGTAATATGGNTATTGT
GTTGGGGTTGATGGCAAAAGTTAGAAATGGACCTTCGTTCAAGAGAATTTGTCTNTACTA
TCCAGCCATTGATAGCGGTATGAATTCAGGTTCCTATAAAGAATTCCATAATGATTTCTA
TCTTACTAAAGATGGTATGAAATGGTTCTGGGATGCATACACCAACAGTCCAAAAGACAC
CAATGAAATCTACTGCTCTCCTTCCAAATGCAAAGAATCTGATGTCATGGGTTTCCCAGA
AACAATGATCATCAATGGTGAAGCTGATGTCCTCCGTGATGAAGGTGAAAATTTCGCTAG
ACTATTACGTAAAGCAAATGTTCCAGTAACTCACCTAAGAATTCAAGCAATGGTTCATGA
TTTCGTTGCTCTAAACTGTCTTGATCAATCAAAAGCATGTAGAGTTGCAATGGATTCCTC
AATTGATTTCTTAAATAAATCTCATGATCCAAATGCAACTAAACCAAAATGTTGAAAATA
ATCAATCA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---NXSLVGDSAGGNMXIVLGLMAKVRNGPSFKRICLYYPAIDSGMNSGSYKEFHNDFYL
TKDGMKWFWDAYTNSPKDTNEIYCSPSKCKESDVMGFPETMIINGEADVLRDEGENFARL
LRKANVPVTHLRIQAMVHDFVALNCLDQSKACRVAMDSSIDFLNKSHDPNATKPKC*k*s
i
Translated Amino Acid sequence (All Frames) 
Frame A:
---xixhwlxivpvviwxlcwg*wqklemdlrsrefvxtiqpliav*iqvpiknsimisi
llkmv*ngsgmhtptvqktpmkstallpnaknlmswvsqkq*ssmvklmssvmkvkisld
yyvkqmfq*lt*efkqwfmisll*tvlinqkhvelqwipqlis*inlmiqmqlnqnvenn
qs


Frame B:
---qfxigwx*crw*ygycvgvdgks*kwtfvqenlsxlssh**ryefrfl*rip**fls
y*rwyemvlgcihqqskrhq*nlllsfqmqri*chgfprnndhqw*s*cpp**r*kfr*t
it*skcssnspknssngs*frcskls*siksm*scngfln*flk*is*skcn*tkmlkii
n


Frame C:
---NXSLVGDSAGGNMXIVLGLMAKVRNGPSFKRICLYYPAIDSGMNSGSYKEFHNDFYL
TKDGMKWFWDAYTNSPKDTNEIYCSPSKCKESDVMGFPETMIINGEADVLRDEGENFARL
LRKANVPVTHLRIQAMVHDFVALNCLDQSKACRVAMDSSIDFLNKSHDPNATKPKC*k*s
i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK657 (SFK657Q) /CSM/SF/SFK6-C/SFK657Q.Seq.d/                       1039   0.0
SFI225 (SFI225Q) /CSM/SF/SFI2-B/SFI225Q.Seq.d/                       1039   0.0
SFH139 (SFH139Q) /CSM/SF/SFH1-B/SFH139Q.Seq.d/                       1039   0.0
SFD221 (SFD221Q) /CSM/SF/SFD2-A/SFD221Q.Seq.d/                       1039   0.0
SFB211 (SFB211Q) /CSM/SF/SFB2-A/SFB211Q.Seq.d/                       1039   0.0
SFA894 (SFA894Q) /CSM/SF/SFA8-D/SFA894Q.Seq.d/                       1039   0.0
SFA889 (SFA889Q) /CSM/SF/SFA8-D/SFA889Q.Seq.d/                       1039   0.0
CHQ660 (CHQ660Q) /CSM/CH/CHQ6-C/CHQ660Q.Seq.d/                       1039   0.0
CHD871 (CHD871Q) /CSM/CH/CHD8-C/CHD871Q.Seq.d/                       1039   0.0
CHD802 (CHD802Q) /CSM/CH/CHD8-A/CHD802Q.Seq.d/                       1039   0.0
own update 2003.10. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC137069|AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.    50   0.033  1
AC068287|AC068287.5 Homo sapiens BAC clone RP11-532L9 from 2, complete sequence.    46   0.51   1
AB016893|AB016893.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYH9.    44   2.0    1
AF262040|AF262040.1 Arabidopsis thaliana BAC T10I18.               44   2.0    1
BH847631|BH847631.1 SALK_055133.39.05.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_055133.39.05.x, DNA sequence.    44   2.0    1
CC794564|CC794564.1 SALK_051698.38.85.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_051698.38.85.x, genomic survey sequence.    44   2.0    1
BX002815|BX002815.1 Arabidopsis thaliana T-DNA flanking sequence GK-367D01-017041.    44   2.0    1
BH756954|BH756954.1 SALK_054941.55.50.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_054941.55.50.x, DNA sequence.    44   2.0    1
BX002816|BX002816.1 Arabidopsis thaliana T-DNA flanking sequence GK-367D01-017046.    44   2.0    1
AX571766|AX571766.1 Sequence 4985 from Patent WO02077021.          32   2.1    12
dna update 2004. 1.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000750_1934(CP000750|pid:none) Kineococcus radiotolerans SRS30...   152   5e-36
(P14326) RecName: Full=Vegetative-specific protein H5;                149   4e-35
AP009493_770(AP009493|pid:none) Streptomyces griseus subsp. gris...   145   5e-34
AP006618_3275(AP006618|pid:none) Nocardia farcinica IFM 10152 DN...   140   3e-32
CP000431_3066(CP000431|pid:none) Rhodococcus jostii RHA1, comple...   139   6e-32
CP000826_371(CP000826|pid:none) Serratia proteamaculans 568, com...   137   2e-31
AM238663_1209(AM238663|pid:none) Streptomyces ambofaciens ATCC 2...   135   9e-31
CP000680_2613(CP000680|pid:none) Pseudomonas mendocina ymp, comp...   134   1e-30
CR628336_1860(CR628336|pid:none) Legionella pneumophila str. Par...   134   1e-30
CP000094_3993(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...   134   1e-30
protein update 2009. 5.18
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for CHC775 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHC775Z
3' end seq. 
>CHC775Z.Seq
NNNNNNNNNNANCAATTTNTCATTGGTTGGNGATAGTGCCGGTGGTAATATGGNTATTGT
GTTGGGGTTGATGGCAAAAGTTAGAAATGGACCTTCGTTCAAGAGAATTTGTCTNTACTA
TCCAGCCATTGATAGCGGTATGAATTCAGGTTCCTATAAAGAATTCCATAATGATTTCTA
TCTTACTAAAGATGGTATGAAATGGTTCTGGGATGCATACACCAACAGTCCAAAAGACAC
CAATGAAATCTACTGCTCTCCTTCCAAATGCAAAGAATCTGATGTCATGGGTTTCCCAGA
AACAATGATCATCAATGGTGAAGCTGATGTCCTCCGTGATGAAGGTGAAAATTTCGCTAG
ACTATTACGTAAAGCAAATGTTCCAGTAACTCACCTAAGAATTCAAGCAATGGTTCATGA
TTTCGTTGCTCTAAACTGTCTTGATCAATCAAAAGCATGTAGAGTTGCAATGGATTCCTC
AATTGATTTCTTAAATAAATCTCATGATCCAAATGCAACTAAACCAAAATGTTGAAAATA
ATCAATCA
Length of 3' end seq. 548
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -