CHC749
Library CH
(Link to library)
Clone ID CHC749
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHC749 (CHC749Q) /CSM/CH/CHC7-C/CHC749Q.Seq.d/
AATAAAACAGATAAATTAAAAAGTGACTACCTTTAACGAATATCCATTCTTGGCTGAATT
AGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATGGGGAGGTGCTGGTGA
AATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAACTGTTAGAGGTGCTGC
ACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAAAAGTAAAATGGGCATT
AACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCAAGCCATGAGAGAAAA
AATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAATTTACATTGAAGCTAA
AGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTGGTTTAAGTAGATCAAT
CAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAATGGAAACCTGGAATCC
ATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTGCXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
ikqin*KVTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIATVRGAA
PEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKIYIEAK
GEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPC---


Translated Amino Acid sequence (All Frames)
Frame A:
nktdklksdyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sycnc*rcc
trri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng*nlh*s*
r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfpm---


Frame B:
ikqin*KVTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIATVRGAA
PEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKIYIEAK
GEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPC---


Frame C:
*nr*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikllqllevlh
qknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwvkftlklk
vkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsishv---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFG348 (SFG348Q) /CSM/SF/SFG3-B/SFG348Q.Seq.d/ 1041 0.0
CHC749 (CHC749Q) /CSM/CH/CHC7-C/CHC749Q.Seq.d/ 1041 0.0
VFO793 (VFO793Q) /CSM/VF/VFO7-D/VFO793Q.Seq.d/ 1033 0.0
VFN595 (VFN595Q) /CSM/VF/VFN5-D/VFN595Q.Seq.d/ 1033 0.0
VFN466 (VFN466Q) /CSM/VF/VFN4-C/VFN466Q.Seq.d/ 1033 0.0
VFL522 (VFL522Q) /CSM/VF/VFL5-A/VFL522Q.Seq.d/ 1033 0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/ 1033 0.0
VFJ233 (VFJ233Q) /CSM/VF/VFJ2-B/VFJ233Q.Seq.d/ 1033 0.0
VFJ183 (VFJ183Q) /CSM/VF/VFJ1-D/VFJ183Q.Seq.d/ 1033 0.0
VFI491 (VFI491Q) /CSM/VF/VFI4-D/VFI491Q.Seq.d/ 1033 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 694 0.0 4
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence. 68 2e-10 2
CN883223|CN883223.1 010813AASB004877HT (AASB) Royal Gala 10 DAFB fruit Malus x domestica cDNA clone AASB004877, mRNA sequence. 62 1e-05 1
CN875989|CN875989.1 020813AARA008546HT (AARA) Royal Gala partially senescing leaf Malus x domestica cDNA clone AARA008546, mRNA sequence. 62 1e-05 1
CV150833|CV150833.1 Mdst6010o01.y1 Mdst Malus x domestica cDNA clone Mdst6010o01 5' similar to TR:Q9ZPB7 Q9ZPB7 PROTEIN ABUNDANTLY EXPRESSED DURING APPLE FRUIT DEVELOPMENT. ;, mRNA sequence. 60 4e-05 1
CV149734|CV149734.1 Mdst6007g23.y1 Mdst Malus x domestica cDNA clone Mdst6007g23 5' similar to TR:Q9ZPB7 Q9ZPB7 PROTEIN ABUNDANTLY EXPRESSED DURING APPLE FRUIT DEVELOPMENT. ;, mRNA sequence. 60 4e-05 1
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds. 60 4e-05 1
CN903667|CN903667.1 021018ABCA005552HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus x domestica cDNA clone ABCA005552, mRNA sequence. 60 4e-05 1
AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 36 2e-04 17
CN775057|CN775057.1 tae69b01.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5' similar to SW:DHAX_HUMAN P49419 ANTIQUITIN ;, mRNA sequence. 30 0.002 4
dna update 2004. 9.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ... 342 3e-93
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase... 210 2e-53
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ... 205 5e-52
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326... 204 1e-51
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ... 201 1e-50
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti... 200 2e-50
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas... 199 3e-50
AK160117_1(AK160117|pid:none) Mus musculus osteoclast-like cell ... 197 2e-49
(Q9DBF1) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 197 2e-49
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet... 196 4e-49
protein update 2009. 3.30
PSORT

psg: 0.78 gvh: 0.31 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: plasma membrane
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for CHC749 is cyt

5' end seq. ID CHC749F
5' end seq.
>CHC749F.Seq
AATAAAACAGATAAATTAAAAAGTGACTACCTTTAACGAATATCCATTCTTGGCTGAATT
AGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATGGGGAGGTGCTGGTGA
AATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAACTGTTAGAGGTGCTGC
ACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAAAAGTAAAATGGGCATT
AACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCAAGCCATGAGAGAAAA
AATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAATTTACATTGAAGCTAA
AGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTGGTTTAAGTAGATCAAT
CAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAATGGAAACCTGGAATCC
ATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTGCNNNNNNNNNN
Length of 5' end seq. 535
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -