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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC746
Library CH
(Link to library)
Clone ID CHC746
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16459-1
Original site URL
Representative seq. ID CHC746P
(Link to Original site)
Representative DNA sequence 
>CHC746 (CHC746Q) /CSM/CH/CHC7-B/CHC746Q.Seq.d/
CACTGTTGGCCTACTGGNTATAAATCAACAATAAAGAAAAATGAATTTTAGAGAACTTGA
TACATCAAATGGTGTTAAAGCTGCTGAAAGTTCATTCAGAACTAAAGTAGTTTTAGCAAG
AGAAATTCCATGGAATGGATTTGCATCATCAAATTCAATCACTTCAGAACAATATAATTT
AATCTCAAAATATGATAAACATACTGATGCTGAAAAGAAAGAGAAATTTGCTGCTAATAG
CGCAAGTTATGTTAACTTTTTCGTTAACTTTATTAACTCAACCAGTAATATTGAAATCAT
CCAATATTTACTCACTCTTATCAATGAAATTATTGAAATTGACCCAAGAGCAGCAGGTGC
ATTCTCAAAAATTACCAAAGATGACGATAAATCATACCCATATTCAGTATTCTTTAGATT
ATTAAATCGTGAAGATGCTTACACTAACCTCCACGCAAGTATTGCTCTTGCACAAATCAT
GTGTGCTGGTAAACCAACTCAAAATGATGTTGAATCATTTTTCAATTGGATTCTCAAXXX
XXXXXXXCAGTTAATATTNCAATTATTATATGAACTATTTATGCAATTTGGTTATTAACC
CTATAATAAAGATATTGCAGCAGCTTATTCAGGAANTGGTTTAGTTGCAAATTTAGTTCA
ACTCGTCAAAACTGTAGCCAAGGAAAAGATTGTTAGATTATCATTATCAACCTTGAGAAA
TCTTTTAAACAATGGTAAGAGTAACGAAGAAATGATCGATAATGGTTTCGTTCGTATGTT
AAATATTTTAAATATTAAAAAATGGGGTGATGATGATATTCCAGCTGATATTGAAGTTTT
AATTAATGGTCTTGCTAAAGATATTGATAATATGAGTTCATTTAATAAATATAAAACTGA
AATTATTTCAGGTGAATTAGAATGGACACCAGTTCATAAATCAGAGAGATTCTGGAAAGA
GAATATCTCAAAATTCGAAGAAAACAACTATCAAGTCATTAAACACTTACATCAAATTTT
AAAGACAAGTCAATCAACTCCACTTCAATTATCAATTGCATGTCATGATCTTGGTGAATT
CGTTAGACATCATAGTCGTGGTAAAGCTATCATCGACTATTTACAAATCAAACCAGATAT
CATGGGTATGATGTCAAATCAAAATGAAGAAGTAAAGAAACAAGCTTTATTCGCTTTACA
AAAAATGCATGTTAAATAATTGGGAATATTT
sequence update 2002.10.25
Translated Amino Acid sequence 
tvgllxinqq*RKMNFRELDTSNGVKAAESSFRTKVVLAREIPWNGFASSNSITSEQYNL
ISKYDKHTDAEKKEKFAANSASYVNFFVNFINSTSNIEIIQYLLTLINEIIEIDPRAAGA
FSKITKDDDKSYPYSVFFRLLNREDAYTNLHASIALAQIMCAGKPTQNDVESFFNWIL--
-

---QLIXQLLYELFMQFGY*pynkdiaaaysgxglvanlvqlvktvakekivrlslstlr
nllnngksneemidngfvrmlnilnikkwgdddipadievlinglakdidnmssfnkykt
eiisgelewtpvhkserfwkeniskfeennyqvikhlhqilktsqstplqlsiachdlge
fvrhhsrgkaiidylqikpdimgmmsnqneevkkqalfalqkmhvk*lgif
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgykstikknef*rt*yikwc*sc*kfiqn*ssfskrnsmewiciikfnhfrti*f
nlki**ty*c*kereicc**rklc*lfr*ly*lnq*y*nhpifthsyq*ny*n*pkssrc
ilknyqr*r*iipifsil*iiks*rclh*pprkycsctnhvcw*tnsk*c*iifqldsq-
--

---QLIXQLLYELFMQFGY*pynkdiaaaysgxglvanlvqlvktvakekivrlslstlr
nllnngksneemidngfvrmlnilnikkwgdddipadievlinglakdidnmssfnkykt
eiisgelewtpvhkserfwkeniskfeennyqvikhlhqilktsqstplqlsiachdlge
fvrhhsrgkaiidylqikpdimgmmsnqneevkkqalfalqkmhvk*lgif

Frame B:
tvgllxinqq*RKMNFRELDTSNGVKAAESSFRTKVVLAREIPWNGFASSNSITSEQYNL
ISKYDKHTDAEKKEKFAANSASYVNFFVNFINSTSNIEIIQYLLTLINEIIEIDPRAAGA
FSKITKDDDKSYPYSVFFRLLNREDAYTNLHASIALAQIMCAGKPTQNDVESFFNWIL--
-

---s*yxnyymnylcnlvinpiikilqqliqexv*lqi*fnsskl*prkrlldyhyqp*e
if*tmvrvtkk*simvsfvc*if*ilkngvmmifqlilkf*lmvllkilii*vhlinikl
klfqvn*nghqfinqrdsgkrisqnskkttikslntyikf*rqvnqlhfnyqlhvmilvn
sldiivvvklsstiyksnqiswv*cqikmkk*rnklyslykkcmlnnwey

Frame C:
llaywx*innkek*ilenlihqmvlkllkvhselk*f*qekfhgmdlhhqiqslqnnii*
sqnminilmlkrkrnllliaqvmltfsltlltqpvilkssniysllsmkllkltqeqqvh
sqklpkmtinhthiqysldy*ivkmltltstqvlllhkscvlvnqlkmmlnhfsigfs--
-

---vnixiii*tiyaiwlltl**rycsslfrxwfsckfsstrqncsqgkdc*iiiinlek
sfkqw*e*rrndr*wfrsyvkyfky*kmg***yss*y*sfn*wsc*ry**yefi**i*n*
nyfr*irmdtss*ireilereylkirrkqlssh*tltsnfkdksinstsiincms*sw*i
r*ts*sw*syhrlftnqtryhgydvksk*rsketsfirftknac*iigni
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHC746 (CHC746Q) /CSM/CH/CHC7-B/CHC746Q.Seq.d/                       2363   0.0
VFJ407 (VFJ407Q) /CSM/VF/VFJ4-A/VFJ407Q.Seq.d/                       1289   0.0
VFK361 (VFK361Q) /CSM/VF/VFK3-C/VFK361Q.Seq.d/                       1281   0.0
SFI212 (SFI212Q) /CSM/SF/SFI2-A/SFI212Q.Seq.d/                       1273   0.0
VFE191 (VFE191Q) /CSM/VF/VFE1-D/VFE191Q.Seq.d/                       1267   0.0
VFH723 (VFH723Q) /CSM/VF/VFH7-A/VFH723Q.Seq.d/                       1265   0.0
VFN337 (VFN337Q) /CSM/VF/VFN3-B/VFN337Q.Seq.d/                       1255   0.0
VSH764 (VSH764Q) /CSM/VS/VSH7-C/VSH764Q.Seq.d/                       1245   0.0
AFI780 (AFI780Q) /CSM/AF/AFI7-D/AFI780Q.Seq.d/                       1245   0.0
CHA268 (CHA268Q) /CSM/CH/CHA2-C/CHA268Q.Seq.d/                       1239   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***.   543   0.0    16
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.   543   0.0    18
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          36   7e-09  29
AB063521|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2.    36   1e-06  18
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    34   2e-06  16
AP004170|AP004170.1 Mycoplasma penetrans HF-2 DNA, complete genome, section 1/5.    40   2e-06  19
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    38   1e-05  18
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    32   2e-05  19
AE017338|AE017338.1 Mycoplasma mobile 163K section 2 of 3 of...    30   2e-05  22
AP004173|AP004173.1 Mycoplasma penetrans HF-2 DNA, complete genome, section 4/5.    34   4e-05  17
dna update 2004. 9.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC103432_1(BC103432|pid:none) Bos taurus ATPase, H+ transporting...   172   2e-41
AJ223757_1(AJ223757|pid:none) Sus scrofa mRNA for 54 kDa vacuola...   172   2e-41
CR859724_1(CR859724|pid:none) Pongo abelii mRNA; cDNA DKFZp468E0...   170   1e-40
AE014134_2844(AE014134|pid:none) Drosophila melanogaster chromos...   168   4e-40
(Q9V3J1) RecName: Full=V-type proton ATPase subunit H;          ...   167   5e-40
AC148241_13(AC148241|pid:none) Medicago truncatula clone mth2-14...   167   5e-40
(Q619W9) RecName: Full=Probable V-type proton ATPase subunit H 2...   163   1e-38
AF506234_1(AF506234|pid:none) Danio rerio vacuolar ATP synthase ...   162   2e-38
DQ443403_1(DQ443403|pid:none) Bombyx mori vacuolar ATP synthase ...   151   5e-35
AF159457_1(AF159457|pid:none) Drosophila melanogaster vacuolar A...   150   8e-35
protein update 2009. 3.30
PSORT 

 psg: 0.70  gvh: 0.40  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CHC746 is cyt
5' end seq. ID CHC746F
5' end seq. 
>CHC746F.Seq
CACTGTTGGCCTACTGGNTATAAATCAACAATAAAGAAAAATGAATTTTAGAGAACTTGA
TACATCAAATGGTGTTAAAGCTGCTGAAAGTTCATTCAGAACTAAAGTAGTTTTAGCAAG
AGAAATTCCATGGAATGGATTTGCATCATCAAATTCAATCACTTCAGAACAATATAATTT
AATCTCAAAATATGATAAACATACTGATGCTGAAAAGAAAGAGAAATTTGCTGCTAATAG
CGCAAGTTATGTTAACTTTTTCGTTAACTTTATTAACTCAACCAGTAATATTGAAATCAT
CCAATATTTACTCACTCTTATCAATGAAATTATTGAAATTGACCCAAGAGCAGCAGGTGC
ATTCTCAAAAATTACCAAAGATGACGATAAATCATACCCATATTCAGTATTCTTTAGATT
ATTAAATCGTGAAGATGCTTACACTAACCTCCACGCAAGTATTGCTCTTGCACAAATCAT
GTGTGCTGGTAAACCAACTCAAAATGATGTTGAATCATTTTTCAATTGGATTCTCAANNN
NNNNNNN
Length of 5' end seq. 547
3' end seq. ID CHC746Z
3' end seq. 
>CHC746Z.Seq
NNNNNNNNNNCAGTTAATATTNCAATTATTATATGAACTATTTATGCAATTTGGTTATTA
ACCCTATAATAAAGATATTGCAGCAGCTTATTCAGGAANTGGTTTAGTTGCAAATTTAGT
TCAACTCGTCAAAACTGTAGCCAAGGAAAAGATTGTTAGATTATCATTATCAACCTTGAG
AAATCTTTTAAACAATGGTAAGAGTAACGAAGAAATGATCGATAATGGTTTCGTTCGTAT
GTTAAATATTTTAAATATTAAAAAATGGGGTGATGATGATATTCCAGCTGATATTGAAGT
TTTAATTAATGGTCTTGCTAAAGATATTGATAATATGAGTTCATTTAATAAATATAAAAC
TGAAATTATTTCAGGTGAATTAGAATGGACACCAGTTCATAAATCAGAGAGATTCTGGAA
AGAGAATATCTCAAAATTCGAAGAAAACAACTATCAAGTCATTAAACACTTACATCAAAT
TTTAAAGACAAGTCAATCAACTCCACTTCAATTATCAATTGCATGTCATGATCTTGGTGA
ATTCGTTAGACATCATAGTCGTGGTAAAGCTATCATCGACTATTTACAAATCAAACCAGA
TATCATGGGTATGATGTCAAATCAAAATGAAGAAGTAAAGAAACAAGCTTTATTCGCTTT
ACAAAAAATGCATGTTAAATAATTGGGAATATTT
Length of 3' end seq. 694
Connected seq. ID CHC746P
Connected seq. 
>CHC746P.Seq
CACTGTTGGCCTACTGGNTATAAATCAACAATAAAGAAAAATGAATTTTAGAGAACTTGA
TACATCAAATGGTGTTAAAGCTGCTGAAAGTTCATTCAGAACTAAAGTAGTTTTAGCAAG
AGAAATTCCATGGAATGGATTTGCATCATCAAATTCAATCACTTCAGAACAATATAATTT
AATCTCAAAATATGATAAACATACTGATGCTGAAAAGAAAGAGAAATTTGCTGCTAATAG
CGCAAGTTATGTTAACTTTTTCGTTAACTTTATTAACTCAACCAGTAATATTGAAATCAT
CCAATATTTACTCACTCTTATCAATGAAATTATTGAAATTGACCCAAGAGCAGCAGGTGC
ATTCTCAAAAATTACCAAAGATGACGATAAATCATACCCATATTCAGTATTCTTTAGATT
ATTAAATCGTGAAGATGCTTACACTAACCTCCACGCAAGTATTGCTCTTGCACAAATCAT
GTGTGCTGGTAAACCAACTCAAAATGATGTTGAATCATTTTTCAATTGGATTCTCAA---
-------CAGTTAATATTNCAATTATTATATGAACTATTTATGCAATTTGGTTATTAACC
CTATAATAAAGATATTGCAGCAGCTTATTCAGGAANTGGTTTAGTTGCAAATTTAGTTCA
ACTCGTCAAAACTGTAGCCAAGGAAAAGATTGTTAGATTATCATTATCAACCTTGAGAAA
TCTTTTAAACAATGGTAAGAGTAACGAAGAAATGATCGATAATGGTTTCGTTCGTATGTT
AAATATTTTAAATATTAAAAAATGGGGTGATGATGATATTCCAGCTGATATTGAAGTTTT
AATTAATGGTCTTGCTAAAGATATTGATAATATGAGTTCATTTAATAAATATAAAACTGA
AATTATTTCAGGTGAATTAGAATGGACACCAGTTCATAAATCAGAGAGATTCTGGAAAGA
GAATATCTCAAAATTCGAAGAAAACAACTATCAAGTCATTAAACACTTACATCAAATTTT
AAAGACAAGTCAATCAACTCCACTTCAATTATCAATTGCATGTCATGATCTTGGTGAATT
CGTTAGACATCATAGTCGTGGTAAAGCTATCATCGACTATTTACAAATCAAACCAGATAT
CATGGGTATGATGTCAAATCAAAATGAAGAAGTAAAGAAACAAGCTTTATTCGCTTTACA
AAAAATGCATGTTAAATAATTGGGAATATTT
Length of connected seq. 1221
Full length Seq ID -
Full length Seq. -
Length of full length seq. -