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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CHC625
Library CH
(Link to library)
Clone ID CHC625
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CHC625P
(Link to Original site)
Representative DNA sequence 
>CHC625 (CHC625Q) /CSM/CH/CHC6-B/CHC625Q.Seq.d/
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAAATTTAAAAANTCNCCTTTTTTGAAAAAAAAAA
XXXXXXXXXXGNNAANNNTNTNNCNNNNNAAGTTNAANGGTAGTNNNNNCTTTGANAATT
NAAAANNAAANNTTNAANANAAAANAAGGTTTTCCNCCNNNNTNAANAANGTNTTNATTT
TNNGNTGGTAAACAATTAAAANAGGGTNGNANTNTNTNTGATNNCAATATCCAAAAAGAA
TCAANTTTTCCANTTGGTCCTNAGATTAANAGGGTGGTATGCAAATNTTTGTCAAAACAT
TAANTGGTAAGACCATCACTNTTGAAGTTGAGGGTCAGATAATATTGAAAATGTTAAAAC
AAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGNTGGTAA
ACAATTAGAAGATGGTCGTACTCTCTNTGATTACAACATTCAAAAGGAATCCACTCTCCA
TTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGAC
TATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGA
CAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGA
TGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAG
ATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGA
AGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTAT
CCCA
sequence update 2002.10.25
Translated Amino Acid sequence 
ihfyytnikfifyffiycnis*KKKKKKKFKXSPFLKKK---

---XXXXXXSXXVVXXLXIXXXXXXXKXGFPPXXXXXXFXXGKQLKXGXXXXDXNIQKES
XFPXGPXIXRVVCKXLSKH*xvrpsllklrvr*y*kc*nkdsrqrryptrptkinfrw*t
irrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprq
rrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs
*r**qh*ecknknsrqrryp
Translated Amino Acid sequence (All Frames) 
Frame A:
kfifiiqilnsyfiflyivtfhkkkkkkknlkxxlf*kkk---

---xxxxxxxvxx*xxl*xxkxkxxxxxkvfxxxxxxxxfxxvnn*xrvxxxxxxiskkn
qxfxlvlrlxgwyanxcqnixw*dhhx*s*gsdnienvktkiqdkegippdqqrlifxgk
qledgrtlxdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqd
kegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitle
vegsdnienvktkiqdkegip

Frame B:
nsfllyky*ihilffyil*hfikkkkkkki*kxxffekk---

---xxxxxxkxxgsxxfxnxkxxxxxkxrfsxxxxxvxixxw*tikxgxxxx*xqypkri
xfsxwsxd*xggmqxfvktlxgktitxevegqiilkmlkqrfktkkvshqtnkd*fsxvn
n*kmvvlsxittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpkskt
kkvfhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsk
lkvvttlrm*kqkfktkkvs

Frame C:
ihfyytnikfifyffiycnis*KKKKKKKFKXSPFLKKK---

---XXXXXXSXXVVXXLXIXXXXXXXKXGFPPXXXXXXFXXGKQLKXGXXXXDXNIQKES
XFPXGPXIXRVVCKXLSKH*xvrpsllklrvr*y*kc*nkdsrqrryptrptkinfrw*t
irrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprq
rrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs
*r**qh*ecknknsrqrryp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHC625 (CHC625Q) /CSM/CH/CHC6-B/CHC625Q.Seq.d/                       1213   0.0
SFB295 (SFB295Q) /CSM/SF/SFB2-D/SFB295Q.Seq.d/                       1148   0.0
CHB622 (CHB622Q) /CSM/CH/CHB6-A/CHB622Q.Seq.d/                       1148   0.0
CHD594 (CHD594Q) /CSM/CH/CHD5-D/CHD594Q.Seq.d/                       1142   0.0
CHE489 (CHE489Q) /CSM/CH/CHE4-D/CHE489Q.Seq.d/                       1140   0.0
CFB804 (CFB804Q) /CSM/CF/CFB8-A/CFB804Q.Seq.d/                       1138   0.0
CFB156 (CFB156Q) /CSM/CF/CFB1-C/CFB156Q.Seq.d/                       1138   0.0
AFO836 (AFO836Q) /CSM/AF/AFO8-B/AFO836Q.Seq.d/                       1138   0.0
AFL193 (AFL193Q) /CSM/AF/AFL1-D/AFL193Q.Seq.d/                       1138   0.0
VFI676 (VFI676Q) /CSM/VF/VFI6-D/VFI676Q.Seq.d/                       1136   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   991   0.0    3
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   983   0.0    3
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   983   0.0    3
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   628   0.0    3
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   597   0.0    3
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   581   e-177  3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   456   e-135  3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   456   e-135  3
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      159   1e-81  6
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   109   8e-80  5
dna update 2004. 9.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   332   4e-92
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   332   4e-92
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   332   4e-92
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   328   6e-91
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...   328   1e-88
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   317   2e-87
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   317   2e-87
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   314   8e-87
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   314   8e-87
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   314   8e-87
protein update 2009. 3.30
PSORT 

 psg: 0.55  gvh: 0.54  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.40  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CHC625 is nuc
5' end seq. ID CHC625F
5' end seq. 
>CHC625F.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAAATTTAAAAANTCNCCTTTTTTGAAAAAAAAAA
NNNNNNNNNN
Length of 5' end seq. 130
3' end seq. ID CHC625Z
3' end seq. 
>CHC625Z.Seq
NNNNNNNNNNGNNAANNNTNTNNCNNNNNAAGTTNAANGGTAGTNNNNNCTTTGANAATT
NAAAANNAAANNTTNAANANAAAANAAGGTTTTCCNCCNNNNTNAANAANGTNTTNATTT
TNNGNTGGTAAACAATTAAAANAGGGTNGNANTNTNTNTGATNNCAATATCCAAAAAGAA
TCAANTTTTCCANTTGGTCCTNAGATTAANAGGGTGGTATGCAAATNTTTGTCAAAACAT
TAANTGGTAAGACCATCACTNTTGAAGTTGAGGGTCAGATAATATTGAAAATGTTAAAAC
AAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGNTGGTAA
ACAATTAGAAGATGGTCGTACTCTCTNTGATTACAACATTCAAAAGGAATCCACTCTCCA
TTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGAC
TATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGA
CAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGA
TGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAG
ATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGA
AGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTAT
CCCA
Length of 3' end seq. 784
Connected seq. ID CHC625P
Connected seq. 
>CHC625P.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAAATTTAAAAANTCNCCTTTTTTGAAAAAAAAAA
----------GNNAANNNTNTNNCNNNNNAAGTTNAANGGTAGTNNNNNCTTTGANAATT
NAAAANNAAANNTTNAANANAAAANAAGGTTTTCCNCCNNNNTNAANAANGTNTTNATTT
TNNGNTGGTAAACAATTAAAANAGGGTNGNANTNTNTNTGATNNCAATATCCAAAAAGAA
TCAANTTTTCCANTTGGTCCTNAGATTAANAGGGTGGTATGCAAATNTTTGTCAAAACAT
TAANTGGTAAGACCATCACTNTTGAAGTTGAGGGTCAGATAATATTGAAAATGTTAAAAC
AAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGNTGGTAA
ACAATTAGAAGATGGTCGTACTCTCTNTGATTACAACATTCAAAAGGAATCCACTCTCCA
TTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGAC
TATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGA
CAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGA
TGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAG
ATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGA
AGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTAT
CCCA
Length of connected seq. 894
Full length Seq ID -
Full length Seq. -
Length of full length seq. -