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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHC603
Library CH
(Link to library)
Clone ID CHC603
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16295-1
Original site URL
Representative seq. ID CHC603P
(Link to Original site)
Representative DNA sequence 
>CHC603 (CHC603Q) /CSM/CH/CHC6-A/CHC603Q.Seq.d/
ATTTAATTAAATTGGAAGACAATGGCTTTTTTAATTCATAGTTTTTTATGTATATTTTTG
ATTTCTTATATTTCCATATCAGTTAATGGTCAAATATTAACATGGTTTGATGTAAACAAC
AATCCAGACTTTGATATGGACGAAGTTCAAGATAATACATTTTCAATGGATTATTTATTA
GCTAAATCTCAATTCACACCAGATGGACTTTCAATGACATATTCATATGGAAATAGCCCA
ACATATGATGAAATAACTGAAAAGATTTTATTGGTCCATAATGAATCAACTTTTAATGGT
TGGACATATGCAGAAGAAGGTTCAAAAACAACTACATCTGGTTTTAAATATTTTGATTTT
ACAAAACATTATTACAATGATAAATTCTTTCCAGTTGATAGTTTAGGTTTTGGAAATAAT
GGATTGGATCATAATTATAAATGGTGCGCAAGATTACATTTTGTAAGCTTTTTCCCACCA
GATAATCCTCCAATGAATTTTTATGCATCGCATTCTGATGATCTTTTTATTTTCATTGAT
GGTGTTTCAGTTTATTCTTATATTGGAATTACTGATAAATCAXXXXXXXXXXGNGGNAGN
GNNNGTCCNNNNNNNNNNGNCCCNNGNNCNNTTNNCNNATGTGGNCNNGGNNNNCGNTGT
NANAANANTNATGNTTCNCCNANNTGGATTANNNCCGCCNGNTNATCATGTGAAGATTTA
GATTGCCCTTCCCAAGGATTGAAATGTATATCCTTTAAAGTTAACAGGCATAAAAATATT
ACATGNAGAGTCTGNTGCCAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
i*LNWKTMAFLIHSFLCIFLISYISISVNGQILTWFDVNNNPDFDMDEVQDNTFSMDYLL
AKSQFTPDGLSMTYSYGNSPTYDEITEKILLVHNESTFNGWTYAEEGSKTTTSGFKYFDF
TKHYYNDKFFPVDSLGFGNNGLDHNYKWCARLHFVSFFPPDNPPMNFYASHSDDLFIFID
GVSVYSYIGITDKS---

---GXXXPXXXXPXXXXXCGXGXRCXXXXXSPXWIXXAXXSCEDLDCPSQGLKCISFKVN
RHKNITXRVXCQ
Translated Amino Acid sequence (All Frames) 
Frame A:
i*LNWKTMAFLIHSFLCIFLISYISISVNGQILTWFDVNNNPDFDMDEVQDNTFSMDYLL
AKSQFTPDGLSMTYSYGNSPTYDEITEKILLVHNESTFNGWTYAEEGSKTTTSGFKYFDF
TKHYYNDKFFPVDSLGFGNNGLDHNYKWCARLHFVSFFPPDNPPMNFYASHSDDLFIFID
GVSVYSYIGITDKS---

---xxxxvxxxxxxxxxxxvxxxxxvxxxmxxxxglxppxxhvki*ialpkd*nvyplkl
tgikilhxesxan

Frame B:
fn*igrqwlf*fivfyvyf*flifpyqlmvky*hglm*ttiqtliwtkfkiihfqwiiy*
lnlnshqmdfq*hihmeiaqhmmk*lkrfywsimnqllmvghmqkkvqkqlhlvlnilil
qniitminsfqliv*vleimdwiiiingaqdyil*afshqiilq*ifmhrilmiflfslm
vfqfililellin---

---xxxxsxxxxpxxxxxmwxxxxxxxxxxfxxxdxxrxxim*rfrlpfpriemyil*s*
qa*kyymxslxpi

Frame C:
likledngffns*ffmyifdflyfhis*wsninmv*ckqqsrl*ygrssr*yifnglfis
*isihtrwtfndifiwk*pni**nn*kdfigp**inf*wldicrrrfknnyiwf*if*fy
ktllq**ilss**frfwk*wigs*l*mvrkitfcklfptr*ssneflciaf**sfyfh*w
cfslflywny**i---

---GXXXPXXXXPXXXXXCGXGXRCXXXXXSPXWIXXAXXSCEDLDCPSQGLKCISFKVN
RHKNITXRVXCQ
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE256 (SLE256Q) /CSM/SL/SLE2-C/SLE256Q.Seq.d/                       1027   0.0
SFK288 (SFK288Q) /CSM/SF/SFK2-D/SFK288Q.Seq.d/                       1027   0.0
SFJ874 (SFJ874Q) /CSM/SF/SFJ8-D/SFJ874Q.Seq.d/                       1027   0.0
SFI571 (SFI571Q) /CSM/SF/SFI5-C/SFI571Q.Seq.d/                       1027   0.0
SFI558 (SFI558Q) /CSM/SF/SFI5-C/SFI558Q.Seq.d/                       1027   0.0
SFH433 (SFH433Q) /CSM/SF/SFH4-B/SFH433Q.Seq.d/                       1027   0.0
SFG459 (SFG459Q) /CSM/SF/SFG4-C/SFG459Q.Seq.d/                       1027   0.0
SFF613 (SFF613Q) /CSM/SF/SFF6-A/SFF613Q.Seq.d/                       1027   0.0
SFF180 (SFF180Q) /CSM/SF/SFF1-D/SFF180Q.Seq.d/                       1027   0.0
SFD634 (SFD634Q) /CSM/SF/SFD6-B/SFD634Q.Seq.d/                       1027   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.   617  0.0  6
AL606516|AL606516.3 Human DNA sequence from clone RP11-87M18 on chromosome X.    40  0.28  5
CC266107|CC266107.1 CH261-59A5_RM1.1 CH261 Gallus gallus genomic clone CH261-59A5, DNA sequence.    38  1.2  2
AQ535164|AQ535164.1 RPCI-11-409E22.TV RPCI-11 Homo sapiens genomic clone RPCI-11-409E22, genomic survey sequence.    30  1.2  3
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    36  1.4  9
AC004701|AC004701.1 Homo sapiens chromosome 4 clone B331M8 map 4q25, complete sequence.    44  1.6  4
AQ548708|AQ548708.1 RPCI-11-409E22.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-409E22, genomic survey sequence.    30  1.9  3
AL596187|AL596187.15 Mouse DNA sequence from clone RP23-287H9 on chromosome 11.    44  2.6  1
AC079099|AC079099.2 Homo sapiens chromosome 4 clone RP11-107A3 map 4, WORKING DRAFT SEQUENCE, 33 unordered pieces.    44  2.6  1
BB269553|BB269553.1 Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830041F01, 3' end partial sequence, similar to ddbj:AL080235 Homo sapiens mRNA; cDNA DKFZp586E1621 (from clone DKFZp586E1621).    44  2.6  1
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 53   9e-06
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 52   3e-05
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 51   4e-05
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 49   1e-04
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 48   4e-04
AM746676_5746(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    47   9e-04
AM746676_9122(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    43   0.010
CP000155_6215(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    43   0.013
CP001281_1144(CP001281|pid:none) Thauera sp. MZ1T, complete geno...    43   0.013
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 42   0.017
protein update 2009. 4.12
PSORT 

 psg: 0.98  gvh: 0.59  alm: 0.25  top: -0.03  tms: 0.07  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: Golgi
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for CHC603 is end
5' end seq. ID CHC603F
5' end seq. 
>CHC603F.Seq
ATTTAATTAAATTGGAAGACAATGGCTTTTTTAATTCATAGTTTTTTATGTATATTTTTG
ATTTCTTATATTTCCATATCAGTTAATGGTCAAATATTAACATGGTTTGATGTAAACAAC
AATCCAGACTTTGATATGGACGAAGTTCAAGATAATACATTTTCAATGGATTATTTATTA
GCTAAATCTCAATTCACACCAGATGGACTTTCAATGACATATTCATATGGAAATAGCCCA
ACATATGATGAAATAACTGAAAAGATTTTATTGGTCCATAATGAATCAACTTTTAATGGT
TGGACATATGCAGAAGAAGGTTCAAAAACAACTACATCTGGTTTTAAATATTTTGATTTT
ACAAAACATTATTACAATGATAAATTCTTTCCAGTTGATAGTTTAGGTTTTGGAAATAAT
GGATTGGATCATAATTATAAATGGTGCGCAAGATTACATTTTGTAAGCTTTTTCCCACCA
GATAATCCTCCAATGAATTTTTATGCATCGCATTCTGATGATCTTTTTATTTTCATTGAT
GGTGTTTCAGTTTATTCTTATATTGGAATTACTGATAAATCANNNNNNNNNN
Length of 5' end seq. 592
3' end seq. ID CHC603Z
3' end seq. 
>CHC603Z.Seq
NNNNNNNNNNGNGGNAGNGNNNGTCCNNNNNNNNNNGNCCCNNGNNCNNTTNNCNNATGT
GGNCNNGGNNNNCGNTGTNANAANANTNATGNTTCNCCNANNTGGATTANNNCCGCCNGN
TNATCATGTGAAGATTTAGATTGCCCTTCCCAAGGATTGAAATGTATATCCTTTAAAGTT
AACAGGCATAAAAATATTACATGNAGAGTCTGNTGCCAATA
Length of 3' end seq. 221
Connected seq. ID CHC603P
Connected seq. 
>CHC603P.Seq
ATTTAATTAAATTGGAAGACAATGGCTTTTTTAATTCATAGTTTTTTATGTATATTTTTG
ATTTCTTATATTTCCATATCAGTTAATGGTCAAATATTAACATGGTTTGATGTAAACAAC
AATCCAGACTTTGATATGGACGAAGTTCAAGATAATACATTTTCAATGGATTATTTATTA
GCTAAATCTCAATTCACACCAGATGGACTTTCAATGACATATTCATATGGAAATAGCCCA
ACATATGATGAAATAACTGAAAAGATTTTATTGGTCCATAATGAATCAACTTTTAATGGT
TGGACATATGCAGAAGAAGGTTCAAAAACAACTACATCTGGTTTTAAATATTTTGATTTT
ACAAAACATTATTACAATGATAAATTCTTTCCAGTTGATAGTTTAGGTTTTGGAAATAAT
GGATTGGATCATAATTATAAATGGTGCGCAAGATTACATTTTGTAAGCTTTTTCCCACCA
GATAATCCTCCAATGAATTTTTATGCATCGCATTCTGATGATCTTTTTATTTTCATTGAT
GGTGTTTCAGTTTATTCTTATATTGGAATTACTGATAAATCA----------GNGGNAGN
GNNNGTCCNNNNNNNNNNGNCCCNNGNNCNNTTNNCNNATGTGGNCNNGGNNNNCGNTGT
NANAANANTNATGNTTCNCCNANNTGGATTANNNCCGCCNGNTNATCATGTGAAGATTTA
GATTGCCCTTCCCAAGGATTGAAATGTATATCCTTTAAAGTTAACAGGCATAAAAATATT
ACATGNAGAGTCTGNTGCCAATA
Length of connected seq. 793
Full length Seq ID -
Full length Seq. -
Length of full length seq. -