CHC596
Library CH
(Link to library)
Clone ID CHC596
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHC596P
(Link to Original site)
Representative DNA sequence
>CHC596 (CHC596Q) /CSM/CH/CHC5-D/CHC596Q.Seq.d/
AAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAAGATT
TCTTTTTCTTTTTTTGAAATNGGTNTAATTAAAAATGTNTAGTAAAAAATATNCATCCTT
TGTAATAGTATTGATTTTATCATGTNTCATTTCAACATGTNCATCTAATCAAATTTNTGA
AGATGNGGGTAAAGCAATTAATCAAAAATTAAATGAAAATNTTGAAAAAGTTGAANATGX
XXXXXXXXXCTCATACATTCGCTGGTACAGATTCAGTCGGTGTAACTGGTTTCCATATAA
TTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATCAACAATACATTG
ATAAATCNTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATTACAAA
GTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAG
ATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAAC
GTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTAC
AAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCA
ATCANCAAGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATATGAAC
TTTTATTAGATCAACTCTATGATGAACAACAACAATCTCCTGACCTTTATTAAAAAATCA
GTTAAAAAAATATTCA
sequence update 2002.10.25
Translated Amino Acid sequence
nnrnnkn*y*kkgtlkkkrflflflkxv*LKMXSKKYXSFVIVLILSCXISTCXSNQIXE
DXGKAINQKLNENXEKVEX---

---HTFAGTDSVGVTGFHIITKTFNLIAGGKFNSDQQYIDKSYGSIPSQDNEEIKKRLQS
AHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNTLKEMQIQRENQDIGQQNQEDKEQLIDLQ
NREPGLYKNQQDLKQEKRANXQELINYELNLQEDQEQYELLLDQLYDEQQQSPDLY*kis
*kni


Translated Amino Acid sequence (All Frames)
Frame A:
k**k**klilkkrnvkkkkisfsffexgxiknv**kixilcnsidfimxhfnmxi*snx*
rxg*sn*skik*kx*ks*x---

---lihslvqiqsv*lvsi*lqrlli*llvvnltlinntlinxtvqfhhkimkklkrdyk
vlinnyknnhlqsinq*nlki*ki*mmk*fvillrkckfnvkikilvnkikkiknn*liy
kienlvytkinkilnkrkepixkn*simn*iykkiknnmnfy*insmmnnnnlltfikks
vkkif

Frame B:
nnrnnkn*y*kkgtlkkkrflflflkxv*LKMXSKKYXSFVIVLILSCXISTCXSNQIXE
DXGKAINQKLNENXEKVEX---

---syirwyrfsrcnwfpynykdf*fdcww*i*l*stih**ixrfnsitr**rn*keitk
csstitrtitcnlsinei*rskkfr**sns*ys*gnanst*ksrywstksrr*rtin*ft
k*rtwfiqkstrs*treksqsxrinql*ieftrrsrti*tfirstl**tttis*pllknq
lkkys

Frame C:
iieiikinikkker*kkkdfffff*nxxn*kcxvknxhpl**y*fyhvsfqhvhlikfxk
mxvkqlikn*mkxlkklxm---

---HTFAGTDSVGVTGFHIITKTFNLIAGGKFNSDQQYIDKSYGSIPSQDNEEIKKRLQS
AHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNTLKEMQIQRENQDIGQQNQEDKEQLIDLQ
NREPGLYKNQQDLKQEKRANXQELINYELNLQEDQEQYELLLDQLYDEQQQSPDLY*kis
*kni

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHC596 (CHC596Q) /CSM/CH/CHC5-D/CHC596Q.Seq.d/ 1273 0.0
AFK694 (AFK694Q) /CSM/AF/AFK6-D/AFK694Q.Seq.d/ 1011 0.0
SFJ324 (SFJ324Q) /CSM/SF/SFJ3-A/SFJ324Q.Seq.d/ 991 0.0
CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/ 991 0.0
CHC215 (CHC215Q) /CSM/CH/CHC2-A/CHC215Q.Seq.d/ 991 0.0
CFH714 (CFH714Q) /CSM/CF/CFH7-A/CFH714Q.Seq.d/ 991 0.0
CFG751 (CFG751Q) /CSM/CF/CFG7-C/CFG751Q.Seq.d/ 991 0.0
CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/ 991 0.0
AFG142 (AFG142Q) /CSM/AF/AFG1-B/AFG142Q.Seq.d/ 991 0.0
SFK701 (SFK701Q) /CSM/SF/SFK7-A/SFK701Q.Seq.d/ 985 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 991 0.0 5
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 44 7e-14 18
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 2e-13 24
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 48 3e-10 13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 38 4e-10 17
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 34 2e-09 23
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 46 7e-09 21
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 36 1e-08 13
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 3e-08 19
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 40 3e-08 16
dna update 2004. 9.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 281 1e-74
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara... 49 2e-04
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes... 45 0.002
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028... 45 0.003
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes... 44 0.004
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co... 44 0.004
BT036468_1(BT036468|pid:none) Zea mays full-length cDNA clone ZM... 44 0.006
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat... 44 0.006
CP001279_131(CP001279|pid:none) Nautilia profundicola AmH, compl... 44 0.007
U93872_83(U93872|pid:none) Kaposi's sarcoma-associated herpesvir... 44 0.007
protein update 2009. 3.30
PSORT

psg: 0.98 gvh: 0.73 alm: 0.42 top: 0.20 tms: 0.00 mit: 0.40 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
20.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: extracellular, including cell wall
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system

>> prediction for CHC596 is nuc

5' end seq. ID CHC596F
5' end seq.
>CHC596F.Seq
AAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAAGATT
TCTTTTTCTTTTTTTGAAATNGGTNTAATTAAAAATGTNTAGTAAAAAATATNCATCCTT
TGTAATAGTATTGATTTTATCATGTNTCATTTCAACATGTNCATCTAATCAAATTTNTGA
AGATGNGGGTAAAGCAATTAATCAAAAATTAAATGAAAATNTTGAAAAAGTTGAANATGN
NNNNNNNNN
Length of 5' end seq. 249
3' end seq. ID CHC596Z
3' end seq.
>CHC596Z.Seq
NNNNNNNNNNCTCATACATTCGCTGGTACAGATTCAGTCGGTGTAACTGGTTTCCATATA
ATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATCAACAATACATT
GATAAATCNTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATTACAA
AGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATCTGAA
GATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAA
CGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTA
CAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCC
AATCANCAAGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATATGAA
CTTTTATTAGATCAACTCTATGATGAACAACAACAATCTCCTGACCTTTATTAAAAAATC
AGTTAAAAAAATATTCA
Length of 3' end seq. 557
Connected seq. ID CHC596P
Connected seq.
>CHC596P.Seq
AAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAAGATT
TCTTTTTCTTTTTTTGAAATNGGTNTAATTAAAAATGTNTAGTAAAAAATATNCATCCTT
TGTAATAGTATTGATTTTATCATGTNTCATTTCAACATGTNCATCTAATCAAATTTNTGA
AGATGNGGGTAAAGCAATTAATCAAAAATTAAATGAAAATNTTGAAAAAGTTGAANATG-
---------CTCATACATTCGCTGGTACAGATTCAGTCGGTGTAACTGGTTTCCATATAA
TTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATCAACAATACATTG
ATAAATCNTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATTACAAA
GTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAG
ATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAAC
GTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTAC
AAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCA
ATCANCAAGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATATGAAC
TTTTATTAGATCAACTCTATGATGAACAACAACAATCTCCTGACCTTTATTAAAAAATCA
GTTAAAAAAATATTCA
Length of connected seq. 786
Full length Seq ID -
Full length Seq. -
Length of full length seq. -