CHC546 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHC546
Library	CH (Link to library)
Clone ID	CHC546 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16471-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHC5-B/CHC546Q.Seq.d/
Representative seq. ID	CHC546P (Link to Original site)
Representative DNA sequence	>CHC546 (CHC546Q) /CSM/CH/CHC5-B/CHC546Q.Seq.d/ CTGGTGGTTCCTCATCTGCTGGTACAGTCGGTAACGTAATCTCTGATTCTTATACATCAA TTGGTAAAATTGCATCTGGTAATGGTAATTCCCTTAGTGAGACCATTGGTACCACTGGTG ATACATTGGCTCATACATTCGCTGGTACAGATTCAGTCGGTGTAACTGGTTTCCATATAA TTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATCAACAATACATTG ATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATTACAAA GTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAG ATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAAC GTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTAC AAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCA ATCAACAAGAATTAATCAATTATGAATTGAATTTACAXXXXXXXXXXTGAAGAAATTGAA AGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATG GGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACAT TTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTT GCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTA GAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTT AATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTT GAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAA AAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCT CAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAAT TTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAA CATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTA TTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTTNCTTTTTAAAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	GGSSSAGTVGNVISDSYTSIGKIASGNGNSLSETIGTTGDTLAHTFAGTDSVGVTGFHII TKTFNLIAGGKFNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSED LKNLDDEVIRNTLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRAN QQELINYELNL--- ---EEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEY EAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQ QVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNK QENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhs xlfkk
Translated Amino Acid sequence (All Frames)	Frame A: lvvphllvqsvtslilihqlvklhlvmviplvrplvplvihwlihslvqiqsvlvsi* lqrllillvvnltlinntlinptvqfhhkimkklkrdykvlinnyknnhlqsinqnlk ikimmkfvillrkckfnvkikilvnkikkiknnliykienlvytkinkilnkrkep inknsimniy--- ---rnkttkwwftccklsdcnsngkcknyqtrchtsstfttykwryrv scptsclfrktrccitkngpirtltrerrtifkkfttteksttttrtt tsssnkcttnrttsyqrisktrstketknstrerccllecksstigcigk** tresrefssrettispnksikkystttnprttriksrkkstiirtrtkskiisf fxfk Frame B: wwflicwysrrnlflyinwnciwwfp*dhwyhwyigsyirwyrfsrcnwfpyn ykdffdcwwilstihilrfnsitrrnkeitkcsstitrtitcnlsineir skkfr*snsysgnanstksrywstksrrrtinftkrtwfiqkstrstreksq strinqlieft--- ---EEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEY EAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQ QVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNK QENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQKfnhs xlfkk Frame C: GGSSSAGTVGNVISDSYTSIGKIASGNGNSLSETIGTTGDTLAHTFAGTDSVGVTGFHII TKTFNLIAGGKFNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSED LKNLDDEVIRNTLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRAN QQELINYELNL--- ---kklkdnkmvmvhlltlirllkwemlkimklpmnkmplnklniynvlkmvkismsm klpnmklpfmkmnkmllnykmkwtnnsylkrmkknnfqikiynnlmrmkinnnnkdnn kfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlstvmlkklnlnwmlnwlkiin krikmrifkrnnnlltklkinkifnmnnksknnkinikkkinny*nknkiknnliil xflk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHC546 (CHC546Q) /CSM/CH/CHC5-B/CHC546Q.Seq.d/ 1752 0.0 SFK701 (SFK701Q) /CSM/SF/SFK7-A/SFK701Q.Seq.d/ 1144 0.0 CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/ 1102 0.0 SFB370 (SFB370Q) /CSM/SF/SFB3-C/SFB370Q.Seq.d/ 1098 0.0 AFN735 (AFN735Q) /CSM/AF/AFN7-B/AFN735Q.Seq.d/ 1063 0.0 AFC260 (AFC260Q) /CSM/AF/AFC2-C/AFC260Q.Seq.d/ 1053 0.0 SFJ324 (SFJ324Q) /CSM/SF/SFJ3-A/SFJ324Q.Seq.d/ 1051 0.0 SFE858 (SFE858Q) /CSM/SF/SFE8-C/SFE858Q.Seq.d/ 1051 0.0 SFI544 (SFI544Q) /CSM/SF/SFI5-B/SFI544Q.Seq.d/ 1047 0.0 CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/ 1045 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N U25143\|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 1144 0.0 4 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 5e-31 18 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 3e-14 26 AE017263\|AE017263.1 Mesoplasma florum L1 complete genome. 34 6e-11 33 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 36 3e-09 25 BX842642\|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4. 38 4e-09 21 AC116979\|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 7e-09 22 AP004172\|AP004172.1 Mycoplasma penetrans HF-2 DNA, complete genome, section 3/5. 34 8e-09 19 AB063521\|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2. 34 8e-09 23 BX842643\|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 38 3e-08 24
dna update	2004. 9.17
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 377 e-103 AF305694_1(AF305694\|pid:none) Kaposi's sarcoma-associated herpes... 47 2e-04 CR940347_653(CR940347\|pid:none) Theileria annulata strain Ankara... 50 2e-04 AF148805_82(AF148805\|pid:none) Human herpesvirus 8 type P isolat... 46 3e-04 U52064_1(U52064\|pid:none) Kaposi's sarcoma-associated herpes-lik... 45 4e-04 U93872_83(U93872\|pid:none) Kaposi's sarcoma-associated herpesvir... 45 4e-04 CP001279_131(CP001279\|pid:none) Nautilia profundicola AmH, compl... 49 5e-04 AF192756_1(AF192756\|pid:none) Kaposi's sarcoma-associated herpes... 45 5e-04 (Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028... 47 0.001 BT036468_1(BT036468\|pid:none) Zea mays full-length cDNA clone ZM... 46 0.002
protein update	2009. 3.30
PSORT	psg: 0.85 gvh: 0.42 alm: 0.42 top: 0.47 tms: 0.00 mit: 0.13 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 1.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.50 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: nuclear 40.0 %: cytoplasmic 4.0 %: vesicles of secretory system 4.0 %: extracellular, including cell wall 4.0 %: endoplasmic reticulum >> prediction for CHC546 is nuc
5' end seq. ID	CHC546F
5' end seq.	>CHC546F.Seq CTGGTGGTTCCTCATCTGCTGGTACAGTCGGTAACGTAATCTCTGATTCTTATACATCAA TTGGTAAAATTGCATCTGGTAATGGTAATTCCCTTAGTGAGACCATTGGTACCACTGGTG ATACATTGGCTCATACATTCGCTGGTACAGATTCAGTCGGTGTAACTGGTTTCCATATAA TTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATCAACAATACATTG ATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATTACAAA GTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAG ATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAAC GTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTAC AAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCA ATCAACAAGAATTAATCAATTATGAATTGAATTTACANNNNNNNNNN
Length of 5' end seq.	587
3' end seq. ID	CHC546Z
3' end seq.	>CHC546Z.Seq NNNNNNNNNNTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACT CTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAG ATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGT ATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAAT TACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTT CAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAAC AACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAG AATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCT ACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATA AACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTA AAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAA ATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATT CTTTNCTTTTTAAAAAA
Length of 3' end seq.	737
Connected seq. ID	CHC546P
Connected seq.	>CHC546P.Seq CTGGTGGTTCCTCATCTGCTGGTACAGTCGGTAACGTAATCTCTGATTCTTATACATCAA TTGGTAAAATTGCATCTGGTAATGGTAATTCCCTTAGTGAGACCATTGGTACCACTGGTG ATACATTGGCTCATACATTCGCTGGTACAGATTCAGTCGGTGTAACTGGTTTCCATATAA TTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATCAACAATACATTG ATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATTACAAA GTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATCTGAAG ATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAATTCAAC GTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGATTTAC AAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAGAGCCA ATCAACAAGAATTAATCAATTATGAATTGAATTTACA----------TGAAGAAATTGAA AGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATG GGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACAT TTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTT GCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTA GAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTT AATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTT GAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAA AAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCT CAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAAT TTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAA CATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTA TTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTTNCTTTTTAAAAAA
Length of connected seq.	1304
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas